Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8345317.1

Orthogroup ID

OG0003948

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 898

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8345317.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgggtggaggagcaaggtctcgggcgagggccaagaagagggcgggagagagtaggaaagcctacgaggctcgggaaaggaagaaacccgacgaggctgaaccattgctgtatctatgcactttcgagatctaccgtggaggtttagccggataccgtgtccaggtcatcagattgagcgacttgttcattccttccgatactcccatcactatattttgccccaaatctcaagcccccaactctaactccaccgaggtgctacgacaatttgcttttttagacggcgaacacgttcccggccatatgggttttggtttcttgggctctcgaattgttctggccggcggccggtttctcaatccgtggatgagacacaaacctaaaccaacctatgttttggagactgatcagagtgtggaacccaaccccaggttcatcagcaccagaggtactcctaatcctaaacccccctatatgattccggaattggaaccggaaaaacgtcgtccctggatgcgggagatcgacggtaagctatacgctctctctggcgatcacataggatatgcggcttttgaggtttttgaccccagaaccgaccatgtatgggcttcgctcccatcgcttccaattaggaatcttccaattgggattgacgggctttctttatcctcgtgtgccgctgtgggcaccaagatcttgatcacacttccgttaaagtctagggtggcagtagtcaagatactctgcttcgacgtggctcaccctgagagatcatggactacacttgaagaaccaccctggtggcagtttaatagtgttttccccgacttttacaacgaggttttagttttagacttggaggatgacgactgtgagaagctactgtttact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

299

Amino Acids

33.8

Weight (kDa)

7.65

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36820 FvH4_5g06100 FvH4_5g34640 FvH4_5g34640 FvH4_5g34640 FvH4_6g28541 FvH4_6g28610 FvH4_6g50450
rosa_chinensis	RchiOBHm_Chr1g0379901 RchiOBHm_Chr1g0379941
rosa_laevigata	RLG00000026347
rosa_multiflora	Rmu_co8345317.1_g000001 Rmu_sc0004184.1_g000019 Rmu_sc0004184.1_g000023 Rmu_sc0035510.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279840 Rroxscaffold_4G00279850
rosa_rugosa	Rorug01G0410600 Rorug01G0415700 Rorug01G0415800
rosa_samantha	Rh1AG432900 Rh1AG433100 Rh1AG433300 Rh1AG440000 Rh1AG440300 Rh1BG391100 Rh1BG395900 Rh1BG396100 Rh1CG403800 Rh1CG409200 Rh1DG422200 Rh1DG426900 Rh7DG344800
rosa_wichuraiana	Rw1G038280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	692
AccIII	TCCGGA	1 cut(s)	484
AciI	CCGC	5 cut(s)	44, 348, 520, 572, 684
AcoI	YGGCCR	3 cut(s)	301, 342, 349
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	6 cut(s)	39, 163, 351, 432, 519, 610
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	794
AjiI	CACGTC	1 cut(s)	760
AjnI	CCWGG	4 cut(s)	162, 431, 512, 803
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AleI	CACNNNNGTG	2 cut(s)	257, 805
AluBI	AGCT	2 cut(s)	538, 886
AluI	AGCT	2 cut(s)	538, 886
Alw26I	GTCTC	3 cut(s)	24, 367, 398
Ama87I	CYCGRG	2 cut(s)	21, 72
Aor13HI	TCCGGA	1 cut(s)	484
AoxI	GGCC	4 cut(s)	30, 301, 342, 349
Asp700I	GAANNNNTTC	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	758
AvaI	CYCGRG	2 cut(s)	21, 72
BaeGI	GKGCMC	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	692
BanII	GRGCYC	1 cut(s)	329
BauI	CACGAG	1 cut(s)	676
BccI	CCATC	2 cut(s)	215, 631
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	4 cut(s)	164, 433, 514, 805
BciVI	GTATCC	1 cut(s)	146
BclI	TGATCA	2 cut(s)	409, 705
BcnI	CCSGG	1 cut(s)	300
BcoDI	GTCTC	3 cut(s)	24, 367, 398
BfaI	CTAG	1 cut(s)	726
BfuI	GTATCC	1 cut(s)	146
BglI	GCCNNNNNGGC	1 cut(s)	68
BglII	AGATCT	2 cut(s)	129, 699
BisI	GCNGC	3 cut(s)	349, 573, 684
BlsI	GCNGC	3 cut(s)	350, 574, 685
Bme1390I	CCNGG	5 cut(s)	164, 300, 433, 514, 805
BmeT110I	CYCGRG	2 cut(s)	21, 72
BmgBI	CACGTC	1 cut(s)	760
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	3 cut(s)	423, 495, 694
BmrFI	CCNGG	5 cut(s)	164, 300, 433, 514, 805
BmsI	GCATC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	704
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	6 cut(s)	136, 255, 365, 431, 512, 803
BsaWI	WCCGGW	2 cut(s)	484, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	6 cut(s)	39, 163, 351, 432, 519, 610
Bse118I	RCCGGY	2 cut(s)	344, 351
Bse3DI	GCAATG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	704
BseAI	TCCGGA	1 cut(s)	484
BseBI	CCWGG	4 cut(s)	164, 433, 514, 805
BseDI	CCNNGG	6 cut(s)	136, 255, 365, 431, 512, 803
BseGI	GGATG	3 cut(s)	375, 522, 874
BseJI	GATNNNNATC	1 cut(s)	704
BseLI	CCNNNNNNNGG	6 cut(s)	39, 163, 351, 432, 519, 610
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	762
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	695
BseX3I	CGGCCG	1 cut(s)	349
Bsh1285I	CGRYCG	1 cut(s)	352
BshFI	GGCC	4 cut(s)	32, 303, 344, 351
BshNI	GGYRCC	1 cut(s)	692
BsiEI	CGRYCG	1 cut(s)	352
BsiHKCI	CYCGRG	2 cut(s)	21, 72
BsiSI	CCGG	6 cut(s)	150, 300, 345, 352, 485, 497
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	6 cut(s)	39, 163, 351, 432, 519, 610
BsmAI	GTCTC	3 cut(s)	24, 367, 398
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	4 cut(s)	32, 303, 344, 351
Bso31I	GGTCTC	1 cut(s)	24
BsoBI	CYCGRG	2 cut(s)	21, 72
Bsp1286I	GDGCHC	2 cut(s)	329, 695
Bsp13I	TCCGGA	1 cut(s)	484
Bsp143I	GATC	7 cut(s)	129, 409, 525, 556, 699, 705, 776
BspACI	CCGC	5 cut(s)	44, 348, 520, 572, 684
BspANI	GGCC	4 cut(s)	32, 303, 344, 351
BspCNI	CTCAG	1 cut(s)	763
BspEI	TCCGGA	1 cut(s)	484
BspLI	GGNNCC	3 cut(s)	423, 495, 694
BspT107I	GGYRCC	1 cut(s)	692
BspTNI	GGTCTC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	104
BsrFI	RCCGGY	2 cut(s)	344, 351
BssAI	RCCGGY	2 cut(s)	344, 351
BssECI	CCNNGG	6 cut(s)	136, 255, 365, 431, 512, 803
BssMI	GATC	7 cut(s)	129, 409, 525, 556, 699, 705, 776
BssSI	CACGAG	1 cut(s)	676
Bst2BI	CACGAG	1 cut(s)	676
Bst2UI	CCWGG	4 cut(s)	164, 433, 514, 805
Bst4CI	ACNGT	5 cut(s)	137, 158, 533, 878, 891
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	1 cut(s)	771
BstDSI	CCRYGG	2 cut(s)	136, 365
BstF5I	GGATG	3 cut(s)	375, 522, 874
BstKTI	GATC	7 cut(s)	132, 412, 528, 559, 702, 708, 779
BstMAI	GTCTC	3 cut(s)	24, 367, 398
BstMBI	GATC	7 cut(s)	129, 409, 525, 556, 699, 705, 776
BstMCI	CGRYCG	1 cut(s)	352
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 625
BstNI	CCWGG	4 cut(s)	164, 433, 514, 805
BstSCI	CCNGG	5 cut(s)	162, 298, 431, 512, 803
BstSLI	GKGCMC	1 cut(s)	695
BstX2I	RGATCY	2 cut(s)	129, 699
BstXI	CCANNNNNNTGG	1 cut(s)	807
BstYI	RGATCY	2 cut(s)	129, 699
BstZI	CGGCCG	1 cut(s)	349
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	4 cut(s)	32, 303, 344, 351
BtgI	CCRYGG	2 cut(s)	136, 365
BtgZI	GCGATG	1 cut(s)	609
BtrI	CACGTC	1 cut(s)	760
BtsCI	GGATG	3 cut(s)	375, 522, 874
Cac8I	GCNNGC	1 cut(s)	346
Cfr10I	RCCGGY	2 cut(s)	344, 351
Cfr13I	GGNCC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	2 cut(s)	605, 780
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	7 cut(s)	131, 411, 527, 558, 701, 707, 778
DpnII	GATC	7 cut(s)	129, 409, 525, 556, 699, 705, 776
EaeI	YGGCCR	3 cut(s)	301, 342, 349
EagI	CGGCCG	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EclXI	CGGCCG	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	329
Eco31I	GGTCTC	1 cut(s)	24
Eco52I	CGGCCG	1 cut(s)	349
Eco88I	CYCGRG	2 cut(s)	21, 72
EcoRII	CCWGG	4 cut(s)	162, 431, 512, 803
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	2 cut(s)	608, 783
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	2 cut(s)	604, 779
FauI	CCCGC	2 cut(s)	37, 513
FauNDI	CATATG	1 cut(s)	306
FbaI	TGATCA	2 cut(s)	409, 705
Fnu4HI	GCNGC	3 cut(s)	349, 573, 684
FokI	GGATG	3 cut(s)	382, 529, 881
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	3 cut(s)	349, 573, 684
FspBI	CTAG	1 cut(s)	726
GluI	GCNGC	3 cut(s)	349, 573, 684
HaeIII	GGCC	4 cut(s)	32, 303, 344, 351
HapII	CCGG	6 cut(s)	150, 300, 345, 352, 485, 497
Hin1II	CATG	2 cut(s)	608, 783
HinfI	GANTC	2 cut(s)	481, 640
HpaII	CCGG	6 cut(s)	150, 300, 345, 352, 485, 497
HphI	GGTGA	1 cut(s)	758
Hpy166II	GTNNAC	1 cut(s)	894
Hpy188I	TCNGA	3 cut(s)	173, 199, 414
Hpy188III	TCNNGA	6 cut(s)	74, 127, 330, 485, 703, 742
Hpy8I	GTNNAC	1 cut(s)	894
Hpy99I	CGWCG	4 cut(s)	95, 510, 533, 761
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	5 cut(s)	137, 158, 533, 878, 891
HpyCH4IV	ACGT	3 cut(s)	294, 505, 759
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 625
HpyF3I	CTNAG	1 cut(s)	771
HpySE526I	ACGT	3 cut(s)	294, 505, 759
Hsp92II	CATG	2 cut(s)	608, 783
Kpn2I	TCCGGA	1 cut(s)	484
KroI	GCCGGC	1 cut(s)	344
KroNI	GCCGGC	1 cut(s)	346
Ksp22I	TGATCA	2 cut(s)	409, 705
Kzo9I	GATC	7 cut(s)	129, 409, 525, 556, 699, 705, 776
LmnI	GCTCC	2 cut(s)	11, 624
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	1 cut(s)	726
MaeII	ACGT	3 cut(s)	294, 505, 759
MalI	GATC	7 cut(s)	131, 411, 527, 558, 701, 707, 778
MboI	GATC	7 cut(s)	129, 409, 525, 556, 699, 705, 776
MboII	GAAGA	4 cut(s)	49, 94, 635, 806
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	2 cut(s)	129, 699
MhlI	GDGCHC	2 cut(s)	329, 695
MluCI	AATT	5 cut(s)	269, 333, 488, 633, 648
MroI	TCCGGA	1 cut(s)	484
MroNI	GCCGGC	1 cut(s)	344
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	2 cut(s)	719, 816
MslI	CAYNNNNRTG	2 cut(s)	257, 805
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	6 cut(s)	150, 300, 345, 352, 485, 497
MspR9I	CCNGG	5 cut(s)	164, 300, 433, 514, 805
MunI	CAATTG	1 cut(s)	648
MvaI	CCWGG	4 cut(s)	164, 433, 514, 805
MwoI	GCNNNNNNNGC	2 cut(s)	68, 625
NaeI	GCCGGC	1 cut(s)	346
NciI	CCSGG	1 cut(s)	300
NdeI	CATATG	1 cut(s)	306
NdeII	GATC	7 cut(s)	129, 409, 525, 556, 699, 705, 776
NgoMIV	GCCGGC	1 cut(s)	344
NlaIII	CATG	2 cut(s)	608, 783
NlaIV	GGNNCC	3 cut(s)	423, 495, 694
OliI	CACNNNNGTG	2 cut(s)	257, 805
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PdiI	GCCGGC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	481, 640
PkrI	GCNGC	3 cut(s)	350, 574, 685
Psp6I	CCWGG	4 cut(s)	162, 431, 512, 803
PspGI	CCWGG	4 cut(s)	162, 431, 512, 803
PspN4I	GGNNCC	3 cut(s)	423, 495, 694
PspPI	GGNCC	1 cut(s)	30
PsuI	RGATCY	2 cut(s)	129, 699
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
RseI	CAYNNNNRTG	2 cut(s)	257, 805
SaqAI	TTAA	2 cut(s)	719, 816
SatI	GCNGC	3 cut(s)	349, 573, 684
Sau3AI	GATC	7 cut(s)	129, 409, 525, 556, 699, 705, 776
Sau96I	GGNCC	1 cut(s)	30
ScrFI	CCNGG	5 cut(s)	164, 300, 433, 514, 805
SduI	GDGCHC	2 cut(s)	329, 695
SfaNI	GCATC	1 cut(s)	507
SmiMI	CAYNNNNRTG	2 cut(s)	257, 805
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	5 cut(s)	269, 333, 488, 633, 648
SsiI	CCGC	5 cut(s)	44, 348, 520, 572, 684
SspMI	CTAG	1 cut(s)	726
StyD4I	CCNGG	5 cut(s)	162, 298, 431, 512, 803
TaaI	ACNGT	5 cut(s)	137, 158, 533, 878, 891
TaiI	ACGT	3 cut(s)	297, 508, 762
TaqI	TCGA	4 cut(s)	126, 331, 528, 756
TasI	AATT	5 cut(s)	269, 333, 488, 633, 648
TauI	GCSGC	3 cut(s)	351, 575, 686
TfiI	GAWTC	2 cut(s)	481, 640
Tru1I	TTAA	2 cut(s)	719, 816
Tru9I	TTAA	2 cut(s)	719, 816
TspDTI	ATGAA	2 cut(s)	178, 427
TspGWI	ACGGA	2 cut(s)	354, 705
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.