Rh7DG344800

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003948
Physical Location & Seq
Reverse (-)
45551568 .. 45552797
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG344800.1

Sequence Viewer

Length: 1230 bp
ATGGGTGGAGCAGCAAGGTTTCGGGCGAGGGCGAAGAAGAGGGCGGAAAAAGAAGGGGAGAGTAGTAGGAAAGCCTATGAGGCCCGGGAAAGGAAGAAACCCGACGAGGCTGAATCATTGCTGTATCTATGCACTTCCGAGATCTACGACCATAAGGGTTTAGCTGGATACCGTGTCCAGGTCATCAGATTGAGCGACTTGTTCATTCCTTCCGATACTCCCACCACCATATTTGGCCCCAAATCCAACTCCAACGAGGTGCTACAACAAGTTGCTTATTTAGACGGCGAACACGTTCCCGGCCATATGGGTTTTGGTGTCTTGGGCTCTCGAATTGTTCTGGCCGGCGGCTGGTTTCTCAATCCGTGGATGAGACAGAGACCTAAACCAACCTATGTTTTGGAGACTGATCCAAGTGTGGAACCCAACCCCAGGTTCATCAGCACCAGAGGTACTCCTAATCCTAAACCCCCCTATATGATTCCGGAATTGGAACCGGAAAAACCTCGTCCGTGGATGCGGGAGGTCGACGGTAAGCTATACGCTCTCTCTGGCGATTACATGGAAGTTGCGGCTTTTGAGGTATTTGACCCCAAAACCAATCATGTGTGGGCTCCTCTCCCCAGTCTTCCAATTGGGAATGATAGGCCTCCCTGGAAAGCGCTTTCTTCATCCTCCTGTGCAGTTGTAGGCACCAAGATCTTGGTCACACTTACGTTAGACTCTAGGGAGACAGTAGTGAAGCTACTCTGCTTCGACGTGGCTCACCCTGAGAGATCATGGACTAGACTTGAACCTCCCTGGTGGCAGTTTCATAGTTCTTTCCCCGAATATTACAACGAGGTTTTAGTGTTGGACTTGGAGGATGACGACTGTGAGAAGCTATTGTTTACTTATGATTTTAATTATTGCCAAATACGAGTCTCCAGCATGAAGCTGTCCAATGAAGGTGAACCTAAGTGTATTCAACCGCTAGATGACACAGATTTGCCTGATGAGTTTAAGAACTTGGATGATTTTTTAGCAACTTCATACAGCTGTGCCCATCTTGGAGGTCGAAGGGTATGCTTTTCATTTGTGCATTTGCTAACTCTTCTCGTGTTCTCTTTCGAATTTTCCTATCCGATTTCTGGAGCATTCTCTGTCAAAGCCCTGGGTCATCGCCTGTTCGAATACAACTCGAGTGAGGAACTTTCTTCTGTCAAATTGGGTGGTTGCTTTCTGCTGTAA

Protein Analysis

409

Amino Acids

46.39

Weight (kDa)

5.61

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 160 - 263 1.7e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 692
AccI GTMKAC 1 cut(s) 528
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 5 cut(s) 44, 348, 520, 572, 971
AclWI GGATC 1 cut(s) 404
AcoI YGGCCR 2 cut(s) 301, 342
AcsI RAATTY 1 cut(s) 1112
AfaI GTAC 1 cut(s) 454
AfeI AGCGCT 1 cut(s) 663
AfiI CCNNNNNNNGG 5 cut(s) 90, 178, 351, 432, 1130
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 2 cut(s) 794, 968
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 5 cut(s) 177, 431, 653, 800, 1152
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 6 cut(s) 164, 538, 745, 883, 937, 1038
AluI AGCT 6 cut(s) 164, 538, 745, 883, 937, 1038
Alw26I GTCTC 5 cut(s) 367, 373, 398, 725, 928
AlwI GGATC 1 cut(s) 404
Ama87I CYCGRG 2 cut(s) 84, 1180
Aor13HI TCCGGA 1 cut(s) 484
Aor51HI AGCGCT 1 cut(s) 663
AoxI GGCC 5 cut(s) 81, 235, 301, 342, 647
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 1112
Asp700I GAANNNNTTC 1 cut(s) 294
AspLEI GCGC 1 cut(s) 664
AspS9I GGNCC 2 cut(s) 82, 236
AsuC2I CCSGG 3 cut(s) 85, 86, 300
AsuHPI GGTGA 2 cut(s) 758, 962
AsuII TTCGAA 2 cut(s) 1110, 1170
AvaI CYCGRG 2 cut(s) 84, 1180
BaeGI GKGCMC 1 cut(s) 1045
BanI GGYRCC 1 cut(s) 692
BanII GRGCYC 2 cut(s) 329, 616
BauI CACGAG 1 cut(s) 1097
BbsI GAAGAC 1 cut(s) 620
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 1053
BceAI ACGGC 1 cut(s) 301
BcgI CGANNNNNNTGC 2 cut(s) 1047, 1081
BciT130I CCWGG 5 cut(s) 179, 433, 655, 802, 1154
BciVI GTATCC 1 cut(s) 161
BcnI CCSGG 3 cut(s) 85, 86, 300
BcoDI GTCTC 5 cut(s) 367, 373, 398, 725, 928
BfaI CTAG 3 cut(s) 726, 786, 974
BfoI RGCGCY 1 cut(s) 665
BfuI GTATCC 1 cut(s) 161
BglI GCCNNNNNGGC 1 cut(s) 80
BglII AGATCT 2 cut(s) 141, 699
BisI GCNGC 3 cut(s) 12, 349, 573
BlsI GCNGC 3 cut(s) 13, 350, 574
Bme1390I CCNGG 8 cut(s) 85, 86, 179, 300, 433, 655, 802, 1154
BmeT110I CYCGRG 2 cut(s) 84, 1180
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 2 cut(s) 82, 236
BmiI GGNNCC 5 cut(s) 238, 423, 495, 615, 694
BmrFI CCNGG 8 cut(s) 85, 86, 179, 300, 433, 655, 802, 1154
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 618
BpiI GAAGAC 1 cut(s) 620
BpmI CTGGAG 2 cut(s) 910, 1152
Bpu14I TTCGAA 2 cut(s) 1110, 1170
BpuMI CCSGG 3 cut(s) 85, 86, 300
BsaI GGTCTC 1 cut(s) 373
BsaJI CCNNGG 8 cut(s) 84, 365, 431, 512, 653, 800, 1152, 1153
BsaWI WCCGGW 2 cut(s) 484, 496
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 178, 351, 432, 1130
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 624
Bse3DI GCAATG 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 5 cut(s) 179, 433, 655, 802, 1154
BseDI CCNNGG 8 cut(s) 84, 365, 431, 512, 653, 800, 1152, 1153
BseGI GGATG 5 cut(s) 375, 522, 671, 871, 1018
BseLI CCNNNNNNNGG 5 cut(s) 90, 178, 351, 432, 1130
BseMI GCAATG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 762
BseNI ACTGG 1 cut(s) 624
BseRI GAGGAG 1 cut(s) 606
BseSI GKGCMC 1 cut(s) 1045
BseXI GCAGC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 702
BshFI GGCC 5 cut(s) 83, 237, 303, 344, 649
BshNI GGYRCC 1 cut(s) 692
BsiHKCI CYCGRG 2 cut(s) 84, 1180
BsiSI CCGG 5 cut(s) 85, 300, 345, 485, 497
BslI CCNNNNNNNGG 5 cut(s) 90, 178, 351, 432, 1130
BsmAI GTCTC 5 cut(s) 367, 373, 398, 725, 928
BsmI GAATGC 1 cut(s) 1136
BsnI GGCC 5 cut(s) 83, 237, 303, 344, 649
Bso31I GGTCTC 1 cut(s) 373
BsoBI CYCGRG 2 cut(s) 84, 1180
Bsp119I TTCGAA 2 cut(s) 1110, 1170
Bsp1286I GDGCHC 3 cut(s) 329, 616, 1045
Bsp13I TCCGGA 1 cut(s) 484
Bsp143I GATC 4 cut(s) 141, 409, 699, 776
BspACI CCGC 5 cut(s) 44, 348, 520, 572, 971
BspANI GGCC 5 cut(s) 83, 237, 303, 344, 649
BspCNI CTCAG 1 cut(s) 763
BspEI TCCGGA 1 cut(s) 484
BspLI GGNNCC 5 cut(s) 238, 423, 495, 615, 694
BspPI GGATC 1 cut(s) 404
BspT104I TTCGAA 2 cut(s) 1110, 1170
BspT107I GGYRCC 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 373
BsrDI GCAATG 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 344
BsrI ACTGG 1 cut(s) 624
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 8 cut(s) 84, 365, 431, 512, 653, 800, 1152, 1153
BssMI GATC 4 cut(s) 141, 409, 699, 776
BssSI CACGAG 1 cut(s) 1097
Bst2BI CACGAG 1 cut(s) 1097
Bst2UI CCWGG 5 cut(s) 179, 433, 655, 802, 1154
Bst4CI ACNGT 4 cut(s) 173, 533, 736, 875
Bst6I CTCTTC 2 cut(s) 32, 1098
BstBI TTCGAA 2 cut(s) 1110, 1170
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 771, 957
BstDSI CCRYGG 2 cut(s) 365, 512
BstF5I GGATG 5 cut(s) 375, 522, 671, 871, 1018
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 4 cut(s) 144, 412, 702, 779
BstMAI GTCTC 5 cut(s) 367, 373, 398, 725, 928
BstMBI GATC 4 cut(s) 141, 409, 699, 776
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 5 cut(s) 179, 433, 655, 802, 1154
BstSCI CCNGG 8 cut(s) 83, 84, 177, 298, 431, 653, 800, 1152
BstSLI GKGCMC 1 cut(s) 1045
BstV1I GCAGC 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 620
BstX2I RGATCY 2 cut(s) 141, 699
BstXI CCANNNNNNTGG 1 cut(s) 703
BstYI RGATCY 2 cut(s) 141, 699
BsuI GTATCC 1 cut(s) 161
BsuRI GGCC 5 cut(s) 83, 237, 303, 344, 649
BtgI CCRYGG 2 cut(s) 365, 512
BtgZI GCGATG 1 cut(s) 1145
BtrI CACGTC 1 cut(s) 760
BtsCI GGATG 5 cut(s) 375, 522, 671, 871, 1018
Cac8I GCNNGC 1 cut(s) 346
CfoI GCGC 1 cut(s) 664
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 82, 236
Cfr9I CCCGGG 1 cut(s) 84
Csp6I GTAC 1 cut(s) 453
CspCI CAANNNNNGTGG 4 cut(s) 214, 249, 1192, 1227
CviAII CATG 4 cut(s) 562, 605, 780, 931
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 2 cut(s) 771, 957
DpnI GATC 4 cut(s) 143, 411, 701, 778
DpnII GATC 4 cut(s) 141, 409, 699, 776
EaeI YGGCCR 2 cut(s) 301, 342
Eam1104I CTCTTC 2 cut(s) 32, 1098
EarI CTCTTC 2 cut(s) 32, 1098
EciI GGCGGA 1 cut(s) 59
Eco147I AGGCCT 1 cut(s) 649
Eco24I GRGCYC 2 cut(s) 329, 616
Eco31I GGTCTC 1 cut(s) 373
Eco47III AGCGCT 1 cut(s) 663
Eco88I CYCGRG 2 cut(s) 84, 1180
EcoRII CCWGG 5 cut(s) 177, 431, 653, 800, 1152
EcoT38I GRGCYC 2 cut(s) 329, 616
FaeI CATG 4 cut(s) 565, 608, 783, 934
FatI CATG 4 cut(s) 561, 604, 779, 930
FauI CCCGC 1 cut(s) 513
FauNDI CATATG 1 cut(s) 306
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 3 cut(s) 12, 349, 573
FokI GGATG 5 cut(s) 382, 529, 658, 878, 1025
FriOI GRGCYC 2 cut(s) 329, 616
Fsp4HI GCNGC 3 cut(s) 12, 349, 573
FspBI CTAG 3 cut(s) 726, 786, 974
GlaI GCGC 1 cut(s) 663
GluI GCNGC 3 cut(s) 12, 349, 573
GsuI CTGGAG 2 cut(s) 910, 1152
HaeII RGCGCY 1 cut(s) 665
HaeIII GGCC 5 cut(s) 83, 237, 303, 344, 649
HapII CCGG 5 cut(s) 85, 300, 345, 485, 497
HhaI GCGC 1 cut(s) 664
Hin1II CATG 4 cut(s) 565, 608, 783, 934
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 4 cut(s) 113, 481, 722, 921
HpaII CCGG 5 cut(s) 85, 300, 345, 485, 497
HphI GGTGA 2 cut(s) 758, 962
Hpy166II GTNNAC 3 cut(s) 529, 891, 953
Hpy188I TCNGA 4 cut(s) 139, 188, 214, 1125
Hpy188III TCNNGA 3 cut(s) 330, 485, 1131
Hpy8I GTNNAC 3 cut(s) 529, 891, 953
Hpy99I CGWCG 3 cut(s) 107, 533, 761
HpyAV CCTTC 4 cut(s) 47, 219, 941, 1053
HpyCH4III ACNGT 4 cut(s) 173, 533, 736, 875
HpyCH4IV ACGT 3 cut(s) 294, 716, 759
HpyCH4V TGCA 3 cut(s) 132, 683, 1081
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 2 cut(s) 771, 957
HpySE526I ACGT 3 cut(s) 294, 716, 759
Hsp92II CATG 4 cut(s) 565, 608, 783, 934
HspAI GCGC 1 cut(s) 662
Kpn2I TCCGGA 1 cut(s) 484
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
Kzo9I GATC 4 cut(s) 141, 409, 699, 776
LmnI GCTCC 3 cut(s) 8, 619, 1133
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 507
MaeI CTAG 3 cut(s) 726, 786, 974
MaeII ACGT 3 cut(s) 294, 716, 759
MaeIII GTNAC 1 cut(s) 706
MalI GATC 4 cut(s) 143, 411, 701, 778
MboI GATC 4 cut(s) 141, 409, 699, 776
MboII GAAGA 7 cut(s) 46, 49, 106, 620, 660, 1085, 1188
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 2 cut(s) 141, 699
MhlI GDGCHC 3 cut(s) 329, 616, 1045
MluCI AATT 6 cut(s) 333, 488, 633, 904, 1112, 1205
MlyI GAGTC 2 cut(s) 716, 930
MmeI TCCRAC 3 cut(s) 270, 276, 834
MroI TCCGGA 1 cut(s) 484
MroNI GCCGGC 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 2 cut(s) 903, 1002
MspA1I CMGCKG 1 cut(s) 1038
MspI CCGG 5 cut(s) 85, 300, 345, 485, 497
MspR9I CCNGG 8 cut(s) 85, 86, 179, 300, 433, 655, 802, 1154
MunI CAATTG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 1136
MvaI CCWGG 5 cut(s) 179, 433, 655, 802, 1154
MwoI GCNNNNNNNGC 1 cut(s) 80
NaeI GCCGGC 1 cut(s) 346
NciI CCSGG 3 cut(s) 85, 86, 300
NdeI CATATG 1 cut(s) 306
NdeII GATC 4 cut(s) 141, 409, 699, 776
NgoMIV GCCGGC 1 cut(s) 344
NlaIII CATG 4 cut(s) 565, 608, 783, 934
NlaIV GGNNCC 5 cut(s) 238, 423, 495, 615, 694
NmuCI GTSAC 1 cut(s) 706
NspV TTCGAA 2 cut(s) 1110, 1170
PaeR7I CTCGAG 1 cut(s) 1180
PasI CCCWGGG 1 cut(s) 1153
PceI AGGCCT 1 cut(s) 649
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 1 cut(s) 1136
PdiI GCCGGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 113, 481
PkrI GCNGC 3 cut(s) 13, 350, 574
PleI GAGTC 2 cut(s) 716, 929
PpsI GAGTC 2 cut(s) 716, 929
Psp6I CCWGG 5 cut(s) 177, 431, 653, 800, 1152
PspGI CCWGG 5 cut(s) 177, 431, 653, 800, 1152
PspN4I GGNNCC 5 cut(s) 238, 423, 495, 615, 694
PspPI GGNCC 2 cut(s) 82, 236
PspXI VCTCGAGB 1 cut(s) 1180
PsuI RGATCY 2 cut(s) 141, 699
PvuII CAGCTG 1 cut(s) 1038
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SalI GTCGAC 1 cut(s) 527
SaqAI TTAA 2 cut(s) 903, 1002
SatI GCNGC 3 cut(s) 12, 349, 573
Sau3AI GATC 4 cut(s) 141, 409, 699, 776
Sau96I GGNCC 2 cut(s) 82, 236
SchI GAGTC 2 cut(s) 716, 930
ScrFI CCNGG 8 cut(s) 85, 86, 179, 300, 433, 655, 802, 1154
SduI GDGCHC 3 cut(s) 329, 616, 1045
SfaNI GCATC 1 cut(s) 507
Sfr274I CTCGAG 1 cut(s) 1180
SfuI TTCGAA 2 cut(s) 1110, 1170
SlaI CTCGAG 1 cut(s) 1180
SmaI CCCGGG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 1180
SmoI CTYRAG 1 cut(s) 1180
Sse9I AATT 6 cut(s) 333, 488, 633, 904, 1112, 1205
SseBI AGGCCT 1 cut(s) 649
SsiI CCGC 5 cut(s) 44, 348, 520, 572, 971
SspI AATATT 1 cut(s) 833
SspMI CTAG 3 cut(s) 726, 786, 974
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 8 cut(s) 83, 84, 177, 298, 431, 653, 800, 1152
TaaI ACNGT 4 cut(s) 173, 533, 736, 875
TaiI ACGT 3 cut(s) 297, 719, 762
TaqI TCGA 7 cut(s) 331, 528, 756, 1057, 1110, 1170, 1181
TasI AATT 6 cut(s) 333, 488, 633, 904, 1112, 1205
TauI GCSGC 2 cut(s) 351, 575
TfiI GAWTC 2 cut(s) 113, 481
Tru1I TTAA 2 cut(s) 903, 1002
Tru9I TTAA 2 cut(s) 903, 1002
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 8 cut(s) 193, 427, 660, 803, 947, 960, 1020, 1062
TspGWI ACGGA 2 cut(s) 354, 501
TspMI CCCGGG 1 cut(s) 84
XapI RAATTY 1 cut(s) 1112
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
XhoI CTCGAG 1 cut(s) 1180
XmaI CCCGGG 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 3 cut(s) 726, 786, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.