RLG00000026347

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003948
Physical Location & Seq
Forward (+)
2312735 .. 2313967
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026347

Sequence Viewer

Length: 1017 bp
ATGGGTGGAGGAGCAAGGTCTCGGGCGAGGGCCAAGAAGAGGGCGGGGGAGAGTAGGAAAGCCTACGAGGCTCGGGAAAGGAAGAAACCCGACGAGGCTGAACCATTGCTGTATCTATGCACTTTCGAGATCTACCGTGGAGACGGCGAACACGTTCCCGGCCATATGGGTTTTGGTGTCTTGGGCTCTCGAATTGTTCTGGCCGGCGGCCGGTTTCTCAATCCGTGGATGAGACACAAACCTAAACCAACCTATGTTTTGGAGACTGATCAGAGTGTGGAACCCAACCCCAGGTTCATCAGCACCAGAGGTACTCCTAATCGTAAAACCCCCTATATGATTCCGGAATTGGAACCGGAAAAACGTCGTCCCTGGATGCGGGAGATCGACGGTAAGCTATACGCTCTCTCTGGCGATCACATAGGATATGCGGCTTTTGAGGTTTTTGACCCCAGAACCGACCATGTATGGGCTTCTCTCCCATCGCTTCCAATTAGGAATCTTCCAATTGGGATTGACGGGCTTTCTTTATCCTCGTGTGCCGTTGTGGGCACCAAGATCTTGATCACACTTCCGTTAAAGTCTAGGGTGCGAGTAGTCAAGATACTCTGCTTCGACGTGGCTCACCCTGAGAGATCATGGACTACACTTGAAGAACCACCCTGGTGGCAGTTTAATAGTGTTTTCCCCGACTTTTACAACGGGGTTTTAGTTTTAGACTTGGAGGATGACGACTGTGAGAAGCTACTGTTTACTTATGATTTTGAATATTGCCAAATACGAGTCTCCAGCATGAAGCTGTCCAATGAAGCAACTTCATACAGCTGTGCTCATCTTGGAGGTCGAAGAGTATGCTTTTCATTCGTGCATTTGCTAACTCTTCTTGTGTTCACCTTCGAATTTTCCTATTCGATTTCTGGAATATTCTCTGTCAAAGCCCTGGGTCATCGCCTGTTCGAGTACTACTCGAATGAGGAACTTCGTTCTATCTTTTTGGGTGGTTGCTTTGTGCTGTAA

Protein Analysis

339

Amino Acids

38.55

Weight (kDa)

8.34

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 51 - 216 2.7e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 551
AccIII TCCGGA 1 cut(s) 343
AciI CCGC 4 cut(s) 44, 207, 379, 431
AcoI YGGCCR 3 cut(s) 160, 201, 208
AcsI RAATTY 1 cut(s) 899
AfaI GTAC 2 cut(s) 313, 962
AfiI CCNNNNNNNGG 5 cut(s) 39, 210, 291, 378, 469
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 2 cut(s) 653, 767
AjiI CACGTC 1 cut(s) 619
AjnI CCWGG 4 cut(s) 290, 371, 662, 939
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AleI CACNNNNGTG 1 cut(s) 664
AluBI AGCT 4 cut(s) 397, 745, 799, 825
AluI AGCT 4 cut(s) 397, 745, 799, 825
Alw21I GWGCWC 1 cut(s) 832
Alw26I GTCTC 5 cut(s) 24, 135, 226, 257, 790
Ama87I CYCGRG 2 cut(s) 21, 72
Aor13HI TCCGGA 1 cut(s) 343
AoxI GGCC 4 cut(s) 30, 160, 201, 208
ApoI RAATTY 1 cut(s) 899
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 617, 883
AsuII TTCGAA 1 cut(s) 897
AvaI CYCGRG 2 cut(s) 21, 72
BaeGI GKGCMC 1 cut(s) 554
BanI GGYRCC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 188
BauI CACGAG 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 832
BccI CCATC 1 cut(s) 490
BceAI ACGGC 2 cut(s) 160, 527
BcgI CGANNNNNNTGC 2 cut(s) 834, 868
BciT130I CCWGG 4 cut(s) 292, 373, 664, 941
BclI TGATCA 2 cut(s) 268, 564
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 5 cut(s) 24, 135, 226, 257, 790
BfaI CTAG 1 cut(s) 585
BglI GCCNNNNNGGC 1 cut(s) 68
BglII AGATCT 2 cut(s) 129, 558
BisI GCNGC 2 cut(s) 208, 432
BlsI GCNGC 2 cut(s) 209, 433
BmcAI AGTACT 1 cut(s) 962
Bme1390I CCNGG 5 cut(s) 159, 292, 373, 664, 941
BmeT110I CYCGRG 2 cut(s) 21, 72
BmgBI CACGTC 1 cut(s) 619
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 3 cut(s) 282, 354, 553
BmrFI CCNGG 5 cut(s) 159, 292, 373, 664, 941
BmsI GCATC 1 cut(s) 366
BplI GAGNNNNNCTC 2 cut(s) 950, 982
BpmI CTGGAG 1 cut(s) 772
Bpu14I TTCGAA 1 cut(s) 897
BpuMI CCSGG 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 7 cut(s) 136, 224, 290, 371, 662, 939, 940
BsaWI WCCGGW 2 cut(s) 343, 355
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 210, 291, 378, 469
Bse118I RCCGGY 2 cut(s) 203, 210
Bse3DI GCAATG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 563
BseAI TCCGGA 1 cut(s) 343
BseBI CCWGG 4 cut(s) 292, 373, 664, 941
BseDI CCNNGG 7 cut(s) 136, 224, 290, 371, 662, 939, 940
BseGI GGATG 3 cut(s) 234, 381, 733
BseJI GATNNNNATC 1 cut(s) 563
BseLI CCNNNNNNNGG 5 cut(s) 39, 210, 291, 378, 469
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 621
BseRI GAGGAG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 554
BseX3I CGGCCG 1 cut(s) 208
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 4 cut(s) 32, 162, 203, 210
BshNI GGYRCC 1 cut(s) 551
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 832
BsiHKCI CYCGRG 2 cut(s) 21, 72
BsiSI CCGG 5 cut(s) 159, 204, 211, 344, 356
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 5 cut(s) 39, 210, 291, 378, 469
BsmAI GTCTC 5 cut(s) 24, 135, 226, 257, 790
BsmBI CGTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 4 cut(s) 32, 162, 203, 210
Bso31I GGTCTC 1 cut(s) 24
BsoBI CYCGRG 2 cut(s) 21, 72
Bsp119I TTCGAA 1 cut(s) 897
Bsp1286I GDGCHC 3 cut(s) 188, 554, 832
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 7 cut(s) 129, 268, 384, 415, 558, 564, 635
BspACI CCGC 4 cut(s) 44, 207, 379, 431
BspANI GGCC 4 cut(s) 32, 162, 203, 210
BspCNI CTCAG 1 cut(s) 622
BspEI TCCGGA 1 cut(s) 343
BspLI GGNNCC 3 cut(s) 282, 354, 553
BspT104I TTCGAA 1 cut(s) 897
BspT107I GGYRCC 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 203, 210
BssAI RCCGGY 2 cut(s) 203, 210
BssECI CCNNGG 7 cut(s) 136, 224, 290, 371, 662, 939, 940
BssMI GATC 7 cut(s) 129, 268, 384, 415, 558, 564, 635
BssSI CACGAG 1 cut(s) 535
Bst2BI CACGAG 1 cut(s) 535
Bst2UI CCWGG 4 cut(s) 292, 373, 664, 941
Bst4CI ACNGT 4 cut(s) 137, 392, 737, 750
Bst6I CTCTTC 3 cut(s) 32, 841, 885
BstBI TTCGAA 1 cut(s) 897
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 630
BstDSI CCRYGG 2 cut(s) 136, 224
BstF5I GGATG 3 cut(s) 234, 381, 733
BstKTI GATC 7 cut(s) 132, 271, 387, 418, 561, 567, 638
BstMAI GTCTC 5 cut(s) 24, 135, 226, 257, 790
BstMBI GATC 7 cut(s) 129, 268, 384, 415, 558, 564, 635
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 4 cut(s) 292, 373, 664, 941
BstSCI CCNGG 5 cut(s) 157, 290, 371, 662, 939
BstSLI GKGCMC 1 cut(s) 554
BstX2I RGATCY 2 cut(s) 129, 558
BstXI CCANNNNNNTGG 1 cut(s) 666
BstYI RGATCY 2 cut(s) 129, 558
BstZI CGGCCG 1 cut(s) 208
BsuRI GGCC 4 cut(s) 32, 162, 203, 210
BtgI CCRYGG 2 cut(s) 136, 224
BtgZI GCGATG 2 cut(s) 468, 932
BtrI CACGTC 1 cut(s) 619
BtsCI GGATG 3 cut(s) 234, 381, 733
Cac8I GCNNGC 1 cut(s) 205
Cfr10I RCCGGY 2 cut(s) 203, 210
Cfr13I GGNCC 1 cut(s) 30
Csp6I GTAC 2 cut(s) 312, 961
CviAII CATG 3 cut(s) 464, 639, 793
CviQI GTAC 2 cut(s) 312, 961
DdeI CTNAG 1 cut(s) 630
DpnI GATC 7 cut(s) 131, 270, 386, 417, 560, 566, 637
DpnII GATC 7 cut(s) 129, 268, 384, 415, 558, 564, 635
EaeI YGGCCR 3 cut(s) 160, 201, 208
EagI CGGCCG 1 cut(s) 208
Eam1104I CTCTTC 3 cut(s) 32, 841, 885
EarI CTCTTC 3 cut(s) 32, 841, 885
EclXI CGGCCG 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 24
Eco52I CGGCCG 1 cut(s) 208
Eco88I CYCGRG 2 cut(s) 21, 72
EcoRII CCWGG 4 cut(s) 290, 371, 662, 939
EcoT38I GRGCYC 1 cut(s) 188
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 3 cut(s) 467, 642, 796
FaqI GGGAC 1 cut(s) 354
FatI CATG 3 cut(s) 463, 638, 792
FauI CCCGC 2 cut(s) 37, 372
FauNDI CATATG 1 cut(s) 165
FbaI TGATCA 2 cut(s) 268, 564
Fnu4HI GCNGC 2 cut(s) 208, 432
FokI GGATG 3 cut(s) 241, 388, 740
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 208, 432
FspBI CTAG 1 cut(s) 585
GluI GCNGC 2 cut(s) 208, 432
GsuI CTGGAG 1 cut(s) 772
HaeIII GGCC 4 cut(s) 32, 162, 203, 210
HapII CCGG 5 cut(s) 159, 204, 211, 344, 356
Hin1II CATG 3 cut(s) 467, 642, 796
HinfI GANTC 3 cut(s) 340, 499, 783
HpaII CCGG 5 cut(s) 159, 204, 211, 344, 356
HphI GGTGA 2 cut(s) 617, 883
Hpy166II GTNNAC 2 cut(s) 753, 891
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 7 cut(s) 74, 127, 189, 344, 562, 601, 918
Hpy8I GTNNAC 2 cut(s) 753, 891
Hpy99I CGWCG 4 cut(s) 95, 369, 392, 620
HpyAV CCTTC 1 cut(s) 904
HpyCH4III ACNGT 4 cut(s) 137, 392, 737, 750
HpyCH4IV ACGT 3 cut(s) 153, 364, 618
HpyCH4V TGCA 2 cut(s) 120, 868
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 630
HpySE526I ACGT 3 cut(s) 153, 364, 618
Hsp92II CATG 3 cut(s) 467, 642, 796
Kpn2I TCCGGA 1 cut(s) 343
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Ksp22I TGATCA 2 cut(s) 268, 564
Kzo9I GATC 7 cut(s) 129, 268, 384, 415, 558, 564, 635
LmnI GCTCC 1 cut(s) 11
LweI GCATC 1 cut(s) 366
MaeI CTAG 1 cut(s) 585
MaeII ACGT 3 cut(s) 153, 364, 618
MalI GATC 7 cut(s) 131, 270, 386, 417, 560, 566, 637
MboI GATC 7 cut(s) 129, 268, 384, 415, 558, 564, 635
MboII GAAGA 6 cut(s) 49, 94, 494, 665, 858, 872
MfeI CAATTG 1 cut(s) 507
MflI RGATCY 2 cut(s) 129, 558
MhlI GDGCHC 3 cut(s) 188, 554, 832
MluCI AATT 5 cut(s) 192, 347, 492, 507, 899
MlyI GAGTC 1 cut(s) 792
MroI TCCGGA 1 cut(s) 343
MroNI GCCGGC 1 cut(s) 203
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 2 cut(s) 578, 675
MslI CAYNNNNRTG 1 cut(s) 664
MspA1I CMGCKG 1 cut(s) 825
MspI CCGG 5 cut(s) 159, 204, 211, 344, 356
MspR9I CCNGG 5 cut(s) 159, 292, 373, 664, 941
MunI CAATTG 1 cut(s) 507
MvaI CCWGG 4 cut(s) 292, 373, 664, 941
MwoI GCNNNNNNNGC 1 cut(s) 68
NaeI GCCGGC 1 cut(s) 205
NciI CCSGG 1 cut(s) 159
NdeI CATATG 1 cut(s) 165
NdeII GATC 7 cut(s) 129, 268, 384, 415, 558, 564, 635
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 3 cut(s) 467, 642, 796
NlaIV GGNNCC 3 cut(s) 282, 354, 553
NspV TTCGAA 1 cut(s) 897
OliI CACNNNNGTG 1 cut(s) 664
PasI CCCWGGG 1 cut(s) 940
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdiI GCCGGC 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 340, 499
PkrI GCNGC 2 cut(s) 209, 433
PleI GAGTC 1 cut(s) 791
PpsI GAGTC 1 cut(s) 791
Psp6I CCWGG 4 cut(s) 290, 371, 662, 939
PspGI CCWGG 4 cut(s) 290, 371, 662, 939
PspN4I GGNNCC 3 cut(s) 282, 354, 553
PspPI GGNCC 1 cut(s) 30
PsuI RGATCY 2 cut(s) 129, 558
PvuII CAGCTG 1 cut(s) 825
RsaI GTAC 2 cut(s) 313, 962
RsaNI GTAC 2 cut(s) 312, 961
RseI CAYNNNNRTG 1 cut(s) 664
SaqAI TTAA 2 cut(s) 578, 675
SatI GCNGC 2 cut(s) 208, 432
Sau3AI GATC 7 cut(s) 129, 268, 384, 415, 558, 564, 635
Sau96I GGNCC 1 cut(s) 30
ScaI AGTACT 1 cut(s) 962
SchI GAGTC 1 cut(s) 792
ScrFI CCNGG 5 cut(s) 159, 292, 373, 664, 941
SduI GDGCHC 3 cut(s) 188, 554, 832
SfaNI GCATC 1 cut(s) 366
SfuI TTCGAA 1 cut(s) 897
SmiMI CAYNNNNRTG 1 cut(s) 664
Sse9I AATT 5 cut(s) 192, 347, 492, 507, 899
SsiI CCGC 4 cut(s) 44, 207, 379, 431
SspI AATATT 2 cut(s) 770, 924
SspMI CTAG 1 cut(s) 585
StyD4I CCNGG 5 cut(s) 157, 290, 371, 662, 939
TaaI ACNGT 4 cut(s) 137, 392, 737, 750
TaiI ACGT 3 cut(s) 156, 367, 621
TaqI TCGA 9 cut(s) 126, 190, 387, 615, 844, 897, 911, 957, 968
TasI AATT 5 cut(s) 192, 347, 492, 507, 899
TatI WGTACW 1 cut(s) 960
TauI GCSGC 2 cut(s) 210, 434
TfiI GAWTC 2 cut(s) 340, 499
Tru1I TTAA 2 cut(s) 578, 675
Tru9I TTAA 2 cut(s) 578, 675
TspDTI ATGAA 5 cut(s) 286, 807, 809, 822, 849
TspGWI ACGGA 2 cut(s) 213, 564
XapI RAATTY 1 cut(s) 899
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 1 cut(s) 585
ZrmI AGTACT 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.