Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003948

Physical Location & Seq

Genomic Coordinates Reverse (-)

63980925 .. 63984513

Gene Structure 3589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG426900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGTACCATCAGGCCAATGTGTCAAACTCTACCACCATCCACTCATTTTCAAGGCTACATGATCATATGATCCCCGAATGTTCTAGTAGCCGCCGAGGACAAAATCTAGGGTTAGGTTTTGGAAGGATGGGTGGAGGAGCAAGGTCTCGGGCGAGGGCCAAGAAGAGGGCGGAGGACAGTAGGAAAGCCTACGAGGCTCGGGAAAGGAAGAAACCCGACGAGGCTGAACCATTGCTGTATCTATGCACTTTCGAGATCTACCGTGGAGGTTTAGCCGGATACCGTGTCCAGGTCATCAGATTGAGCGACTTGTTCATTCCTTCCGATACTCCCATCACTATATTTTGCCCCAAATCTCAAGCCCCCAAATCCAACTCCACCGAGGTGCTACGACAATTTGCTTTTTTAGACGGTGAACACGTTCCCGGCCATATGGGTTTTGGTGTCTTGGGCTCTCGAATTGTTTTGGCCGGCGGCTGGTTTCTCAATATGCGGATGGGACACAAACCTAAACCAACATATGTTTTGGAGACTGATCAAAGTGTGGAACCCAACCCCAGGTTCATCAGCACCAGAGGTACTCCTAATCCTAAACCCCCCTATATGATTCCGGAATTGGAACCGGAAAAACCTCGTCCCTGGATGCGGGAGATCGACGGTAAGCTATACGCTCTCTCTGGCGATCACATAGGATATGCGGCTTTTGAGGTATTTGACCCCAAAACCGACCATGTATGGGCTCCTCTCCCCAAGCTTCAAATTAGGAAGCTTCCAATTGAGACTAAAGGGCTTTCTTTATCCTCGTGTGCCGTTGTGGGCACCAAGATCTTGATCACACTTCCGTTAAAGTCTAGGGTGGGAGTAGTCAAGATGCTCTGCTTCGACGTGGCTCACCCTGAGAGATCATGGACTACACTTGAAGAACCACCCTGGTGGCAGTTTCATAGTGTTTTCCCCGACTTTTACAACGAGGTTTTAGTTTTAGACTTGGAGGATGACGACTGTGAGAAGCTACTGTTTACTTATGATTTTGAATATTGCCAAATACGAGTCTCCAGCATGAAGCTGTCCAATGAAGGTGAACCTAAGTGTATTCAACCGCTAGATGAGATAGATTTGCCTGATGCGTTTAAGAACTTGGATGATTTTTTAGCAACTTCGTACAGCTGTGCTCATCTTGGAGGTCGAAGAGTATGCTTTTCATTCGTGCATTTGCTAACTCTTCTTGTGTTCACCTTCGAATTTTCCTATTCGATTTCTGGAATATTCTCTGTCAAAGCCCTGGGTCATCGCCTGTTCGAGTACTACTCGGATGAGGAACTTCGTTCTATCTTTTTGGGTGGTTGCTTTGTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

452

Amino Acids

51.33

Weight (kDa)

6.71

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36820 FvH4_5g06100 FvH4_5g34640 FvH4_5g34640 FvH4_5g34640 FvH4_6g28541 FvH4_6g28610 FvH4_6g50450
rosa_chinensis	RchiOBHm_Chr1g0379901 RchiOBHm_Chr1g0379941
rosa_laevigata	RLG00000026347
rosa_multiflora	Rmu_co8345317.1_g000001 Rmu_sc0004184.1_g000019 Rmu_sc0004184.1_g000023 Rmu_sc0035510.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279840 Rroxscaffold_4G00279850
rosa_rugosa	Rorug01G0410600 Rorug01G0415700 Rorug01G0415800
rosa_samantha	Rh1AG432900 Rh1AG433100 Rh1AG433300 Rh1AG440000 Rh1AG440300 Rh1BG391100 Rh1BG395900 Rh1BG396100 Rh1CG403800 Rh1CG409200 Rh1DG422200 Rh1DG426900 Rh7DG344800
rosa_wichuraiana	Rw1G038280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	818
AccIII	TCCGGA	1 cut(s)	610
AciI	CCGC	7 cut(s)	91, 170, 474, 493, 646, 698, 1100
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	2 cut(s)	427, 468
AcsI	RAATTY	1 cut(s)	1241
AfaI	GTAC	4 cut(s)	5, 580, 1163, 1304
AfiI	CCNNNNNNNGG	6 cut(s)	165, 289, 477, 558, 645, 736
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	5 cut(s)	51, 758, 920, 1034, 1097
AjiI	CACGTC	1 cut(s)	886
AjnI	CCWGG	5 cut(s)	288, 557, 638, 929, 1281
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
AleI	CACNNNNGTG	2 cut(s)	383, 931
AluBI	AGCT	6 cut(s)	664, 754, 769, 1012, 1066, 1167
AluI	AGCT	6 cut(s)	664, 754, 769, 1012, 1066, 1167
Alw21I	GWGCWC	1 cut(s)	1174
Alw26I	GTCTC	4 cut(s)	150, 524, 773, 1057
AlwI	GGATC	1 cut(s)	64
Ama87I	CYCGRG	2 cut(s)	147, 198
Aor13HI	TCCGGA	1 cut(s)	610
AoxI	GGCC	4 cut(s)	12, 156, 427, 468
ApoI	RAATTY	1 cut(s)	1241
Asp700I	GAANNNNTTC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	156
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	4 cut(s)	425, 884, 1091, 1225
AsuII	TTCGAA	1 cut(s)	1239
AvaI	CYCGRG	2 cut(s)	147, 198
BaeGI	GKGCMC	1 cut(s)	821
BanI	GGYRCC	1 cut(s)	818
BanII	GRGCYC	2 cut(s)	455, 742
BauI	CACGAG	1 cut(s)	802
Bbv12I	GWGCWC	1 cut(s)	1174
BccI	CCATC	5 cut(s)	15, 44, 121, 341, 490
BceAI	ACGGC	1 cut(s)	794
BcgI	CGANNNNNNTGC	2 cut(s)	1176, 1210
BciT130I	CCWGG	5 cut(s)	290, 559, 640, 931, 1283
BciVI	GTATCC	1 cut(s)	272
BclI	TGATCA	3 cut(s)	61, 535, 831
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	4 cut(s)	150, 524, 773, 1057
BfaI	CTAG	4 cut(s)	84, 107, 852, 1103
BfuI	GTATCC	1 cut(s)	272
BglI	GCCNNNNNGGC	1 cut(s)	194
BglII	AGATCT	2 cut(s)	255, 825
BisI	GCNGC	3 cut(s)	91, 475, 699
BlsI	GCNGC	3 cut(s)	92, 476, 700
BmcAI	AGTACT	1 cut(s)	1304
Bme1390I	CCNGG	6 cut(s)	290, 426, 559, 640, 931, 1283
BmeT110I	CYCGRG	2 cut(s)	147, 198
BmgBI	CACGTC	1 cut(s)	886
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	4 cut(s)	549, 621, 741, 820
BmrFI	CCNGG	6 cut(s)	290, 426, 559, 640, 931, 1283
BmsI	GCATC	3 cut(s)	633, 861, 1114
BplI	GAGNNNNNCTC	2 cut(s)	1292, 1324
BpmI	CTGGAG	1 cut(s)	1039
Bpu14I	TTCGAA	1 cut(s)	1239
BpuEI	CTTGAG	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	830
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	8 cut(s)	94, 262, 381, 557, 638, 929, 1281, 1282
BsaWI	WCCGGW	2 cut(s)	610, 622
Bsc4I	CCNNNNNNNGG	6 cut(s)	165, 289, 477, 558, 645, 736
Bse118I	RCCGGY	1 cut(s)	470
Bse3DI	GCAATG	1 cut(s)	230
Bse8I	GATNNNNATC	1 cut(s)	830
BseAI	TCCGGA	1 cut(s)	610
BseBI	CCWGG	5 cut(s)	290, 559, 640, 931, 1283
BseDI	CCNNGG	8 cut(s)	94, 262, 381, 557, 638, 929, 1281, 1282
BseGI	GGATG	7 cut(s)	36, 132, 501, 648, 1000, 1147, 1318
BseJI	GATNNNNATC	1 cut(s)	830
BseLI	CCNNNNNNNGG	6 cut(s)	165, 289, 477, 558, 645, 736
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	888
BseRI	GAGGAG	2 cut(s)	150, 732
BseSI	GKGCMC	1 cut(s)	821
BshFI	GGCC	4 cut(s)	14, 158, 429, 470
BshNI	GGYRCC	1 cut(s)	818
BsiHKAI	GWGCWC	1 cut(s)	1174
BsiHKCI	CYCGRG	2 cut(s)	147, 198
BsiSI	CCGG	5 cut(s)	276, 426, 471, 611, 623
BslFI	GGGAC	2 cut(s)	513, 621
BslI	CCNNNNNNNGG	6 cut(s)	165, 289, 477, 558, 645, 736
BsmAI	GTCTC	4 cut(s)	150, 524, 773, 1057
BsmFI	GGGAC	2 cut(s)	513, 621
BsnI	GGCC	4 cut(s)	14, 158, 429, 470
Bso31I	GGTCTC	1 cut(s)	150
BsoBI	CYCGRG	2 cut(s)	147, 198
Bsp119I	TTCGAA	1 cut(s)	1239
Bsp1286I	GDGCHC	4 cut(s)	455, 742, 821, 1174
Bsp13I	TCCGGA	1 cut(s)	610
Bsp143I	GATC	9 cut(s)	61, 69, 255, 535, 651, 682, 825, 831, 902
BspACI	CCGC	7 cut(s)	91, 170, 474, 493, 646, 698, 1100
BspANI	GGCC	4 cut(s)	14, 158, 429, 470
BspCNI	CTCAG	1 cut(s)	889
BspEI	TCCGGA	1 cut(s)	610
BspLI	GGNNCC	4 cut(s)	549, 621, 741, 820
BspPI	GGATC	1 cut(s)	64
BspT104I	TTCGAA	1 cut(s)	1239
BspT107I	GGYRCC	1 cut(s)	818
BspTNI	GGTCTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	470
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	8 cut(s)	94, 262, 381, 557, 638, 929, 1281, 1282
BssMI	GATC	9 cut(s)	61, 69, 255, 535, 651, 682, 825, 831, 902
BssSI	CACGAG	1 cut(s)	802
Bst2BI	CACGAG	1 cut(s)	802
Bst2UI	CCWGG	5 cut(s)	290, 559, 640, 931, 1283
Bst4CI	ACNGT	7 cut(s)	179, 263, 284, 413, 659, 1004, 1017
Bst6I	CTCTTC	3 cut(s)	158, 1183, 1227
BstBI	TTCGAA	1 cut(s)	1239
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	2 cut(s)	897, 1086
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	7 cut(s)	36, 132, 501, 648, 1000, 1147, 1318
BstKTI	GATC	9 cut(s)	64, 72, 258, 538, 654, 685, 828, 834, 905
BstMAI	GTCTC	4 cut(s)	150, 524, 773, 1057
BstMBI	GATC	9 cut(s)	61, 69, 255, 535, 651, 682, 825, 831, 902
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	5 cut(s)	290, 559, 640, 931, 1283
BstSCI	CCNGG	6 cut(s)	288, 424, 557, 638, 929, 1281
BstSLI	GKGCMC	1 cut(s)	821
BstX2I	RGATCY	2 cut(s)	255, 825
BstXI	CCANNNNNNTGG	1 cut(s)	933
BstYI	RGATCY	2 cut(s)	255, 825
BsuI	GTATCC	1 cut(s)	272
BsuRI	GGCC	4 cut(s)	14, 158, 429, 470
BtgI	CCRYGG	1 cut(s)	262
BtgZI	GCGATG	1 cut(s)	1274
BtrI	CACGTC	1 cut(s)	886
BtsCI	GGATG	7 cut(s)	36, 132, 501, 648, 1000, 1147, 1318
Cac8I	GCNNGC	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	156
Csp6I	GTAC	4 cut(s)	4, 579, 1162, 1303
CviAII	CATG	4 cut(s)	59, 731, 906, 1060
CviQI	GTAC	4 cut(s)	4, 579, 1162, 1303
DdeI	CTNAG	2 cut(s)	897, 1086
DpnI	GATC	9 cut(s)	63, 71, 257, 537, 653, 684, 827, 833, 904
DpnII	GATC	9 cut(s)	61, 69, 255, 535, 651, 682, 825, 831, 902
EaeI	YGGCCR	2 cut(s)	427, 468
Eam1104I	CTCTTC	3 cut(s)	158, 1183, 1227
EarI	CTCTTC	3 cut(s)	158, 1183, 1227
EciI	GGCGGA	1 cut(s)	185
Eco24I	GRGCYC	2 cut(s)	455, 742
Eco31I	GGTCTC	1 cut(s)	150
Eco88I	CYCGRG	2 cut(s)	147, 198
EcoRII	CCWGG	5 cut(s)	288, 557, 638, 929, 1281
EcoT38I	GRGCYC	2 cut(s)	455, 742
FaeI	CATG	4 cut(s)	62, 734, 909, 1063
FaqI	GGGAC	2 cut(s)	513, 621
FatI	CATG	4 cut(s)	58, 730, 905, 1059
FauI	CCCGC	1 cut(s)	639
FauNDI	CATATG	3 cut(s)	66, 432, 520
FbaI	TGATCA	3 cut(s)	61, 535, 831
Fnu4HI	GCNGC	3 cut(s)	91, 475, 699
FokI	GGATG	7 cut(s)	23, 139, 508, 655, 1007, 1154, 1325
FriOI	GRGCYC	2 cut(s)	455, 742
Fsp4HI	GCNGC	3 cut(s)	91, 475, 699
FspBI	CTAG	4 cut(s)	84, 107, 852, 1103
GluI	GCNGC	3 cut(s)	91, 475, 699
GsuI	CTGGAG	1 cut(s)	1039
HaeIII	GGCC	4 cut(s)	14, 158, 429, 470
HapII	CCGG	5 cut(s)	276, 426, 471, 611, 623
Hin1II	CATG	4 cut(s)	62, 734, 909, 1063
HindIII	AAGCTT	2 cut(s)	752, 767
HinfI	GANTC	2 cut(s)	607, 1050
HpaII	CCGG	5 cut(s)	276, 426, 471, 611, 623
HphI	GGTGA	4 cut(s)	425, 884, 1091, 1225
Hpy166II	GTNNAC	4 cut(s)	416, 1020, 1082, 1233
Hpy188I	TCNGA	3 cut(s)	299, 325, 1312
Hpy188III	TCNNGA	7 cut(s)	200, 253, 456, 611, 829, 868, 1260
Hpy8I	GTNNAC	4 cut(s)	416, 1020, 1082, 1233
Hpy99I	CGWCG	3 cut(s)	221, 659, 887
HpyAV	CCTTC	4 cut(s)	117, 330, 1070, 1246
HpyCH4III	ACNGT	7 cut(s)	179, 263, 284, 413, 659, 1004, 1017
HpyCH4IV	ACGT	2 cut(s)	420, 885
HpyCH4V	TGCA	2 cut(s)	246, 1210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	2 cut(s)	897, 1086
HpySE526I	ACGT	2 cut(s)	420, 885
Hsp92II	CATG	4 cut(s)	62, 734, 909, 1063
Kpn2I	TCCGGA	1 cut(s)	610
KroI	GCCGGC	1 cut(s)	470
KroNI	GCCGGC	1 cut(s)	472
Ksp22I	TGATCA	3 cut(s)	61, 535, 831
Kzo9I	GATC	9 cut(s)	61, 69, 255, 535, 651, 682, 825, 831, 902
LmnI	GCTCC	2 cut(s)	137, 745
LweI	GCATC	3 cut(s)	633, 861, 1114
MaeI	CTAG	4 cut(s)	84, 107, 852, 1103
MaeII	ACGT	2 cut(s)	420, 885
MalI	GATC	9 cut(s)	63, 71, 257, 537, 653, 684, 827, 833, 904
MboI	GATC	9 cut(s)	61, 69, 255, 535, 651, 682, 825, 831, 902
MboII	GAAGA	5 cut(s)	175, 220, 932, 1200, 1214
MfeI	CAATTG	1 cut(s)	774
MflI	RGATCY	2 cut(s)	255, 825
MhlI	GDGCHC	4 cut(s)	455, 742, 821, 1174
MluCI	AATT	6 cut(s)	395, 459, 614, 759, 774, 1241
MlyI	GAGTC	1 cut(s)	1059
MmeI	TCCRAC	1 cut(s)	396
MroI	TCCGGA	1 cut(s)	610
MroNI	GCCGGC	1 cut(s)	470
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	2 cut(s)	845, 1131
MslI	CAYNNNNRTG	2 cut(s)	383, 931
MspA1I	CMGCKG	1 cut(s)	1167
MspI	CCGG	5 cut(s)	276, 426, 471, 611, 623
MspR9I	CCNGG	6 cut(s)	290, 426, 559, 640, 931, 1283
MunI	CAATTG	1 cut(s)	774
MvaI	CCWGG	5 cut(s)	290, 559, 640, 931, 1283
MwoI	GCNNNNNNNGC	1 cut(s)	194
NaeI	GCCGGC	1 cut(s)	472
NciI	CCSGG	1 cut(s)	426
NdeI	CATATG	3 cut(s)	66, 432, 520
NdeII	GATC	9 cut(s)	61, 69, 255, 535, 651, 682, 825, 831, 902
NgoMIV	GCCGGC	1 cut(s)	470
NlaIII	CATG	4 cut(s)	62, 734, 909, 1063
NlaIV	GGNNCC	4 cut(s)	549, 621, 741, 820
NmeAIII	GCCGAG	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	1239
OliI	CACNNNNGTG	2 cut(s)	383, 931
PasI	CCCWGGG	1 cut(s)	1282
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PdiI	GCCGGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	607
PkrI	GCNGC	3 cut(s)	92, 476, 700
PleI	GAGTC	1 cut(s)	1058
PpsI	GAGTC	1 cut(s)	1058
Psp6I	CCWGG	5 cut(s)	288, 557, 638, 929, 1281
PspGI	CCWGG	5 cut(s)	288, 557, 638, 929, 1281
PspN4I	GGNNCC	4 cut(s)	549, 621, 741, 820
PspPI	GGNCC	1 cut(s)	156
PsuI	RGATCY	2 cut(s)	255, 825
PvuII	CAGCTG	1 cut(s)	1167
RsaI	GTAC	4 cut(s)	5, 580, 1163, 1304
RsaNI	GTAC	4 cut(s)	4, 579, 1162, 1303
RseI	CAYNNNNRTG	2 cut(s)	383, 931
SaqAI	TTAA	2 cut(s)	845, 1131
SatI	GCNGC	3 cut(s)	91, 475, 699
Sau3AI	GATC	9 cut(s)	61, 69, 255, 535, 651, 682, 825, 831, 902
Sau96I	GGNCC	1 cut(s)	156
ScaI	AGTACT	1 cut(s)	1304
SchI	GAGTC	1 cut(s)	1059
ScrFI	CCNGG	6 cut(s)	290, 426, 559, 640, 931, 1283
SduI	GDGCHC	4 cut(s)	455, 742, 821, 1174
SfaNI	GCATC	3 cut(s)	633, 861, 1114
SfuI	TTCGAA	1 cut(s)	1239
SmiMI	CAYNNNNRTG	2 cut(s)	383, 931
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	6 cut(s)	395, 459, 614, 759, 774, 1241
SsiI	CCGC	7 cut(s)	91, 170, 474, 493, 646, 698, 1100
SspI	AATATT	2 cut(s)	1037, 1266
SspMI	CTAG	4 cut(s)	84, 107, 852, 1103
StyD4I	CCNGG	6 cut(s)	288, 424, 557, 638, 929, 1281
TaaI	ACNGT	7 cut(s)	179, 263, 284, 413, 659, 1004, 1017
TaiI	ACGT	2 cut(s)	423, 888
TaqI	TCGA	8 cut(s)	252, 457, 654, 882, 1186, 1239, 1253, 1299
TasI	AATT	6 cut(s)	395, 459, 614, 759, 774, 1241
TatI	WGTACW	1 cut(s)	1302
TauI	GCSGC	3 cut(s)	93, 477, 701
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	2 cut(s)	845, 1131
Tru9I	TTAA	2 cut(s)	845, 1131
TspDTI	ATGAA	6 cut(s)	304, 553, 932, 1076, 1089, 1191
TspGWI	ACGGA	1 cut(s)	831
XapI	RAATTY	1 cut(s)	1241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	4 cut(s)	84, 107, 852, 1103
ZrmI	AGTACT	1 cut(s)	1304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.