Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003948

Physical Location & Seq

Genomic Coordinates Reverse (-)

65923798 .. 65926573

Gene Structure 2776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG432900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGATGGTTCGCTCCAAGAACAAGAAGAAGAGAAGCATCCGTCTTGTGAGGTCTGTCACAGCCGCGGCCTATAAAGACATAAGAAACTTGGAGGATGACGACTGTGAGAAGCTACTGTTTACTTATGATTTTGATTATTGCCAAATACGAGTCTCCAATATGAAGCTGTCCAATGAAGTATATGTCTTAAAGGCTGAAGACTTGAAGAGGATAAAGGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

74

Amino Acids

8.79

Weight (kDa)

9.51

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36820 FvH4_5g06100 FvH4_5g34640 FvH4_5g34640 FvH4_5g34640 FvH4_6g28541 FvH4_6g28610 FvH4_6g50450
rosa_chinensis	RchiOBHm_Chr1g0379901 RchiOBHm_Chr1g0379941
rosa_laevigata	RLG00000026347
rosa_multiflora	Rmu_co8345317.1_g000001 Rmu_sc0004184.1_g000019 Rmu_sc0004184.1_g000023 Rmu_sc0035510.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279840 Rroxscaffold_4G00279850
rosa_rugosa	Rorug01G0410600 Rorug01G0415700 Rorug01G0415800
rosa_samantha	Rh1AG432900 Rh1AG433100 Rh1AG433300 Rh1AG440000 Rh1AG440300 Rh1BG391100 Rh1BG395900 Rh1BG396100 Rh1CG403800 Rh1CG409200 Rh1DG422200 Rh1DG426900 Rh7DG344800
rosa_wichuraiana	Rw1G038280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	63, 65
AcuI	CTGAAG	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	205
AluBI	AGCT	2 cut(s)	112, 166
AluI	AGCT	2 cut(s)	112, 166
Alw26I	GTCTC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	157
BisI	GCNGC	2 cut(s)	63, 66
BlsI	GCNGC	2 cut(s)	64, 67
BmsI	GCATC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	36, 100
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	68
BspACI	CCGC	2 cut(s)	63, 65
BspANI	GGCC	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	104, 117
Bst6I	CTCTTC	2 cut(s)	23, 200
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	36, 100
BstFNI	CGCG	1 cut(s)	65
BstMAI	GTCTC	1 cut(s)	157
BstUI	CGCG	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	36, 100
CciI	TCATGA	1 cut(s)	221
Cfr42I	CCGCGG	1 cut(s)	66
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	5 cut(s)	62, 68, 112, 166, 194
CviKI_1	RGCY	5 cut(s)	62, 68, 112, 166, 194
Eam1104I	CTCTTC	2 cut(s)	23, 200
EarI	CTCTTC	2 cut(s)	23, 200
Eco57I	CTGAAG	1 cut(s)	216
FaeI	CATG	1 cut(s)	225
FaiI	YATR	7 cut(s)	72, 80, 126, 161, 181, 183, 223
FatI	CATG	1 cut(s)	221
Fnu4HI	GCNGC	2 cut(s)	63, 66
FokI	GGATG	2 cut(s)	23, 107
Fsp4HI	GCNGC	2 cut(s)	63, 66
GluI	GCNGC	2 cut(s)	63, 66
HaeIII	GGCC	1 cut(s)	68
Hin1II	CATG	1 cut(s)	225
HinfI	GANTC	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	222
Hpy8I	GTNNAC	1 cut(s)	120
HpyCH4III	ACNGT	2 cut(s)	104, 117
Hsp92II	CATG	1 cut(s)	225
KspI	CCGCGG	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	17
LweI	GCATC	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	55
MboII	GAAGA	4 cut(s)	37, 40, 209, 217
MlyI	GAGTC	1 cut(s)	159
MnlI	CCTC	3 cut(s)	42, 85, 201
MseI	TTAA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	65
NlaIII	CATG	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	64, 67
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
SacII	CCGCGG	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	2 cut(s)	63, 66
SchI	GAGTC	1 cut(s)	159
SetI	ASST	4 cut(s)	53, 114, 168, 219
SfaNI	GCATC	1 cut(s)	45
Sfr303I	CCGCGG	1 cut(s)	66
SgeI	CNNG	7 cut(s)	28, 34, 56, 76, 100, 161, 214
SgrBI	CCGCGG	1 cut(s)	66
SsiI	CCGC	2 cut(s)	63, 65
TaaI	ACNGT	2 cut(s)	104, 117
TauI	GCSGC	2 cut(s)	65, 68
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	176, 189, 210
TspGWI	ACGGA	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.