Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003948

Physical Location & Seq

Genomic Coordinates Reverse (-)

3599904 .. 3600461

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCCAGGAGGGTTTCCAGCGAGGAAGAAGAAGAGGGCGGAAAAAATACGACAGGTGGAAATTAGCAAAGCGTACGAGGAACAGGAACGGAAGAAGGGTCCCGGGTCTGATCCATTTCTGTATATCTGTACTTTTGAGCTATACAATCATGGTACAGCGGGCTTTTCAGCCGGTTACCGTGTCTACACCATCCGAGTCTCCGATTTGAATGGTTCTGACGATAAGCCAAGGCCCGACAAGCTACGCGAAGTTGCTAATCTGCAAGGGGAACACCTTCCACTCCACATGGGTTTCGCTGTCTTTGGCTCTCGCATTGTTCTAGCCGGCGGCTTGTTTCTGCATCCCAAGAAAAAGCATCTGATACCGACCTATGTTTTGGAGACCGATCCAACTGAGGAACCCAACCCAAGCTTCATCATCAGCACCACTAGTAGTAGTAGACCCCGCTACATGATTCCGCAGTTGAAAGGACATAAAACATCTCGGATCTGGCTTCGGGAGATCGACGGTAAGCTGTATGCTCTCTCCGGTGAACGCTCGAGACAAATGAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.04

Weight (kDa)

9.73

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36820 FvH4_5g06100 FvH4_5g34640 FvH4_5g34640 FvH4_5g34640 FvH4_6g28541 FvH4_6g28610 FvH4_6g50450
rosa_chinensis	RchiOBHm_Chr1g0379901 RchiOBHm_Chr1g0379941
rosa_laevigata	RLG00000026347
rosa_multiflora	Rmu_co8345317.1_g000001 Rmu_sc0004184.1_g000019 Rmu_sc0004184.1_g000023 Rmu_sc0035510.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279840 Rroxscaffold_4G00279850
rosa_rugosa	Rorug01G0410600 Rorug01G0415700 Rorug01G0415800
rosa_samantha	Rh1AG432900 Rh1AG433100 Rh1AG433300 Rh1AG440000 Rh1AG440300 Rh1BG391100 Rh1BG395900 Rh1BG396100 Rh1CG403800 Rh1CG409200 Rh1DG422200 Rh1DG426900 Rh7DG344800
rosa_wichuraiana	Rw1G038280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	183, 439
AccII	CGCG	1 cut(s)	246
AciI	CCGC	5 cut(s)	38, 158, 327, 445, 458
AclWI	GGATC	3 cut(s)	104, 380, 494
AcsI	RAATTY	1 cut(s)	550
AfaI	GTAC	3 cut(s)	74, 130, 154
AgsI	TTSAA	2 cut(s)	208, 466
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	4
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	4 cut(s)	139, 241, 411, 514
AluI	AGCT	4 cut(s)	139, 241, 411, 514
Alw26I	GTCTC	3 cut(s)	202, 374, 535
AlwI	GGATC	3 cut(s)	104, 380, 494
Ama87I	CYCGRG	2 cut(s)	101, 538
AoxI	GGCC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	550
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
Asp700I	GAANNNNTTC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	98, 231
AsuC2I	CCSGG	2 cut(s)	102, 103
AsuHPI	GGTGA	1 cut(s)	542
AvaI	CYCGRG	2 cut(s)	101, 538
AvaII	GGWCC	1 cut(s)	98
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	6
BcnI	CCSGG	2 cut(s)	102, 103
BcoDI	GTCTC	3 cut(s)	202, 374, 535
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	2 cut(s)	320, 429
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
Bme1390I	CCNGG	3 cut(s)	6, 102, 103
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	2 cut(s)	101, 538
BmgT120I	GGNCC	2 cut(s)	98, 231
BmiI	GGNNCC	3 cut(s)	99, 100, 399
BmrFI	CCNGG	3 cut(s)	6, 102, 103
BmsI	GCATC	2 cut(s)	349, 364
BpuMI	CCSGG	2 cut(s)	102, 103
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	101, 227
BsaWI	WCCGGW	1 cut(s)	527
Bse118I	RCCGGY	2 cut(s)	170, 323
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	101, 227
BseGI	GGATG	2 cut(s)	189, 340
BseMII	CTCAG	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	232
BsiHKCI	CYCGRG	2 cut(s)	101, 538
BsiSI	CCGG	4 cut(s)	102, 171, 324, 528
BsiWI	CGTACG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	84
BsmAI	GTCTC	3 cut(s)	202, 374, 535
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	232
Bso31I	GGTCTC	1 cut(s)	374
BsoBI	CYCGRG	2 cut(s)	101, 538
Bsp143I	GATC	4 cut(s)	109, 385, 486, 501
BspACI	CCGC	5 cut(s)	38, 158, 327, 445, 458
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	3 cut(s)	99, 100, 399
BspPI	GGATC	3 cut(s)	104, 380, 494
BspTNI	GGTCTC	1 cut(s)	374
BsrFI	RCCGGY	2 cut(s)	170, 323
BssAI	RCCGGY	2 cut(s)	170, 323
BssECI	CCNNGG	2 cut(s)	101, 227
BssMI	GATC	4 cut(s)	109, 385, 486, 501
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	179, 509
Bst6I	CTCTTC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	160, 325
BstDEI	CTNAG	1 cut(s)	393
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	189, 340
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	4 cut(s)	112, 388, 489, 504
BstMAI	GTCTC	3 cut(s)	202, 374, 535
BstMBI	GATC	4 cut(s)	109, 385, 486, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	6
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	3 cut(s)	4, 100, 101
BstUI	CGCG	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	189, 340
Cac8I	GCNNGC	2 cut(s)	160, 325
Cfr10I	RCCGGY	2 cut(s)	170, 323
Cfr13I	GGNCC	2 cut(s)	98, 231
Cfr9I	CCCGGG	1 cut(s)	101
Csp6I	GTAC	3 cut(s)	73, 129, 153
CviAII	CATG	3 cut(s)	149, 286, 451
CviQI	GTAC	3 cut(s)	73, 129, 153
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	4 cut(s)	111, 387, 488, 503
DpnII	GATC	4 cut(s)	109, 385, 486, 501
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	98
Eco88I	CYCGRG	2 cut(s)	101, 538
Eco91I	GGTNACC	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	3 cut(s)	152, 289, 454
FaiI	YATR	8 cut(s)	123, 142, 150, 287, 372, 452, 474, 519
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	3 cut(s)	148, 285, 450
FauI	CCCGC	2 cut(s)	151, 452
FblI	GTMKAC	2 cut(s)	183, 439
Fnu4HI	GCNGC	1 cut(s)	328
FokI	GGATG	2 cut(s)	176, 327
Fsp4HI	GCNGC	1 cut(s)	328
FspBI	CTAG	2 cut(s)	320, 429
GluI	GCNGC	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	4 cut(s)	102, 171, 324, 528
Hin1II	CATG	3 cut(s)	152, 289, 454
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	2 cut(s)	195, 454
HpaII	CCGG	4 cut(s)	102, 171, 324, 528
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	3 cut(s)	184, 440, 533
Hpy188I	TCNGA	6 cut(s)	109, 194, 202, 217, 360, 486
Hpy188III	TCNNGA	2 cut(s)	497, 540
Hpy8I	GTNNAC	3 cut(s)	184, 440, 533
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	2 cut(s)	88, 284
HpyCH4III	ACNGT	2 cut(s)	179, 509
HpyCH4V	TGCA	2 cut(s)	262, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	152, 289, 454
KflI	GGGWCCC	1 cut(s)	98
KroI	GCCGGC	1 cut(s)	323
KroNI	GCCGGC	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	109, 385, 486, 501
LpnPI	CCDG	9 cut(s)	18, 30, 38, 68, 115, 184, 337, 475, 541
LweI	GCATC	2 cut(s)	349, 364
MaeI	CTAG	2 cut(s)	320, 429
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	4 cut(s)	111, 387, 488, 503
MboI	GATC	4 cut(s)	109, 385, 486, 501
MboII	GAAGA	4 cut(s)	37, 40, 43, 103
MflI	RGATCY	1 cut(s)	486
MluCI	AATT	2 cut(s)	60, 550
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	4 cut(s)	15, 27, 70, 388
MroNI	GCCGGC	1 cut(s)	323
MroXI	GAANNNNTTC	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	4 cut(s)	102, 171, 324, 528
MspR9I	CCNGG	3 cut(s)	6, 102, 103
MvaI	CCWGG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	238
NaeI	GCCGGC	1 cut(s)	325
NciI	CCSGG	2 cut(s)	102, 103
NdeII	GATC	4 cut(s)	109, 385, 486, 501
NgoMIV	GCCGGC	1 cut(s)	323
NlaIII	CATG	3 cut(s)	152, 289, 454
NlaIV	GGNNCC	3 cut(s)	99, 100, 399
PaeR7I	CTCGAG	1 cut(s)	538
PdiI	GCCGGC	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	454
Pfl23II	CGTACG	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	329
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PpuMI	RGGWCCY	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	4
PspEI	GGTNACC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	4
PspLI	CGTACG	1 cut(s)	72
PspN4I	GGNNCC	3 cut(s)	99, 100, 399
PspPI	GGNCC	2 cut(s)	98, 231
PspPPI	RGGWCCY	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	486
RsaI	GTAC	3 cut(s)	74, 130, 154
RsaNI	GTAC	3 cut(s)	73, 129, 153
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	4 cut(s)	109, 385, 486, 501
Sau96I	GGNCC	2 cut(s)	98, 231
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	3 cut(s)	6, 102, 103
SetI	ASST	7 cut(s)	57, 141, 243, 276, 371, 413, 516
SfaNI	GCATC	2 cut(s)	349, 364
Sfr274I	CTCGAG	1 cut(s)	538
SinI	GGWCC	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	538
SmaI	CCCGGG	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	538
SmoI	CTYRAG	1 cut(s)	538
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	2 cut(s)	60, 550
SsiI	CCGC	5 cut(s)	38, 158, 327, 445, 458
SspMI	CTAG	2 cut(s)	320, 429
StyD4I	CCNGG	3 cut(s)	4, 100, 101
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	179, 509
TaqI	TCGA	2 cut(s)	504, 539
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	2 cut(s)	60, 550
TatI	WGTACW	1 cut(s)	128
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	403
TspGWI	ACGGA	1 cut(s)	103
TspMI	CCCGGG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	550
XhoI	CTCGAG	1 cut(s)	538
XmaI	CCCGGG	1 cut(s)	101
XmiI	GTMKAC	2 cut(s)	183, 439
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	2 cut(s)	320, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.