FvH4_6g28610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003948
Physical Location & Seq
Reverse (-)
22067169 .. 22068211
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28610.t1

Sequence Viewer

Length: 813 bp
ATGGGTAGAGGAGGTGCAGCGTATCAGAGGAAGGCGATGAAGAGGGCTGAGGAAGGTAGGATTGCCTACTTGGCCCGTCGGGATAAGAAGAAATTGGACGAGGTTGAAGCTAAACTGTACGTTTGTACTTATGAGTTCCATTTTGGTTATGTCAATGAATTCAATCGATACCGTGTTCACGCCATCAAATTGAGCGACTTGTTCTCTTTTAACCTTACCCCGATTCCCATGTTTTTTTCTCAATCCGATTCTGTCATACAACAAGTTGTTGTTCTAGAGGGAGAAGACGTTCCCATCAATATGGGTATTGGTGTCTTTGGCTCTCGAATTGTTCTGGTCGGCGGTAGGAGAGTGCACCCTACAAGAACCTATGTTTTGGAGACTGATCAAAGTGTGGAACCCAACCCTAGGTTCATCAGCAGCAGATGGATTTCTTCATGCAAACCTAATAGACCTCCCTATGTGATTCCAGGATTGAAAGGAAAGAAATTTTGTCCCTGGCTGGGGGAGATCGACGGTAAGCTATATGCTCTCTCTGGTCGTGAATCCGGGGAGGATGGTCCGGCTTTCAATGTATTTGACCCCAAAACCAAAGCATGGACTTCTCTCCCAAGTCTTCCAACTGGAGACGACCTTTCATGGGAAGCGATTCGTCCATCCAATGTTGCAGTTGTGGACACCAAGATCTTTGTCACACTTCGCACAGAGGAGGAGACAGAAGGCCAGCTACTGTGCTTTGACGTGGCTGACCCCAAGGCAACATGGTCTGATCGTGAACCCCGCATTCGGGACGATATGGGTGTTTTCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

30.53

Weight (kDa)

7.63

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 106 - 257 5.6e-07 Protein of unknown function (DUF1668)
Kelch_FKB95 PF25210 157 - 235 1e-05 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 597
AciI CCGC 2 cut(s) 342, 781
AcsI RAATTY 2 cut(s) 158, 488
AfaI GTAC 2 cut(s) 119, 127
AfiI CCNNNNNNNGG 7 cut(s) 408, 503, 504, 597, 640, 786, 787
AgsI TTSAA 4 cut(s) 107, 163, 478, 571
AjiI CACGTC 1 cut(s) 742
AjnI CCWGG 2 cut(s) 469, 497
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 3 cut(s) 110, 523, 727
AluI AGCT 3 cut(s) 110, 523, 727
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 3 cut(s) 374, 621, 707
Alw44I GTGCAC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 730
AoxI GGCC 2 cut(s) 72, 721
ApaLI GTGCAC 1 cut(s) 353
ApeKI GCWGC 2 cut(s) 17, 420
ApoI RAATTY 2 cut(s) 158, 488
Asp700I GAANNNNTTC 2 cut(s) 288, 648
AspA2I CCTAGG 1 cut(s) 407
AspS9I GGNCC 2 cut(s) 73, 560
AsuC2I CCSGG 1 cut(s) 550
AvaII GGWCC 1 cut(s) 560
AvrII CCTAGG 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 357
BarI GAAGNNNNNNTAC 2 cut(s) 711, 743
BbsI GAAGAC 2 cut(s) 291, 608
Bbv12I GWGCWC 1 cut(s) 357
BbvCI CCTCAGC 1 cut(s) 48
BbvI GCAGC 2 cut(s) 29, 432
BccI CCATC 5 cut(s) 191, 302, 420, 551, 664
BciT130I CCWGG 2 cut(s) 471, 499
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 1 cut(s) 550
BcoDI GTCTC 3 cut(s) 374, 621, 707
BfaI CTAG 2 cut(s) 275, 408
BglI GCCNNNNNGGC 1 cut(s) 71
BglII AGATCT 1 cut(s) 684
BisI GCNGC 2 cut(s) 18, 421
BlnI CCTAGG 1 cut(s) 407
BlsI GCNGC 2 cut(s) 19, 422
Bme1390I CCNGG 3 cut(s) 471, 499, 550
Bme18I GGWCC 1 cut(s) 560
BmgBI CACGTC 1 cut(s) 742
BmgT120I GGNCC 2 cut(s) 73, 560
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 3 cut(s) 471, 499, 550
BpiI GAAGAC 2 cut(s) 291, 608
BpmI CTGGAG 1 cut(s) 645
Bpu10I CCTNAGC 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 550
Bsa29I ATCGAT 1 cut(s) 166
BsaJI CCNNGG 4 cut(s) 407, 497, 549, 753
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 7 cut(s) 408, 503, 504, 597, 640, 786, 787
Bse1I ACTGG 1 cut(s) 628
BseBI CCWGG 2 cut(s) 471, 499
BseCI ATCGAT 1 cut(s) 166
BseDI CCNNGG 4 cut(s) 407, 497, 549, 753
BseGI GGATG 2 cut(s) 562, 656
BseLI CCNNNNNNNGG 7 cut(s) 408, 503, 504, 597, 640, 786, 787
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 628
BseRI GAGGAG 3 cut(s) 24, 722, 725
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 2 cut(s) 29, 432
BseYI CCCAGC 1 cut(s) 502
BsgI GTGCAG 1 cut(s) 36
BshFI GGCC 2 cut(s) 74, 723
BshVI ATCGAT 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 2 cut(s) 549, 563
BslFI GGGAC 2 cut(s) 480, 803
BslI CCNNNNNNNGG 7 cut(s) 408, 503, 504, 597, 640, 786, 787
BsmAI GTCTC 3 cut(s) 374, 621, 707
BsmBI CGTCTC 1 cut(s) 621
BsmFI GGGAC 2 cut(s) 480, 803
BsmI GAATGC 1 cut(s) 783
BsnI GGCC 2 cut(s) 74, 723
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 4 cut(s) 385, 510, 684, 769
BspACI CCGC 2 cut(s) 342, 781
BspANI GGCC 2 cut(s) 74, 723
BspCNI CTCAG 1 cut(s) 40
BspDI ATCGAT 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 399
BsrI ACTGG 1 cut(s) 628
BssECI CCNNGG 4 cut(s) 407, 497, 549, 753
BssMI GATC 4 cut(s) 385, 510, 684, 769
BssT1I CCWWGG 2 cut(s) 407, 753
Bst2UI CCWGG 2 cut(s) 471, 499
Bst4CI ACNGT 4 cut(s) 117, 173, 518, 732
Bst6I CTCTTC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 725
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 562, 656
BstKTI GATC 4 cut(s) 388, 513, 687, 772
BstMAI GTCTC 3 cut(s) 374, 621, 707
BstMBI GATC 4 cut(s) 385, 510, 684, 769
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 2 cut(s) 471, 499
BstSCI CCNGG 3 cut(s) 469, 497, 548
BstSLI GKGCMC 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 29, 432
BstV2I GAAGAC 2 cut(s) 291, 608
BstX2I RGATCY 1 cut(s) 684
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 1 cut(s) 684
Bsu15I ATCGAT 1 cut(s) 166
BsuRI GGCC 2 cut(s) 74, 723
BsuTUI ATCGAT 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 50
BtrI CACGTC 1 cut(s) 742
BtsCI GGATG 2 cut(s) 562, 656
Cac8I GCNNGC 1 cut(s) 725
CaiI CAGNNNCTG 1 cut(s) 730
Cfr13I GGNCC 2 cut(s) 73, 560
ClaI ATCGAT 1 cut(s) 166
Csp6I GTAC 2 cut(s) 118, 126
CviAII CATG 5 cut(s) 229, 438, 597, 639, 762
CviQI GTAC 2 cut(s) 118, 126
DdeI CTNAG 1 cut(s) 48
DpnI GATC 4 cut(s) 387, 512, 686, 771
DpnII GATC 4 cut(s) 385, 510, 684, 769
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco130I CCWWGG 2 cut(s) 407, 753
Eco47I GGWCC 1 cut(s) 560
EcoRI GAATTC 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 469, 497
EcoT14I CCWWGG 2 cut(s) 407, 753
ErhI CCWWGG 2 cut(s) 407, 753
Esp3I CGTCTC 1 cut(s) 621
FaeI CATG 5 cut(s) 232, 441, 600, 642, 765
FaqI GGGAC 2 cut(s) 480, 803
FatI CATG 5 cut(s) 228, 437, 596, 638, 761
FauI CCCGC 1 cut(s) 788
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 18, 421
FokI GGATG 2 cut(s) 569, 643
Fsp4HI GCNGC 2 cut(s) 18, 421
FspBI CTAG 2 cut(s) 275, 408
GluI GCNGC 2 cut(s) 18, 421
GsaI CCCAGC 1 cut(s) 506
GsuI CTGGAG 1 cut(s) 645
HaeIII GGCC 2 cut(s) 74, 723
HapII CCGG 2 cut(s) 549, 563
Hin1II CATG 5 cut(s) 232, 441, 600, 642, 765
HinfI GANTC 5 cut(s) 223, 248, 466, 545, 649
HpaII CCGG 2 cut(s) 549, 563
Hpy166II GTNNAC 4 cut(s) 178, 355, 676, 776
Hpy188I TCNGA 3 cut(s) 27, 247, 769
Hpy188III TCNNGA 6 cut(s) 80, 275, 324, 542, 773, 788
Hpy8I GTNNAC 4 cut(s) 178, 355, 676, 776
Hpy99I CGWCG 2 cut(s) 81, 518
HpyAV CCTTC 3 cut(s) 25, 47, 713
HpyCH4III ACNGT 4 cut(s) 117, 173, 518, 732
HpyCH4IV ACGT 3 cut(s) 120, 288, 741
HpyCH4V TGCA 4 cut(s) 17, 355, 441, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 3 cut(s) 120, 288, 741
Hsp92II CATG 5 cut(s) 232, 441, 600, 642, 765
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 4 cut(s) 385, 510, 684, 769
Lsp1109I GCAGC 2 cut(s) 29, 432
MaeI CTAG 2 cut(s) 275, 408
MaeII ACGT 3 cut(s) 120, 288, 741
MaeIII GTNAC 1 cut(s) 691
MalI GATC 4 cut(s) 387, 512, 686, 771
MboI GATC 4 cut(s) 385, 510, 684, 769
MboII GAAGA 5 cut(s) 52, 100, 296, 426, 608
MflI RGATCY 1 cut(s) 684
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 5 cut(s) 92, 158, 188, 327, 488
MmeI TCCRAC 1 cut(s) 644
MroXI GAANNNNTTC 2 cut(s) 288, 648
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 2 cut(s) 549, 563
MspR9I CCNGG 3 cut(s) 471, 499, 550
Mva1269I GAATGC 1 cut(s) 783
MvaI CCWGG 2 cut(s) 471, 499
MwoI GCNNNNNNNGC 1 cut(s) 71
NciI CCSGG 1 cut(s) 550
NdeII GATC 4 cut(s) 385, 510, 684, 769
NlaIII CATG 5 cut(s) 232, 441, 600, 642, 765
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 1 cut(s) 691
PctI GAATGC 1 cut(s) 783
PdmI GAANNNNTTC 2 cut(s) 288, 648
PfeI GAWTC 5 cut(s) 223, 248, 466, 545, 649
PflMI CCANNNNNTGG 1 cut(s) 597
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 2 cut(s) 19, 422
Psp6I CCWGG 2 cut(s) 469, 497
PspFI CCCAGC 1 cut(s) 502
PspGI CCWGG 2 cut(s) 469, 497
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 2 cut(s) 73, 560
PstNI CAGNNNCTG 1 cut(s) 730
PsuI RGATCY 1 cut(s) 684
RsaI GTAC 2 cut(s) 119, 127
RsaNI GTAC 2 cut(s) 118, 126
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 18, 421
Sau3AI GATC 4 cut(s) 385, 510, 684, 769
Sau96I GGNCC 2 cut(s) 73, 560
ScrFI CCNGG 3 cut(s) 471, 499, 550
SduI GDGCHC 1 cut(s) 357
SinI GGWCC 1 cut(s) 560
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse9I AATT 5 cut(s) 92, 158, 188, 327, 488
SsiI CCGC 2 cut(s) 342, 781
SspMI CTAG 2 cut(s) 275, 408
StyD4I CCNGG 3 cut(s) 469, 497, 548
StyI CCWWGG 2 cut(s) 407, 753
TaaI ACNGT 4 cut(s) 117, 173, 518, 732
TaiI ACGT 3 cut(s) 123, 291, 744
TaqI TCGA 3 cut(s) 166, 325, 513
TasI AATT 5 cut(s) 92, 158, 188, 327, 488
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 5 cut(s) 223, 248, 466, 545, 649
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 2 cut(s) 17, 420
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 5 cut(s) 53, 171, 403, 426, 627
Van91I CCANNNNNTGG 1 cut(s) 597
VneI GTGCAC 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 560
XapI RAATTY 2 cut(s) 158, 488
XbaI TCTAGA 1 cut(s) 274
XmaJI CCTAGG 1 cut(s) 407
XmnI GAANNNNTTC 2 cut(s) 288, 648
XspI CTAG 2 cut(s) 275, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.