FvH4_6g50450

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
37541710 .. 37544212
2503 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50450.t1

Sequence Viewer

Length: 1296 bp
ATGCCGAGGCCGAGATTGGCCCCCCGGGAGAGGGAGAAATCGGACGAGGGTGAAGCGAAACTGTACGTTTGTACTTACGAGTTCCATTTTGTTTATGTCAAAGAATTCAATCGATACCGTGTCCACGCCATCAAATTGAGCGACCTGTTCTCTTTTGACCTTACCCCGATTCCCATGTTTTCTTCTCAATCCGATTCCGACCTACAACAAGTTGCTGTTCTAGAGGGAGAAGCCGTTCCCATCAATATGGGTATTGGTGTCTTTGGCTCTCGAATTATTCTGGCCGGCGGCTGCTATAAAGTGCGCCCCCCTGCACGAACCTATGTTTTGGAGACTGATCAAAGTGTGGAACCCAACCCCAGGTTCATCAGCTGCATGAGCAGCAGACGCAGACGCAGACGCAATAAACCCCCCTCTGTTTTCGTGACTCGTCATTTGGTAGAATCCGACCCCATCAGATGGATTCCTCTACGCAAAGTCATCAGCAGCAGCAGATGGATTCCAGGATTGCCAGGAGGACAGAAATTTCGTCCCTGGCTGGGGGAGATCGACAGTAAGCTATATGCTCTCTCTGGTCGTGAACGTGGCCAGGAAGGTCCGGCTTTCCAAGTATTTGACCCCAAAACCAGAGCATGGGCTTCTCTCCCAAGTCTTCCAACTGGAGACGACCTTTCCTGGGGAGCCATTCGTCCATCCAACGTTGCAGTTGTGGGCACCAAGATCTTTGTCACACTTCGCACAAAGGAGGACACAGAAGGCCAGCTACTCTGCTTTGACGTGGCTGACCCCAAGGCAACATGGTCTGATCGTGAACCCCGCATTCGGGACGATATGGGTGTTTTCCCAGAAATTTTCAACAAGGTTTTAGTCGTGGACTCGCAGGAGGAGGATGAGAAGCTAATCTTTAGCTTTGATTATGAAAACATACTAGTCTCCCGCATGGTGCTGTCCGCTCAGGGTGAAACTGATTGTATTGAACTAGTAGCTAAGATAAGTCTGTCTGGTGAACTTGAAGGATTTGAAGGAACCGCATACAGCTGTGTCCATCTTGGAGGTCAAAAAGTATGCTTTGCATTCTTCTGGGTGACAACTCTTCTTGTGCTCACTTTCAATTATTCCTATTCAAAATCTACAGCTAGTCCTCCTCTTCCTAGAAGTGCTTCAGAAATTTTAACTTATGAATCAATTTGTGGATCATTCTCTGTCCAAACCCTGGGTCTTCGCCAGTTCGAATACAACACTAGTCAGCTTCAGGATATATGTGTGCTCAACATGGGTGGTTGCTTTGTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

432

Amino Acids

48.62

Weight (kDa)

6.21

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 713
AccB7I CCANNNNNTGG 3 cut(s) 459, 633, 1213
AccBSI CCGCTC 1 cut(s) 953
AciI CCGC 5 cut(s) 288, 817, 937, 951, 1029
AclI AACGTT 1 cut(s) 699
AclWI GGATC 1 cut(s) 1201
AcoI YGGCCR 2 cut(s) 282, 586
AcsI RAATTY 4 cut(s) 104, 524, 849, 1167
AcuI CTGAAG 2 cut(s) 1146, 1235
AfaI GTAC 2 cut(s) 65, 73
AgsI TTSAA 7 cut(s) 109, 856, 977, 1013, 1022, 1111, 1125
AhlI ACTAGT 3 cut(s) 928, 979, 1241
AjiI CACGTC 1 cut(s) 778
AjnI CCWGG 7 cut(s) 359, 502, 511, 533, 588, 674, 1212
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AloI GAACNNNNNNTCC 2 cut(s) 219, 251
AluBI AGCT 9 cut(s) 372, 559, 763, 898, 909, 986, 1038, 1136, 1249
AluI AGCT 9 cut(s) 372, 559, 763, 898, 909, 986, 1038, 1136, 1249
Alw21I GWGCWC 2 cut(s) 1104, 1269
Alw26I GTCTC 3 cut(s) 326, 657, 937
AlwI GGATC 1 cut(s) 1201
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 5 cut(s) 8, 18, 282, 586, 757
ApeKI GCWGC 5 cut(s) 291, 372, 381, 486, 489
ApoI RAATTY 4 cut(s) 104, 524, 849, 1167
ArsI GACNNNNNNTTYG 6 cut(s) 418, 450, 510, 542, 1201, 1233
Asp700I GAANNNNTTC 2 cut(s) 234, 1159
AspLEI GCGC 1 cut(s) 306
AspS9I GGNCC 2 cut(s) 19, 596
AsuC2I CCSGG 2 cut(s) 25, 26
AsuHPI GGTGA 4 cut(s) 62, 971, 1016, 1096
AsuII TTCGAA 1 cut(s) 1230
AvaI CYCGRG 1 cut(s) 24
AvaII GGWCC 1 cut(s) 596
BaeGI GKGCMC 1 cut(s) 716
BalI TGGCCA 1 cut(s) 588
BanI GGYRCC 1 cut(s) 713
BarI GAAGNNNNNNTAC 2 cut(s) 747, 779
BbsI GAAGAC 3 cut(s) 644, 1211, 1282
Bbv12I GWGCWC 2 cut(s) 1104, 1269
BbvI GCAGC 5 cut(s) 278, 359, 393, 498, 501
BccI CCATC 7 cut(s) 137, 248, 453, 461, 489, 700, 1053
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 7 cut(s) 361, 504, 513, 535, 590, 676, 1214
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 2 cut(s) 25, 26
BcoDI GTCTC 3 cut(s) 326, 657, 937
BcuI ACTAGT 3 cut(s) 928, 979, 1241
BfaI CTAG 6 cut(s) 221, 929, 980, 1137, 1152, 1242
BfmI CTRYAG 1 cut(s) 1131
BglII AGATCT 1 cut(s) 720
BisI GCNGC 6 cut(s) 289, 292, 373, 382, 487, 490
BlsI GCNGC 6 cut(s) 290, 293, 374, 383, 488, 491
Bme1390I CCNGG 9 cut(s) 25, 26, 361, 504, 513, 535, 590, 676, 1214
Bme18I GGWCC 1 cut(s) 596
BmeT110I CYCGRG 1 cut(s) 24
BmgBI CACGTC 1 cut(s) 778
BmgT120I GGNCC 2 cut(s) 19, 596
BmiI GGNNCC 5 cut(s) 21, 351, 682, 715, 1027
BmrFI CCNGG 9 cut(s) 25, 26, 361, 504, 513, 535, 590, 676, 1214
BpiI GAAGAC 3 cut(s) 644, 1211, 1282
BpmI CTGGAG 1 cut(s) 681
Bpu10I CCTNAGC 1 cut(s) 954
Bpu14I TTCGAA 1 cut(s) 1230
BpuMI CCSGG 2 cut(s) 25, 26
Bsa29I ATCGAT 1 cut(s) 112
BsaJI CCNNGG 9 cut(s) 5, 23, 24, 359, 533, 675, 789, 1212, 1213
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 2 cut(s) 664, 1225
BseBI CCWGG 7 cut(s) 361, 504, 513, 535, 590, 676, 1214
BseCI ATCGAT 1 cut(s) 112
BseDI CCNNGG 9 cut(s) 5, 23, 24, 359, 533, 675, 789, 1212, 1213
BseGI GGATG 2 cut(s) 692, 895
BseMII CTCAG 1 cut(s) 968
BseNI ACTGG 2 cut(s) 664, 1225
BseRI GAGGAG 2 cut(s) 899, 1134
BseSI GKGCMC 1 cut(s) 716
BseXI GCAGC 5 cut(s) 278, 359, 393, 498, 501
BseYI CCCAGC 1 cut(s) 538
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 5 cut(s) 10, 20, 284, 588, 759
BshNI GGYRCC 1 cut(s) 713
BshVI ATCGAT 1 cut(s) 112
BsiHKAI GWGCWC 2 cut(s) 1104, 1269
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 3 cut(s) 25, 285, 599
BslFI GGGAC 2 cut(s) 516, 839
BsmAI GTCTC 3 cut(s) 326, 657, 937
BsmBI CGTCTC 1 cut(s) 657
BsmFI GGGAC 2 cut(s) 516, 839
BsmI GAATGC 2 cut(s) 819, 1073
BsnI GGCC 5 cut(s) 10, 20, 284, 588, 759
BsoBI CYCGRG 1 cut(s) 24
Bsp119I TTCGAA 1 cut(s) 1230
Bsp1286I GDGCHC 3 cut(s) 716, 1104, 1269
Bsp143I GATC 5 cut(s) 337, 546, 720, 805, 1193
BspACI CCGC 5 cut(s) 288, 817, 937, 951, 1029
BspANI GGCC 5 cut(s) 10, 20, 284, 588, 759
BspCNI CTCAG 1 cut(s) 967
BspDI ATCGAT 1 cut(s) 112
BspLI GGNNCC 5 cut(s) 21, 351, 682, 715, 1027
BspPI GGATC 1 cut(s) 1201
BspT104I TTCGAA 1 cut(s) 1230
BspT107I GGYRCC 1 cut(s) 713
BsrBI CCGCTC 1 cut(s) 953
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 2 cut(s) 664, 1225
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 9 cut(s) 5, 23, 24, 359, 533, 675, 789, 1212, 1213
BssMI GATC 5 cut(s) 337, 546, 720, 805, 1193
BssT1I CCWWGG 1 cut(s) 789
Bst2UI CCWGG 7 cut(s) 361, 504, 513, 535, 590, 676, 1214
Bst4CI ACNGT 3 cut(s) 63, 119, 554
Bst6I CTCTTC 2 cut(s) 1098, 1152
BstBI TTCGAA 1 cut(s) 1230
BstC8I GCNNGC 2 cut(s) 286, 761
BstDEI CTNAG 2 cut(s) 954, 987
BstF5I GGATG 2 cut(s) 692, 895
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 5 cut(s) 340, 549, 723, 808, 1196
BstMAI GTCTC 3 cut(s) 326, 657, 937
BstMBI GATC 5 cut(s) 337, 546, 720, 805, 1193
BstMWI GCNNNNNNNGC 3 cut(s) 378, 381, 387
BstNI CCWGG 7 cut(s) 361, 504, 513, 535, 590, 676, 1214
BstSCI CCNGG 9 cut(s) 23, 24, 359, 502, 511, 533, 588, 674, 1212
BstSFI CTRYAG 1 cut(s) 1131
BstSLI GKGCMC 1 cut(s) 716
BstV1I GCAGC 5 cut(s) 278, 359, 393, 498, 501
BstV2I GAAGAC 3 cut(s) 644, 1211, 1282
BstX2I RGATCY 1 cut(s) 720
BstXI CCANNNNNNTGG 1 cut(s) 247
BstYI RGATCY 1 cut(s) 720
Bsu15I ATCGAT 1 cut(s) 112
BsuRI GGCC 5 cut(s) 10, 20, 284, 588, 759
BsuTUI ATCGAT 1 cut(s) 112
BtrI CACGTC 1 cut(s) 778
BtsCI GGATG 2 cut(s) 692, 895
Cac8I GCNNGC 2 cut(s) 286, 761
CfoI GCGC 1 cut(s) 306
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 19, 596
Cfr9I CCCGGG 1 cut(s) 24
ClaI ATCGAT 1 cut(s) 112
CseI GACGC 3 cut(s) 396, 402, 408
Csp6I GTAC 2 cut(s) 64, 72
CspCI CAANNNNNGTGG 2 cut(s) 1258, 1293
CviAII CATG 6 cut(s) 175, 376, 633, 798, 940, 1273
CviQI GTAC 2 cut(s) 64, 72
DdeI CTNAG 2 cut(s) 954, 987
DpnI GATC 5 cut(s) 339, 548, 722, 807, 1195
DpnII GATC 5 cut(s) 337, 546, 720, 805, 1193
EaeI YGGCCR 2 cut(s) 282, 586
Eam1104I CTCTTC 2 cut(s) 1098, 1152
EarI CTCTTC 2 cut(s) 1098, 1152
Eco130I CCWWGG 1 cut(s) 789
Eco47I GGWCC 1 cut(s) 596
Eco57I CTGAAG 2 cut(s) 1146, 1235
Eco88I CYCGRG 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 104
EcoRII CCWGG 7 cut(s) 359, 502, 511, 533, 588, 674, 1212
EcoT14I CCWWGG 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 789
Esp3I CGTCTC 1 cut(s) 657
FaeI CATG 6 cut(s) 178, 379, 636, 801, 943, 1276
FalI AAGNNNNNCTT 2 cut(s) 887, 919
FaqI GGGAC 2 cut(s) 516, 839
FatI CATG 6 cut(s) 174, 375, 632, 797, 939, 1272
FauI CCCGC 2 cut(s) 824, 944
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 6 cut(s) 289, 292, 373, 382, 487, 490
FokI GGATG 2 cut(s) 679, 902
Fsp4HI GCNGC 6 cut(s) 289, 292, 373, 382, 487, 490
FspBI CTAG 6 cut(s) 221, 929, 980, 1137, 1152, 1242
GlaI GCGC 1 cut(s) 305
GluI GCNGC 6 cut(s) 289, 292, 373, 382, 487, 490
GsaI CCCAGC 1 cut(s) 542
GsuI CTGGAG 1 cut(s) 681
HaeIII GGCC 5 cut(s) 10, 20, 284, 588, 759
HapII CCGG 3 cut(s) 25, 285, 599
HgaI GACGC 3 cut(s) 396, 402, 408
HhaI GCGC 1 cut(s) 306
Hin1II CATG 6 cut(s) 178, 379, 636, 801, 943, 1276
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HinfI GANTC 8 cut(s) 169, 194, 427, 443, 463, 499, 875, 1181
HpaII CCGG 3 cut(s) 25, 285, 599
HphI GGTGA 4 cut(s) 62, 971, 1016, 1096
Hpy166II GTNNAC 5 cut(s) 124, 581, 812, 874, 1007
Hpy188I TCNGA 7 cut(s) 43, 193, 199, 448, 458, 805, 1165
Hpy188III TCNNGA 7 cut(s) 221, 270, 424, 578, 809, 824, 1253
Hpy8I GTNNAC 5 cut(s) 124, 581, 812, 874, 1007
HpyAV CCTTC 4 cut(s) 587, 749, 1007, 1016
HpyCH4III ACNGT 3 cut(s) 63, 119, 554
HpyCH4IV ACGT 4 cut(s) 66, 583, 699, 777
HpyCH4V TGCA 4 cut(s) 314, 375, 704, 1073
HpyF10VI GCNNNNNNNGC 3 cut(s) 378, 381, 387
HpyF3I CTNAG 2 cut(s) 954, 987
HpySE526I ACGT 4 cut(s) 66, 583, 699, 777
Hsp92II CATG 6 cut(s) 178, 379, 636, 801, 943, 1276
HspAI GCGC 1 cut(s) 304
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 5 cut(s) 337, 546, 720, 805, 1193
LmnI GCTCC 1 cut(s) 680
Lsp1109I GCAGC 5 cut(s) 278, 359, 393, 498, 501
MaeI CTAG 6 cut(s) 221, 929, 980, 1137, 1152, 1242
MaeII ACGT 4 cut(s) 66, 583, 699, 777
MaeIII GTNAC 3 cut(s) 424, 727, 1084
MalI GATC 5 cut(s) 339, 548, 722, 807, 1195
MbiI CCGCTC 1 cut(s) 953
MboI GATC 5 cut(s) 337, 546, 720, 805, 1193
MboII GAAGA 7 cut(s) 174, 644, 1069, 1085, 1139, 1211, 1282
MflI RGATCY 1 cut(s) 720
MhlI GDGCHC 3 cut(s) 716, 1104, 1269
MlsI TGGCCA 1 cut(s) 588
MluCI AATT 8 cut(s) 104, 134, 273, 524, 849, 1111, 1167, 1185
MluNI TGGCCA 1 cut(s) 588
MlyI GAGTC 2 cut(s) 421, 869
MmeI TCCRAC 4 cut(s) 222, 471, 680, 720
Mox20I TGGCCA 1 cut(s) 588
MroNI GCCGGC 1 cut(s) 284
MroXI GAANNNNTTC 2 cut(s) 234, 1159
MscI TGGCCA 1 cut(s) 588
MseI TTAA 1 cut(s) 1172
MslI CAYNNNNRTG 1 cut(s) 245
Msp20I TGGCCA 1 cut(s) 588
MspA1I CMGCKG 2 cut(s) 372, 1038
MspI CCGG 3 cut(s) 25, 285, 599
MspR9I CCNGG 9 cut(s) 25, 26, 361, 504, 513, 535, 590, 676, 1214
Mva1269I GAATGC 2 cut(s) 819, 1073
MvaI CCWGG 7 cut(s) 361, 504, 513, 535, 590, 676, 1214
MwoI GCNNNNNNNGC 3 cut(s) 378, 381, 387
NaeI GCCGGC 1 cut(s) 286
NciI CCSGG 2 cut(s) 25, 26
NdeII GATC 5 cut(s) 337, 546, 720, 805, 1193
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 6 cut(s) 178, 379, 636, 801, 943, 1276
NlaIV GGNNCC 5 cut(s) 21, 351, 682, 715, 1027
NmeAIII GCCGAG 2 cut(s) 30, 36
NmuCI GTSAC 3 cut(s) 424, 727, 1084
NspV TTCGAA 1 cut(s) 1230
PasI CCCWGGG 1 cut(s) 1213
PctI GAATGC 2 cut(s) 819, 1073
PdiI GCCGGC 1 cut(s) 286
PdmI GAANNNNTTC 2 cut(s) 234, 1159
PfeI GAWTC 6 cut(s) 169, 194, 443, 463, 499, 1181
PflMI CCANNNNNTGG 3 cut(s) 459, 633, 1213
PfoI TCCNGGA 1 cut(s) 502
PkrI GCNGC 6 cut(s) 290, 293, 374, 383, 488, 491
PleI GAGTC 2 cut(s) 421, 869
PpsI GAGTC 2 cut(s) 421, 869
Psp1406I AACGTT 1 cut(s) 699
Psp6I CCWGG 7 cut(s) 359, 502, 511, 533, 588, 674, 1212
PspFI CCCAGC 1 cut(s) 538
PspGI CCWGG 7 cut(s) 359, 502, 511, 533, 588, 674, 1212
PspN4I GGNNCC 5 cut(s) 21, 351, 682, 715, 1027
PspPI GGNCC 2 cut(s) 19, 596
PsuI RGATCY 1 cut(s) 720
PvuII CAGCTG 2 cut(s) 372, 1038
RsaI GTAC 2 cut(s) 65, 73
RsaNI GTAC 2 cut(s) 64, 72
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 1 cut(s) 1172
SatI GCNGC 6 cut(s) 289, 292, 373, 382, 487, 490
Sau3AI GATC 5 cut(s) 337, 546, 720, 805, 1193
Sau96I GGNCC 2 cut(s) 19, 596
SchI GAGTC 2 cut(s) 421, 869
ScrFI CCNGG 9 cut(s) 25, 26, 361, 504, 513, 535, 590, 676, 1214
SduI GDGCHC 3 cut(s) 716, 1104, 1269
SfcI CTRYAG 1 cut(s) 1131
SfuI TTCGAA 1 cut(s) 1230
SinI GGWCC 1 cut(s) 596
SmaI CCCGGG 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 245
SpeI ACTAGT 3 cut(s) 928, 979, 1241
Sse9I AATT 8 cut(s) 104, 134, 273, 524, 849, 1111, 1167, 1185
SsiI CCGC 5 cut(s) 288, 817, 937, 951, 1029
SspMI CTAG 6 cut(s) 221, 929, 980, 1137, 1152, 1242
StyD4I CCNGG 9 cut(s) 23, 24, 359, 502, 511, 533, 588, 674, 1212
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 3 cut(s) 63, 119, 554
TaiI ACGT 4 cut(s) 69, 586, 702, 780
TaqI TCGA 4 cut(s) 112, 271, 549, 1230
TasI AATT 8 cut(s) 104, 134, 273, 524, 849, 1111, 1167, 1185
TatI WGTACW 1 cut(s) 71
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 6 cut(s) 169, 194, 443, 463, 499, 1181
Tru1I TTAA 1 cut(s) 1172
Tru9I TTAA 1 cut(s) 1172
TseFI GTSAC 3 cut(s) 424, 727, 1084
TseI GCWGC 5 cut(s) 291, 372, 381, 486, 489
Tsp45I GTSAC 3 cut(s) 424, 727, 1084
TspDTI ATGAA 3 cut(s) 355, 933, 1194
TspMI CCCGGG 1 cut(s) 24
Van91I CCANNNNNTGG 3 cut(s) 459, 633, 1213
VpaK11BI GGWCC 1 cut(s) 596
XapI RAATTY 4 cut(s) 104, 524, 849, 1167
XbaI TCTAGA 1 cut(s) 220
XmaI CCCGGG 1 cut(s) 24
XmnI GAANNNNTTC 2 cut(s) 234, 1159
XspI CTAG 6 cut(s) 221, 929, 980, 1137, 1152, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.