Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003948

Physical Location & Seq

Genomic Coordinates Reverse (-)

21987379 .. 21988170

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28541.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATGAGGGTTGAGGAAGGTAAAATTGCCTACTTGGCCCCCCGGGATCAGAAGAAATTGGATGAGGTTGAAGCTAAACTTAATGACCTTACCCCGATTCCCATGTTTTCTTCTCAATCTGATTCCGGCCTAGAACAAGGTACTGTTCTTCATCAGGGAGATGACCTTCCCATGATTTCTTCTCAATCCGATTCTGTCGTACAACAAGTTGCTGTTCTAGAGGGAGATGATGTTCCCATCACTATGGGTGTTGGTGTCTTCAGCTCTCGAATTGTTCTCACCGGCGGCATGGAAGTGCTCCCTACAAGAACCTATGTTTTGGAGACTGATCCAAGTGTGGAACCCAACCCCAGGTTCATCCGCAGCAAAGGCAATAAACCCTCCTATTATGTGATTCCAGGATTGCCAGGAGGACAGAAATTTCATCCCTGGCTTCGGGAGATCGATGGATTGTCCGGCTTCAATGTATTTGACCCTGAAACCAAAGCATGGGTTTCTCTCCCAAGTCTTCCGGTTGGAGACCTTCCCTGGGATGCGATTCGTCCATCCAATGTTGCAGTTGTGGGCACCAAGATCTTTGTCACACTTCGCACAAGCTATGAAACAGAAGGCCGTCTACTCTTCTTTGACGTGGCTGACCCCAAGGCAACATGGTCTGATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

24.35

Weight (kDa)

4.76

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36820 FvH4_5g06100 FvH4_5g34640 FvH4_5g34640 FvH4_5g34640 FvH4_6g28541 FvH4_6g28610 FvH4_6g50450
rosa_chinensis	RchiOBHm_Chr1g0379901 RchiOBHm_Chr1g0379941
rosa_laevigata	RLG00000026347
rosa_multiflora	Rmu_co8345317.1_g000001 Rmu_sc0004184.1_g000019 Rmu_sc0004184.1_g000023 Rmu_sc0035510.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279840 Rroxscaffold_4G00279850
rosa_rugosa	Rorug01G0410600 Rorug01G0415700 Rorug01G0415800
rosa_samantha	Rh1AG432900 Rh1AG433100 Rh1AG433300 Rh1AG440000 Rh1AG440300 Rh1BG391100 Rh1BG395900 Rh1BG396100 Rh1CG403800 Rh1CG409200 Rh1DG422200 Rh1DG426900 Rh7DG344800
rosa_wichuraiana	Rw1G038280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	489
AccI	GTMKAC	1 cut(s)	616
AciI	CCGC	2 cut(s)	285, 361
AclWI	GGATC	2 cut(s)	54, 323
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	244
AfaI	GTAC	2 cut(s)	142, 201
AfiI	CCNNNNNNNGG	4 cut(s)	351, 435, 489, 529
AgsI	TTSAA	2 cut(s)	71, 463
AjiI	CACGTC	1 cut(s)	631
AjnI	CCWGG	5 cut(s)	350, 397, 406, 428, 527
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AloI	GAACNNNNNNTCC	2 cut(s)	216, 248
AluBI	AGCT	3 cut(s)	74, 264, 597
AluI	AGCT	3 cut(s)	74, 264, 597
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	317, 513
AlwI	GGATC	2 cut(s)	54, 323
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	3 cut(s)	36, 127, 610
ApeKI	GCWGC	1 cut(s)	363
ApoI	RAATTY	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	2 cut(s)	43, 44
AsuHPI	GGTGA	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	42
BaeGI	GKGCMC	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	566
BarI	GAAGNNNNNNTAC	2 cut(s)	600, 632
BbsI	GAAGAC	2 cut(s)	250, 500
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	375
BccI	CCATC	3 cut(s)	245, 440, 553
BceAI	ACGGC	1 cut(s)	597
BciT130I	CCWGG	5 cut(s)	352, 399, 408, 430, 529
BcnI	CCSGG	2 cut(s)	43, 44
BcoDI	GTCTC	2 cut(s)	317, 513
BfaI	CTAG	2 cut(s)	131, 218
BglI	GCCNNNNNGGC	1 cut(s)	35
BglII	AGATCT	1 cut(s)	573
BisI	GCNGC	2 cut(s)	286, 364
BlsI	GCNGC	2 cut(s)	287, 365
Bme1390I	CCNGG	7 cut(s)	43, 44, 352, 399, 408, 430, 529
BmeT110I	CYCGRG	1 cut(s)	42
BmgBI	CACGTC	1 cut(s)	631
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	3 cut(s)	39, 342, 568
BmrFI	CCNGG	7 cut(s)	43, 44, 352, 399, 408, 430, 529
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	2 cut(s)	250, 500
BpuMI	CCSGG	2 cut(s)	43, 44
Bsa29I	ATCGAT	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	513
BsaJI	CCNNGG	7 cut(s)	41, 42, 350, 428, 527, 528, 642
BsaWI	WCCGGW	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	4 cut(s)	351, 435, 489, 529
Bse118I	RCCGGY	1 cut(s)	281
BseBI	CCWGG	5 cut(s)	352, 399, 408, 430, 529
BseCI	ATCGAT	1 cut(s)	444
BseDI	CCNNGG	7 cut(s)	41, 42, 350, 428, 527, 528, 642
BseGI	GGATG	5 cut(s)	67, 357, 424, 538, 545
BseLI	CCNNNNNNNGG	4 cut(s)	351, 435, 489, 529
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	375
BshFI	GGCC	3 cut(s)	38, 129, 612
BshNI	GGYRCC	1 cut(s)	566
BshVI	ATCGAT	1 cut(s)	444
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	5 cut(s)	43, 126, 282, 456, 512
BslI	CCNNNNNNNGG	4 cut(s)	351, 435, 489, 529
BsmAI	GTCTC	2 cut(s)	317, 513
BsnI	GGCC	3 cut(s)	38, 129, 612
Bso31I	GGTCTC	1 cut(s)	513
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	300, 569
Bsp143I	GATC	5 cut(s)	46, 328, 441, 573, 658
BspACI	CCGC	2 cut(s)	285, 361
BspANI	GGCC	3 cut(s)	38, 129, 612
BspDI	ATCGAT	1 cut(s)	444
BspLI	GGNNCC	3 cut(s)	39, 342, 568
BspPI	GGATC	2 cut(s)	54, 323
BspT107I	GGYRCC	1 cut(s)	566
BspTNI	GGTCTC	1 cut(s)	513
BsrFI	RCCGGY	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	7 cut(s)	41, 42, 350, 428, 527, 528, 642
BssMI	GATC	5 cut(s)	46, 328, 441, 573, 658
BssT1I	CCWWGG	1 cut(s)	642
Bst2UI	CCWGG	5 cut(s)	352, 399, 408, 430, 529
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	626
BstF5I	GGATG	5 cut(s)	67, 357, 424, 538, 545
BstKTI	GATC	5 cut(s)	49, 331, 444, 576, 661
BstMAI	GTCTC	2 cut(s)	317, 513
BstMBI	GATC	5 cut(s)	46, 328, 441, 573, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 369
BstNI	CCWGG	5 cut(s)	352, 399, 408, 430, 529
BstSCI	CCNGG	7 cut(s)	41, 42, 350, 397, 406, 428, 527
BstSLI	GKGCMC	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	375
BstV2I	GAAGAC	2 cut(s)	250, 500
BstX2I	RGATCY	1 cut(s)	573
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	573
Bsu15I	ATCGAT	1 cut(s)	444
BsuRI	GGCC	3 cut(s)	38, 129, 612
BsuTUI	ATCGAT	1 cut(s)	444
BtrI	CACGTC	1 cut(s)	631
BtsCI	GGATG	5 cut(s)	67, 357, 424, 538, 545
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	37
Cfr9I	CCCGGG	1 cut(s)	42
ClaI	ATCGAT	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	141, 200
CviAII	CATG	5 cut(s)	103, 172, 289, 489, 651
CviJI	RGCY	9 cut(s)	38, 74, 129, 264, 433, 459, 597, 612, 635
CviKI_1	RGCY	9 cut(s)	38, 74, 129, 264, 433, 459, 597, 612, 635
CviQI	GTAC	2 cut(s)	141, 200
DpnI	GATC	5 cut(s)	48, 330, 443, 575, 660
DpnII	GATC	5 cut(s)	46, 328, 441, 573, 658
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	642
Eco31I	GGTCTC	1 cut(s)	513
Eco57I	CTGAAG	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	42
EcoRII	CCWGG	5 cut(s)	350, 397, 406, 428, 527
EcoT14I	CCWWGG	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	642
FaeI	CATG	5 cut(s)	106, 175, 292, 492, 654
FaiI	YATR	9 cut(s)	104, 173, 245, 290, 315, 390, 490, 600, 652
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	5 cut(s)	102, 171, 288, 488, 650
FblI	GTMKAC	1 cut(s)	616
Fnu4HI	GCNGC	2 cut(s)	286, 364
FokI	GGATG	5 cut(s)	74, 344, 411, 532, 545
Fsp4HI	GCNGC	2 cut(s)	286, 364
FspBI	CTAG	2 cut(s)	131, 218
GluI	GCNGC	2 cut(s)	286, 364
HaeIII	GGCC	3 cut(s)	38, 129, 612
HapII	CCGG	5 cut(s)	43, 126, 282, 456, 512
Hin1II	CATG	5 cut(s)	106, 175, 292, 492, 654
HinfI	GANTC	5 cut(s)	97, 122, 191, 394, 538
HpaII	CCGG	5 cut(s)	43, 126, 282, 456, 512
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	617
Hpy188I	TCNGA	4 cut(s)	51, 121, 190, 658
Hpy188III	TCNNGA	3 cut(s)	218, 267, 437
Hpy8I	GTNNAC	1 cut(s)	617
HpyAV	CCTTC	4 cut(s)	11, 176, 533, 602
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	1 cut(s)	557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 369
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	5 cut(s)	106, 175, 292, 492, 654
Kzo9I	GATC	5 cut(s)	46, 328, 441, 573, 658
LmnI	GCTCC	1 cut(s)	303
Lsp1109I	GCAGC	1 cut(s)	375
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	2 cut(s)	131, 218
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	5 cut(s)	48, 330, 443, 575, 660
MboI	GATC	5 cut(s)	46, 328, 441, 573, 658
MboII	GAAGA	7 cut(s)	64, 102, 140, 171, 250, 500, 613
MflI	RGATCY	1 cut(s)	573
MhlI	GDGCHC	2 cut(s)	300, 569
MluCI	AATT	4 cut(s)	24, 56, 270, 419
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	5 cut(s)	7, 58, 214, 391, 404
MseI	TTAA	2 cut(s)	81, 664
MslI	CAYNNNNRTG	2 cut(s)	242, 293
MspI	CCGG	5 cut(s)	43, 126, 282, 456, 512
MspR9I	CCNGG	7 cut(s)	43, 44, 352, 399, 408, 430, 529
MvaI	CCWGG	5 cut(s)	352, 399, 408, 430, 529
MwoI	GCNNNNNNNGC	2 cut(s)	35, 369
NciI	CCSGG	2 cut(s)	43, 44
NdeII	GATC	5 cut(s)	46, 328, 441, 573, 658
NlaIII	CATG	5 cut(s)	106, 175, 292, 492, 654
NlaIV	GGNNCC	3 cut(s)	39, 342, 568
NmuCI	GTSAC	1 cut(s)	580
PasI	CCCWGGG	1 cut(s)	528
PfeI	GAWTC	5 cut(s)	97, 122, 191, 394, 538
PflMI	CCANNNNNTGG	1 cut(s)	489
PfoI	TCCNGGA	1 cut(s)	397
PkrI	GCNGC	2 cut(s)	287, 365
Psp6I	CCWGG	5 cut(s)	350, 397, 406, 428, 527
PspGI	CCWGG	5 cut(s)	350, 397, 406, 428, 527
PspN4I	GGNNCC	3 cut(s)	39, 342, 568
PspPI	GGNCC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	573
RsaI	GTAC	2 cut(s)	142, 201
RsaNI	GTAC	2 cut(s)	141, 200
RseI	CAYNNNNRTG	2 cut(s)	242, 293
SaqAI	TTAA	2 cut(s)	81, 664
SatI	GCNGC	2 cut(s)	286, 364
Sau3AI	GATC	5 cut(s)	46, 328, 441, 573, 658
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	7 cut(s)	43, 44, 352, 399, 408, 430, 529
SduI	GDGCHC	2 cut(s)	300, 569
SfaNI	GCATC	1 cut(s)	523
SgrAI	CRCCGGYG	1 cut(s)	281
SmaI	CCCGGG	1 cut(s)	44
SmiMI	CAYNNNNRTG	2 cut(s)	242, 293
Sse9I	AATT	4 cut(s)	24, 56, 270, 419
SsiI	CCGC	2 cut(s)	285, 361
SspMI	CTAG	2 cut(s)	131, 218
StyD4I	CCNGG	7 cut(s)	41, 42, 350, 397, 406, 428, 527
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	2 cut(s)	268, 444
TasI	AATT	4 cut(s)	24, 56, 270, 419
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	5 cut(s)	97, 122, 191, 394, 538
Tru1I	TTAA	2 cut(s)	81, 664
Tru9I	TTAA	2 cut(s)	81, 664
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	1 cut(s)	363
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	4 cut(s)	140, 346, 413, 615
TspMI	CCCGGG	1 cut(s)	42
Van91I	CCANNNNNTGG	1 cut(s)	489
XapI	RAATTY	1 cut(s)	419
XbaI	TCTAGA	1 cut(s)	217
XmaI	CCCGGG	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	616
XspI	CTAG	2 cut(s)	131, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.