Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003948

Physical Location & Seq

Genomic Coordinates Forward (+)

51590384 .. 51593271

Gene Structure 2888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0410600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAAATCCATCACGTTGCTTGCTTGGAAGACAATTACGCATACCTAATTATTGACGAGAGCACCAAAGAAGCCGCGGTTGTGGATCCTGTTGAACCCGAAAAGGTTCTTAAAGCAGCCCAAGAGCACGGCGCCCAAGTCAAACTCGTCCTCACCACTCACCACCATTGGGATCATGCTGGTGGAAATGAGAAGATTAAGCAGTTGGTGCCTGGTATTAAAGTATATGGGGGTTCTGTTGATAATGTGAAGGGGTGCACTGATAAGGTGGACAATGGTGATAAGATTTCGCTCGGAGCTGATACTCAAATACTCTCGCTTCACACACCTTGTCACACAAAAGGTCATATAAGTTATTATGTGACTAGCAAAGAGGGAGAGGAACCAGCTGTTTTCACCGGAGACACACTGTTTATTGCTGGTTGTGGCAAATTTTTCGAAGGAACAGCTGAACAGATGCATCAGTCACTATGCGTAACTTTAGCTTCATTGCCAAAGCCTACACGAGTTTACTGTGGTCATGAGTACACGGTGAAGAACTTGCAATTTGCTCAGACAGTAGAACCAGACAATGCCAAGATAAAGCAGAAGTTATCCTGGGCACAGCAGCAGCGGGAAGCAGGTCTCCCGACAGTTCCCTCAACCATTGAGAGTGAGATGGAAACAAACCCTTTTGTGCGGGCTGATCTGCCAGAGCTTCAGGAGAAGGTCGGTTGCCACAATGCTGTGGACGCCCTACGTGAGATAAGGCAGAGGAAGGACAATTGGAGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

258

Amino Acids

28.57

Weight (kDa)

6.0

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	13 - 174	2.5e-14	Metallo-beta-lactamase superfamily
HAGH_C	PF16123	175 - 256	7.6e-29	Hydroxyacylglutathione hydrolase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36820 FvH4_5g06100 FvH4_5g34640 FvH4_5g34640 FvH4_5g34640 FvH4_6g28541 FvH4_6g28610 FvH4_6g50450
rosa_chinensis	RchiOBHm_Chr1g0379901 RchiOBHm_Chr1g0379941
rosa_laevigata	RLG00000026347
rosa_multiflora	Rmu_co8345317.1_g000001 Rmu_sc0004184.1_g000019 Rmu_sc0004184.1_g000023 Rmu_sc0035510.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279840 Rroxscaffold_4G00279850
rosa_rugosa	Rorug01G0410600 Rorug01G0415700 Rorug01G0415800
rosa_samantha	Rh1AG432900 Rh1AG433100 Rh1AG433300 Rh1AG440000 Rh1AG440300 Rh1BG391100 Rh1BG395900 Rh1BG396100 Rh1CG403800 Rh1CG409200 Rh1DG422200 Rh1DG426900 Rh7DG344800
rosa_wichuraiana	Rw1G038280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	611
AccB1I	GGYRCC	2 cut(s)	131, 208
AccII	CGCG	1 cut(s)	77
AciI	CCGC	4 cut(s)	75, 77, 613, 679
AclWI	GGATC	3 cut(s)	80, 93, 180
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	683
AcyI	GRCGYC	2 cut(s)	132, 732
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	2 cut(s)	211, 596
AluBI	AGCT	5 cut(s)	299, 389, 449, 485, 697
AluI	AGCT	5 cut(s)	299, 389, 449, 485, 697
Alw21I	GWGCWC	3 cut(s)	65, 129, 260
Alw26I	GTCTC	2 cut(s)	396, 629
Alw44I	GTGCAC	1 cut(s)	256
AlwI	GGATC	3 cut(s)	80, 93, 180
ApaLI	GTGCAC	1 cut(s)	256
ApeKI	GCWGC	3 cut(s)	116, 607, 610
ApoI	RAATTY	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	134
AsuHPI	GGTGA	5 cut(s)	145, 152, 290, 388, 544
AsuII	TTCGAA	1 cut(s)	438
BaeGI	GKGCMC	2 cut(s)	260, 604
BamHI	GGATCC	1 cut(s)	85
BanI	GGYRCC	2 cut(s)	131, 208
BauI	CACGAG	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	3 cut(s)	65, 129, 260
BbvI	GCAGC	3 cut(s)	128, 619, 622
BccI	CCATC	2 cut(s)	18, 652
BceAI	ACGGC	1 cut(s)	145
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciT130I	CCWGG	2 cut(s)	213, 598
BcoDI	GTCTC	2 cut(s)	396, 629
BfaI	CTAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	611
BisI	GCNGC	4 cut(s)	75, 117, 608, 611
BlsI	GCNGC	4 cut(s)	76, 118, 609, 612
Bme1390I	CCNGG	2 cut(s)	213, 598
BmiI	GGNNCC	4 cut(s)	87, 133, 210, 384
BmrFI	CCNGG	2 cut(s)	213, 598
BmsI	GCATC	2 cut(s)	447, 469
BpiI	GAAGAC	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	438
BsaAI	YACGTR	1 cut(s)	740
BsaHI	GRCGYC	2 cut(s)	132, 732
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	2 cut(s)	75, 597
BsaWI	WCCGGW	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	488
BseBI	CCWGG	2 cut(s)	213, 598
BseDI	CCNNGG	2 cut(s)	75, 597
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	488
BseMII	CTCAG	1 cut(s)	566
BseSI	GKGCMC	2 cut(s)	260, 604
BseXI	GCAGC	3 cut(s)	128, 619, 622
Bsh1236I	CGCG	1 cut(s)	77
BshNI	GGYRCC	2 cut(s)	131, 208
BsiHKAI	GWGCWC	3 cut(s)	65, 129, 260
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	2 cut(s)	396, 629
Bso31I	GGTCTC	1 cut(s)	629
Bsp119I	TTCGAA	1 cut(s)	438
Bsp1286I	GDGCHC	4 cut(s)	65, 129, 260, 604
Bsp143I	GATC	3 cut(s)	85, 172, 685
BspACI	CCGC	4 cut(s)	75, 77, 613, 679
BspCNI	CTCAG	1 cut(s)	565
BspFNI	CGCG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	4 cut(s)	87, 133, 210, 384
BspMI	ACCTGC	1 cut(s)	611
BspPI	GGATC	3 cut(s)	80, 93, 180
BspT104I	TTCGAA	1 cut(s)	438
BspT107I	GGYRCC	2 cut(s)	131, 208
BspTNI	GGTCTC	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	488
BssECI	CCNNGG	2 cut(s)	75, 597
BssMI	GATC	3 cut(s)	85, 172, 685
BssNI	GRCGYC	2 cut(s)	132, 732
BssSI	CACGAG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	2 cut(s)	213, 598
Bst4CI	ACNGT	5 cut(s)	411, 515, 532, 559, 634
BstACI	GRCGYC	2 cut(s)	132, 732
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	740
BstBI	TTCGAA	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	22, 681
BstDEI	CTNAG	1 cut(s)	552
BstDSI	CCRYGG	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	3 cut(s)	88, 175, 688
BstMAI	GTCTC	2 cut(s)	396, 629
BstMBI	GATC	3 cut(s)	85, 172, 685
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 731
BstNI	CCWGG	2 cut(s)	213, 598
BstSCI	CCNGG	2 cut(s)	211, 596
BstSLI	GKGCMC	2 cut(s)	260, 604
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	128, 619, 622
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BtgI	CCRYGG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	258, 407
BveI	ACCTGC	1 cut(s)	611
Cac8I	GCNNGC	2 cut(s)	22, 681
CciI	TCATGA	1 cut(s)	520
CfoI	GCGC	1 cut(s)	134
Cfr42I	CCGCGG	1 cut(s)	78
CseI	GACGC	1 cut(s)	740
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	2 cut(s)	176, 521
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	1 cut(s)	552
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	3 cut(s)	87, 174, 687
DpnII	GATC	3 cut(s)	85, 172, 685
Eco31I	GGTCTC	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	211, 596
EcoT22I	ATGCAT	1 cut(s)	462
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
FaeI	CATG	2 cut(s)	179, 524
FaiI	YATR	9 cut(s)	43, 177, 226, 228, 348, 350, 360, 472, 522
FatI	CATG	2 cut(s)	175, 520
FauI	CCCGC	2 cut(s)	606, 672
Fnu4HI	GCNGC	4 cut(s)	75, 117, 608, 611
Fsp4HI	GCNGC	4 cut(s)	75, 117, 608, 611
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	4 cut(s)	75, 117, 608, 611
HaeII	RGCGCY	1 cut(s)	135
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	740
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	2 cut(s)	132, 732
Hin1II	CATG	2 cut(s)	179, 524
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	5 cut(s)	145, 152, 290, 388, 544
Hpy166II	GTNNAC	5 cut(s)	258, 271, 511, 528, 730
Hpy188I	TCNGA	2 cut(s)	296, 555
Hpy188III	TCNNGA	3 cut(s)	521, 628, 701
Hpy8I	GTNNAC	5 cut(s)	258, 271, 511, 528, 730
HpyAV	CCTTC	4 cut(s)	244, 434, 700, 751
HpyCH4III	ACNGT	5 cut(s)	411, 515, 532, 559, 634
HpyCH4IV	ACGT	2 cut(s)	15, 739
HpyCH4V	TGCA	3 cut(s)	258, 460, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 731
HpyF3I	CTNAG	1 cut(s)	552
HpySE526I	ACGT	2 cut(s)	15, 739
Hsp92I	GRCGYC	2 cut(s)	132, 732
Hsp92II	CATG	2 cut(s)	179, 524
HspAI	GCGC	1 cut(s)	132
KasI	GGCGCC	1 cut(s)	131
KspI	CCGCGG	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	85, 172, 685
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	3 cut(s)	128, 619, 622
LweI	GCATC	2 cut(s)	447, 469
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	2 cut(s)	15, 739
MaeIII	GTNAC	4 cut(s)	332, 361, 465, 475
MalI	GATC	3 cut(s)	87, 174, 687
MboI	GATC	3 cut(s)	85, 172, 685
MboII	GAAGA	3 cut(s)	41, 205, 547
MfeI	CAATTG	1 cut(s)	763
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	4 cut(s)	65, 129, 260, 604
MluCI	AATT	5 cut(s)	34, 48, 431, 545, 763
Mly113I	GGCGCC	1 cut(s)	132
MnlI	CCTC	6 cut(s)	161, 367, 373, 649, 747, 762
Mph1103I	ATGCAT	1 cut(s)	462
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	3 cut(s)	111, 198, 219
MslI	CAYNNNNRTG	1 cut(s)	180
MspA1I	CMGCKG	4 cut(s)	77, 389, 449, 613
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	2 cut(s)	213, 598
MunI	CAATTG	1 cut(s)	763
MvaI	CCWGG	2 cut(s)	213, 598
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	208, 731
NarI	GGCGCC	1 cut(s)	132
NdeII	GATC	3 cut(s)	85, 172, 685
NlaIII	CATG	2 cut(s)	179, 524
NlaIV	GGNNCC	4 cut(s)	87, 133, 210, 384
NmuCI	GTSAC	3 cut(s)	332, 361, 465
NsiI	ATGCAT	1 cut(s)	462
NspV	TTCGAA	1 cut(s)	438
PagI	TCATGA	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	105
PkrI	GCNGC	4 cut(s)	76, 118, 609, 612
PluTI	GGCGCC	1 cut(s)	135
Ppu21I	YACGTR	1 cut(s)	740
Psp6I	CCWGG	2 cut(s)	211, 596
PspGI	CCWGG	2 cut(s)	211, 596
PspN4I	GGNNCC	4 cut(s)	87, 133, 210, 384
PsuI	RGATCY	1 cut(s)	85
PvuII	CAGCTG	2 cut(s)	389, 449
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
RseI	CAYNNNNRTG	1 cut(s)	180
SacII	CCGCGG	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	111, 198, 219
SatI	GCNGC	4 cut(s)	75, 117, 608, 611
Sau3AI	GATC	3 cut(s)	85, 172, 685
ScrFI	CCNGG	2 cut(s)	213, 598
SduI	GDGCHC	4 cut(s)	65, 129, 260, 604
SfaNI	GCATC	2 cut(s)	447, 469
SfoI	GGCGCC	1 cut(s)	133
Sfr303I	CCGCGG	1 cut(s)	78
SfuI	TTCGAA	1 cut(s)	438
SgrBI	CCGCGG	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	5 cut(s)	34, 48, 431, 545, 763
SsiI	CCGC	4 cut(s)	75, 77, 613, 679
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	2 cut(s)	211, 596
TaaI	ACNGT	5 cut(s)	411, 515, 532, 559, 634
TaiI	ACGT	2 cut(s)	18, 742
TaqI	TCGA	1 cut(s)	438
TasI	AATT	5 cut(s)	34, 48, 431, 545, 763
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	3 cut(s)	111, 198, 219
Tru9I	TTAA	3 cut(s)	111, 198, 219
TscAI	CASTG	2 cut(s)	265, 414
TseFI	GTSAC	3 cut(s)	332, 361, 465
TseI	GCWGC	3 cut(s)	116, 607, 610
Tsp45I	GTSAC	3 cut(s)	332, 361, 465
TspDTI	ATGAA	2 cut(s)	17, 477
TspRI	CASTG	2 cut(s)	265, 414
VneI	GTGCAC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	1 cut(s)	366
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.