Rorug01G0415700

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003948
Physical Location & Seq
Forward (+)
51895310 .. 51897391
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0415700.1

Sequence Viewer

Length: 867 bp
ATGGAGGCACTGATAGCTTCTTACGGAGACACGTCGTCGGACTCAGACTCCGAATCGTCGCCGGCGCCACCACCGGAGCAGAAAACGTCTCAAGAATCAACAGCTGTTCTTCTTCCTCCGCCTCCTCTCTCACTTCTCGACGCCCCCAATTCATTAGGATTTCTGGACTACTTGCCGAGCGCCCAGCCCAGCAGAGTTAGGAACTTCCCTCATATAGATGGAAACTACGCTCTACATGTCTATATCCCAGTTTATATACCGGCGGCGCCGAGGAAGGAGATGGCATTGTTTATGAGGAGACTGTCATCTGTTGTGCCTGGTCTCCATGCTGCGGACGTTGATGTGCCGCTTGACGTTTTGTGCAAAGATGAACAAAAGCTTGAACAGGTTGGTTTAGGGAGGGAGTTTCATATAAGTCTGGGGAGGACTGTGCCGATCCGGGTGCACCAGATTGACTCATTGGTGGCAATGCTGAAGCAGAAGCTTCAGACTCATAGGCGTTATTGGATTGATTTTAGCAAGTGGGAGGTTTTTGTTAACGATGATCATACACGCACCTTTGTATCAGTAGAAGTTATTACTGCTGGATTAGCTGAGATAACAAAGCAGATTCAAGCTGTCAATGAGGTGTATAAGCTTCACAATCTCCCTGAGTTTTACAAGGATCCACGTCCCCATATATCAGTCGCTTGGGCATTGGGTGACACCAGGGAATCCCTAAAGAAAGTGGTTGAAGATGAAAGAAGAAAATCTACTGTTGGGGGGTCACTGCAGAAATGTATTTTTACCAGTAGATTCAGTGGCATAGACTATATTGCAGGGTTCTATCAGAAGGACATATGTATGACACCAAGAGAAAGGTTGTAA

Protein Analysis

288

Amino Acids

32.44

Weight (kDa)

6.31

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HVSL PF09749 39 - 252 2.2e-51 Uncharacterised conserved protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 64, 265
AciI CCGC 4 cut(s) 119, 263, 332, 347
AclWI GGATC 3 cut(s) 430, 659, 672
AcuI CTGAAG 2 cut(s) 470, 494
AcyI GRCGYC 3 cut(s) 65, 141, 266
AfiI CCNNNNNNNGG 1 cut(s) 331
AflIII ACRYGT 2 cut(s) 30, 235
AgsI TTSAA 3 cut(s) 383, 614, 734
AhdI GACNNNNNGTC 1 cut(s) 34
AjiI CACGTC 2 cut(s) 33, 671
AjnI CCWGG 2 cut(s) 316, 707
AluBI AGCT 7 cut(s) 17, 104, 379, 484, 593, 617, 637
AluI AGCT 7 cut(s) 17, 104, 379, 484, 593, 617, 637
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 4 cut(s) 21, 93, 292, 326
Alw44I GTGCAC 1 cut(s) 443
AlwI GGATC 3 cut(s) 430, 659, 672
ApaLI GTGCAC 1 cut(s) 443
ApeKI GCWGC 1 cut(s) 329
AspLEI GCGC 3 cut(s) 67, 182, 268
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 1 cut(s) 713
BaeGI GKGCMC 1 cut(s) 447
BaeI ACNNNNGTAYC 2 cut(s) 546, 579
BamHI GGATCC 1 cut(s) 664
BanI GGYRCC 2 cut(s) 64, 265
BarI GAAGNNNNNNTAC 2 cut(s) 736, 768
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 316
BccI CCATC 2 cut(s) 212, 274
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BciT130I CCWGG 2 cut(s) 318, 709
BclI TGATCA 1 cut(s) 544
BcnI CCSGG 1 cut(s) 440
BcoDI GTCTC 4 cut(s) 21, 93, 292, 326
BfmI CTRYAG 1 cut(s) 770
BfoI RGCGCY 3 cut(s) 68, 183, 269
BisI GCNGC 3 cut(s) 264, 330, 347
BlsI GCNGC 3 cut(s) 265, 331, 348
Bme1390I CCNGG 3 cut(s) 318, 440, 709
BmeRI GACNNNNNGTC 1 cut(s) 34
BmgBI CACGTC 2 cut(s) 33, 671
BmiI GGNNCC 3 cut(s) 66, 267, 666
BmrFI CCNGG 3 cut(s) 318, 440, 709
BmrI ACTGGG 1 cut(s) 242
BmuI ACTGGG 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 440
BsaHI GRCGYC 3 cut(s) 65, 141, 266
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 269, 708
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse118I RCCGGY 2 cut(s) 61, 259
Bse1I ACTGG 2 cut(s) 248, 789
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 2 cut(s) 318, 709
BseDI CCNNGG 2 cut(s) 269, 708
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 3 cut(s) 57, 585, 642
BseNI ACTGG 2 cut(s) 248, 789
BseRI GAGGAG 2 cut(s) 114, 310
BseSI GKGCMC 1 cut(s) 447
BseXI GCAGC 1 cut(s) 316
BseYI CCCAGC 2 cut(s) 183, 188
BshNI GGYRCC 2 cut(s) 64, 265
BsiHKAI GWGCWC 1 cut(s) 447
BsiSI CCGG 4 cut(s) 62, 74, 260, 439
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 4 cut(s) 21, 93, 292, 326
BsmBI CGTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 657
Bso31I GGTCTC 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 3 cut(s) 435, 544, 664
BspACI CCGC 4 cut(s) 119, 263, 332, 347
BspCNI CTCAG 3 cut(s) 56, 586, 643
BspLI GGNNCC 3 cut(s) 66, 267, 666
BspMAI CTGCAG 1 cut(s) 774
BspPI GGATC 3 cut(s) 430, 659, 672
BspT107I GGYRCC 2 cut(s) 64, 265
BspTNI GGTCTC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 474
BsrFI RCCGGY 2 cut(s) 61, 259
BsrI ACTGG 2 cut(s) 248, 789
BssAI RCCGGY 2 cut(s) 61, 259
BssECI CCNNGG 2 cut(s) 269, 708
BssMI GATC 3 cut(s) 435, 544, 664
BssNI GRCGYC 3 cut(s) 65, 141, 266
Bst2UI CCWGG 2 cut(s) 318, 709
Bst4CI ACNGT 3 cut(s) 303, 430, 757
BstACI GRCGYC 3 cut(s) 65, 141, 266
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 3 cut(s) 43, 594, 651
BstH2I RGCGCY 3 cut(s) 68, 183, 269
BstHHI GCGC 3 cut(s) 67, 182, 268
BstKTI GATC 3 cut(s) 438, 547, 667
BstMAI GTCTC 4 cut(s) 21, 93, 292, 326
BstMBI GATC 3 cut(s) 435, 544, 664
BstMWI GCNNNNNNNGC 2 cut(s) 14, 590
BstNI CCWGG 2 cut(s) 318, 709
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 3 cut(s) 316, 438, 707
BstSFI CTRYAG 1 cut(s) 770
BstSLI GKGCMC 1 cut(s) 447
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BtrI CACGTC 2 cut(s) 33, 671
BtsI GCAGTG 1 cut(s) 767
BtsIMutI CAGTG 3 cut(s) 8, 767, 805
Cac8I GCNNGC 1 cut(s) 63
CfoI GCGC 3 cut(s) 67, 182, 268
Cfr10I RCCGGY 2 cut(s) 61, 259
CseI GACGC 1 cut(s) 149
CviAII CATG 2 cut(s) 236, 326
CviJI RGCY 8 cut(s) 17, 104, 187, 379, 484, 593, 617, 637
CviKI_1 RGCY 8 cut(s) 17, 104, 187, 379, 484, 593, 617, 637
DdeI CTNAG 3 cut(s) 43, 594, 651
DinI GGCGCC 2 cut(s) 66, 267
DpnI GATC 3 cut(s) 437, 546, 666
DpnII GATC 3 cut(s) 435, 544, 664
DriI GACNNNNNGTC 1 cut(s) 34
Eam1105I GACNNNNNGTC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 326
Eco57I CTGAAG 2 cut(s) 470, 494
EcoRII CCWGG 2 cut(s) 316, 707
EgeI GGCGCC 2 cut(s) 66, 267
EheI GGCGCC 2 cut(s) 66, 267
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 2 cut(s) 239, 329
FaqI GGGAC 1 cut(s) 657
FatI CATG 2 cut(s) 235, 325
FauNDI CATATG 1 cut(s) 839
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 3 cut(s) 264, 330, 347
Fsp4HI GCNGC 3 cut(s) 264, 330, 347
GlaI GCGC 3 cut(s) 66, 181, 267
GluI GCNGC 3 cut(s) 264, 330, 347
GsaI CCCAGC 2 cut(s) 187, 192
HaeII RGCGCY 3 cut(s) 68, 183, 269
HapII CCGG 4 cut(s) 62, 74, 260, 439
HgaI GACGC 1 cut(s) 149
HhaI GCGC 3 cut(s) 67, 182, 268
Hin1I GRCGYC 3 cut(s) 65, 141, 266
Hin1II CATG 2 cut(s) 239, 329
Hin6I GCGC 3 cut(s) 65, 180, 266
HinP1I GCGC 3 cut(s) 65, 180, 266
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HindIII AAGCTT 3 cut(s) 377, 482, 635
HinfI GANTC 9 cut(s) 41, 47, 53, 95, 455, 490, 610, 713, 795
HpaI GTTAAC 1 cut(s) 538
HpaII CCGG 4 cut(s) 62, 74, 260, 439
HphI GGTGA 1 cut(s) 713
Hpy166II GTNNAC 2 cut(s) 445, 538
Hpy188I TCNGA 5 cut(s) 40, 46, 52, 489, 831
Hpy188III TCNNGA 3 cut(s) 92, 137, 164
Hpy8I GTNNAC 2 cut(s) 445, 538
Hpy99I CGWCG 4 cut(s) 37, 40, 61, 143
HpyAV CCTTC 2 cut(s) 268, 826
HpyCH4III ACNGT 3 cut(s) 303, 430, 757
HpyCH4IV ACGT 5 cut(s) 32, 86, 336, 354, 670
HpyCH4V TGCA 4 cut(s) 363, 445, 772, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 590
HpyF3I CTNAG 3 cut(s) 43, 594, 651
HpySE526I ACGT 5 cut(s) 32, 86, 336, 354, 670
Hsp92I GRCGYC 3 cut(s) 65, 141, 266
Hsp92II CATG 2 cut(s) 239, 329
HspAI GCGC 3 cut(s) 65, 180, 266
KasI GGCGCC 2 cut(s) 64, 265
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 544
KspAI GTTAAC 1 cut(s) 538
Kzo9I GATC 3 cut(s) 435, 544, 664
LmnI GCTCC 1 cut(s) 76
Lsp1109I GCAGC 1 cut(s) 316
MaeII ACGT 5 cut(s) 32, 86, 336, 354, 670
MaeIII GTNAC 2 cut(s) 701, 765
MalI GATC 3 cut(s) 437, 546, 666
MboI GATC 3 cut(s) 435, 544, 664
MboII GAAGA 4 cut(s) 101, 104, 746, 756
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 1 cut(s) 148
Mly113I GGCGCC 2 cut(s) 65, 266
MlyI GAGTC 4 cut(s) 35, 41, 449, 484
MmeI TCCRAC 1 cut(s) 18
MreI CGCCGGCG 1 cut(s) 61
MroNI GCCGGC 1 cut(s) 61
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 2 cut(s) 216, 842
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 4 cut(s) 62, 74, 260, 439
MspR9I CCNGG 3 cut(s) 318, 440, 709
MvaI CCWGG 2 cut(s) 318, 709
MwoI GCNNNNNNNGC 2 cut(s) 14, 590
NaeI GCCGGC 1 cut(s) 63
NarI GGCGCC 2 cut(s) 65, 266
NciI CCSGG 1 cut(s) 440
NdeI CATATG 1 cut(s) 839
NdeII GATC 3 cut(s) 435, 544, 664
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 2 cut(s) 239, 329
NlaIV GGNNCC 3 cut(s) 66, 267, 666
NmeAIII GCCGAG 2 cut(s) 201, 294
NmuCI GTSAC 2 cut(s) 701, 765
NspI RCATGY 1 cut(s) 239
PciI ACATGT 1 cut(s) 235
PdiI GCCGGC 1 cut(s) 63
PfeI GAWTC 5 cut(s) 53, 95, 610, 713, 795
PkrI GCNGC 3 cut(s) 265, 331, 348
PleI GAGTC 4 cut(s) 35, 41, 449, 484
PluTI GGCGCC 2 cut(s) 68, 269
PpsI GAGTC 4 cut(s) 35, 41, 449, 484
PscI ACATGT 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 316, 707
PspFI CCCAGC 2 cut(s) 183, 188
PspGI CCWGG 2 cut(s) 316, 707
PspN4I GGNNCC 3 cut(s) 66, 267, 666
PstI CTGCAG 1 cut(s) 774
PsuI RGATCY 1 cut(s) 664
PvuII CAGCTG 1 cut(s) 104
RseI CAYNNNNRTG 2 cut(s) 216, 842
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 3 cut(s) 264, 330, 347
Sau3AI GATC 3 cut(s) 435, 544, 664
SchI GAGTC 4 cut(s) 35, 41, 449, 484
ScrFI CCNGG 3 cut(s) 318, 440, 709
SduI GDGCHC 1 cut(s) 447
SfcI CTRYAG 1 cut(s) 770
SfoI GGCGCC 2 cut(s) 66, 267
SgrAI CRCCGGYG 1 cut(s) 61
SmiMI CAYNNNNRTG 2 cut(s) 216, 842
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
Sse9I AATT 1 cut(s) 148
SsiI CCGC 4 cut(s) 119, 263, 332, 347
SspDI GGCGCC 2 cut(s) 64, 265
StyD4I CCNGG 3 cut(s) 316, 438, 707
TaaI ACNGT 3 cut(s) 303, 430, 757
TaiI ACGT 5 cut(s) 35, 89, 339, 357, 673
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 148
TauI GCSGC 2 cut(s) 266, 349
TfiI GAWTC 5 cut(s) 53, 95, 610, 713, 795
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 3 cut(s) 15, 774, 805
TseFI GTSAC 2 cut(s) 701, 765
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 2 cut(s) 701, 765
TspDTI ATGAA 4 cut(s) 141, 384, 398, 753
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 3 cut(s) 15, 774, 805
VneI GTGCAC 1 cut(s) 443
XceI RCATGY 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.