Rh1BG395900

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003948
Physical Location & Seq
Forward (+)
52053082 .. 52054647
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG395900.1

Sequence Viewer

Length: 1233 bp
ATGGGCGGAGGAGCAAGGTCTCGGGCGAGGGCCAAGAAGAGGGCGGAGGAGAGTAGGAAAGCCTACGAGGCTCGGGAAAGGAAGAAACCCGACGAGGCTGAACCATTGCTGTATCTATGCACTTTCGAGATCTACCGTGGAGGTTTAGCCGGATACCGTGTCCAGGTCATCAGATTGAGCGACTTGTTCATTCCTTCCGATACTCCCATCACTATATTTTGCCCCAAATCTCAAGCCCCCAAATCCAACTCCACCGAGGTGCTACGACAATTTGCTTTTTTAGACGGCGAACACGTTCCCGGCCATATGGGTTTTGGTTTCTTGGGCTCTCGAATTGTTCTGGCCGGCGGCCGGTTTCTCAATCCGTGGATGAGACACAAACCTAAACCAACCTATGTTTTGGAGACTGATCAGAGTGTGGAACCCAACCCCAGGTTCATCAGCACCAGAGGTACTCCTAATCCTAAACCCCCCTATATGATTCCAGAATTGGAACCGGAAAAACGTCGTCCCTGGATGCGGGAGATCGACGGTAAGCTATACGCTCTCTCTGGCGATCACATAGGATATGCGGCTTTTGAGGTTTTTGACCCCAGAACCGACCACGTATGGGCTTCTCTCCCATCGCTTCCAATTAGGAATCTTCCAATTGGGATTGACGGGCTTTCTTTATCCTCGTGTGCCGTTGTGGGCACCAAGATCTTGATCACACTTCCGTTAAAGTCTAGGGTGGCAGTAGTCAAGATACTCTGCTTCGACGTGGCTCACCCTGAGAGATCATGGACTACACTTGAAGAACCACCCTGGTGGCAGTTTAATAGTGTTTTCCCCGACTTTTACAACGAGGTTTTAGTTTTAGACTTGGAGGATGACGACTGTGAGAAGCTACTGTTTGCTTATGATTTTGAATATTGCCAAATACGAGTCTCCAGCATGAAGCTGTCCAATGAAGGTGAACCTAAGTGTATTCAACCGCTAGATGAGATAGATTTGCCTGATGAGTTTAAGAACTTGGATGATTTTTTAGCAACTTCATACAGCTGTGCTCATCTTGGAGGTCGAAGAGTATGCTTTTCATTCGTGCATTTGCTAACTCTTCTTGTGTTCACCTTCGAATTTTCCTATTCGATTTCTGGAATATTCTCTGTCAAAGCCCTGGGTCATCGCCTGTTCGAGTACTACTCGAATGAGGAACTTCGTTCTATCATTTTGGGTGGTTGCTTTGTGCTGTAA

Protein Analysis

410

Amino Acids

46.62

Weight (kDa)

6.05

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 100 - 263 7.8e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 692
AciI CCGC 6 cut(s) 6, 44, 348, 520, 572, 974
AcoI YGGCCR 3 cut(s) 301, 342, 349
AcsI RAATTY 1 cut(s) 1115
AfaI GTAC 2 cut(s) 454, 1178
AfiI CCNNNNNNNGG 6 cut(s) 39, 163, 351, 432, 519, 610
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 3 cut(s) 794, 908, 971
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 5 cut(s) 162, 431, 512, 803, 1155
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AleI CACNNNNGTG 2 cut(s) 257, 805
AluBI AGCT 4 cut(s) 538, 886, 940, 1041
AluI AGCT 4 cut(s) 538, 886, 940, 1041
Alw21I GWGCWC 1 cut(s) 1048
Alw26I GTCTC 4 cut(s) 24, 367, 398, 931
Ama87I CYCGRG 2 cut(s) 21, 72
AoxI GGCC 4 cut(s) 30, 301, 342, 349
ApoI RAATTY 1 cut(s) 1115
Asp700I GAANNNNTTC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 3 cut(s) 758, 965, 1099
AsuII TTCGAA 1 cut(s) 1113
AvaI CYCGRG 2 cut(s) 21, 72
BaeGI GKGCMC 1 cut(s) 695
BanI GGYRCC 1 cut(s) 692
BanII GRGCYC 1 cut(s) 329
BauI CACGAG 1 cut(s) 676
Bbv12I GWGCWC 1 cut(s) 1048
BccI CCATC 2 cut(s) 215, 631
BceAI ACGGC 2 cut(s) 301, 668
BcgI CGANNNNNNTGC 2 cut(s) 1050, 1084
BciT130I CCWGG 5 cut(s) 164, 433, 514, 805, 1157
BciVI GTATCC 1 cut(s) 146
BclI TGATCA 2 cut(s) 409, 705
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 4 cut(s) 24, 367, 398, 931
BfaI CTAG 2 cut(s) 726, 977
BfuI GTATCC 1 cut(s) 146
BglI GCCNNNNNGGC 1 cut(s) 68
BglII AGATCT 2 cut(s) 129, 699
BisI GCNGC 2 cut(s) 349, 573
BlsI GCNGC 2 cut(s) 350, 574
BmcAI AGTACT 1 cut(s) 1178
Bme1390I CCNGG 6 cut(s) 164, 300, 433, 514, 805, 1157
BmeT110I CYCGRG 2 cut(s) 21, 72
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 3 cut(s) 423, 495, 694
BmrFI CCNGG 6 cut(s) 164, 300, 433, 514, 805, 1157
BmsI GCATC 1 cut(s) 507
BplI GAGNNNNNCTC 2 cut(s) 1166, 1198
BpmI CTGGAG 1 cut(s) 913
Bpu14I TTCGAA 1 cut(s) 1113
BpuEI CTTGAG 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 300
BsaAI YACGTR 1 cut(s) 607
BsaBI GATNNNNATC 1 cut(s) 704
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 8 cut(s) 136, 255, 365, 431, 512, 803, 1155, 1156
BsaWI WCCGGW 1 cut(s) 496
Bsc4I CCNNNNNNNGG 6 cut(s) 39, 163, 351, 432, 519, 610
Bse118I RCCGGY 2 cut(s) 344, 351
Bse3DI GCAATG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 704
BseBI CCWGG 5 cut(s) 164, 433, 514, 805, 1157
BseDI CCNNGG 8 cut(s) 136, 255, 365, 431, 512, 803, 1155, 1156
BseGI GGATG 4 cut(s) 375, 522, 874, 1021
BseJI GATNNNNATC 1 cut(s) 704
BseLI CCNNNNNNNGG 6 cut(s) 39, 163, 351, 432, 519, 610
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 762
BseRI GAGGAG 2 cut(s) 24, 62
BseSI GKGCMC 1 cut(s) 695
BseX3I CGGCCG 1 cut(s) 349
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 4 cut(s) 32, 303, 344, 351
BshNI GGYRCC 1 cut(s) 692
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 1048
BsiHKCI CYCGRG 2 cut(s) 21, 72
BsiSI CCGG 5 cut(s) 150, 300, 345, 352, 497
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 6 cut(s) 39, 163, 351, 432, 519, 610
BsmAI GTCTC 4 cut(s) 24, 367, 398, 931
BsmFI GGGAC 1 cut(s) 495
BsnI GGCC 4 cut(s) 32, 303, 344, 351
Bso31I GGTCTC 1 cut(s) 24
BsoBI CYCGRG 2 cut(s) 21, 72
Bsp119I TTCGAA 1 cut(s) 1113
Bsp1286I GDGCHC 3 cut(s) 329, 695, 1048
Bsp143I GATC 7 cut(s) 129, 409, 525, 556, 699, 705, 776
BspACI CCGC 6 cut(s) 6, 44, 348, 520, 572, 974
BspANI GGCC 4 cut(s) 32, 303, 344, 351
BspCNI CTCAG 1 cut(s) 763
BspLI GGNNCC 3 cut(s) 423, 495, 694
BspT104I TTCGAA 1 cut(s) 1113
BspT107I GGYRCC 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 344, 351
BssAI RCCGGY 2 cut(s) 344, 351
BssECI CCNNGG 8 cut(s) 136, 255, 365, 431, 512, 803, 1155, 1156
BssMI GATC 7 cut(s) 129, 409, 525, 556, 699, 705, 776
BssSI CACGAG 1 cut(s) 676
Bst2BI CACGAG 1 cut(s) 676
Bst2UI CCWGG 5 cut(s) 164, 433, 514, 805, 1157
Bst4CI ACNGT 5 cut(s) 137, 158, 533, 878, 891
Bst6I CTCTTC 3 cut(s) 32, 1057, 1101
BstBAI YACGTR 1 cut(s) 607
BstBI TTCGAA 1 cut(s) 1113
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 771, 960
BstDSI CCRYGG 2 cut(s) 136, 365
BstF5I GGATG 4 cut(s) 375, 522, 874, 1021
BstKTI GATC 7 cut(s) 132, 412, 528, 559, 702, 708, 779
BstMAI GTCTC 4 cut(s) 24, 367, 398, 931
BstMBI GATC 7 cut(s) 129, 409, 525, 556, 699, 705, 776
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 5 cut(s) 164, 433, 514, 805, 1157
BstSCI CCNGG 6 cut(s) 162, 298, 431, 512, 803, 1155
BstSLI GKGCMC 1 cut(s) 695
BstX2I RGATCY 2 cut(s) 129, 699
BstXI CCANNNNNNTGG 1 cut(s) 807
BstYI RGATCY 2 cut(s) 129, 699
BstZI CGGCCG 1 cut(s) 349
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 4 cut(s) 32, 303, 344, 351
BtgI CCRYGG 2 cut(s) 136, 365
BtgZI GCGATG 2 cut(s) 609, 1148
BtrI CACGTC 1 cut(s) 760
BtsCI GGATG 4 cut(s) 375, 522, 874, 1021
Cac8I GCNNGC 1 cut(s) 346
Cfr10I RCCGGY 2 cut(s) 344, 351
Cfr13I GGNCC 1 cut(s) 30
Csp6I GTAC 2 cut(s) 453, 1177
CviAII CATG 2 cut(s) 780, 934
CviQI GTAC 2 cut(s) 453, 1177
DdeI CTNAG 2 cut(s) 771, 960
DpnI GATC 7 cut(s) 131, 411, 527, 558, 701, 707, 778
DpnII GATC 7 cut(s) 129, 409, 525, 556, 699, 705, 776
EaeI YGGCCR 3 cut(s) 301, 342, 349
EagI CGGCCG 1 cut(s) 349
Eam1104I CTCTTC 3 cut(s) 32, 1057, 1101
EarI CTCTTC 3 cut(s) 32, 1057, 1101
EciI GGCGGA 2 cut(s) 21, 59
EclXI CGGCCG 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 329
Eco31I GGTCTC 1 cut(s) 24
Eco52I CGGCCG 1 cut(s) 349
Eco88I CYCGRG 2 cut(s) 21, 72
EcoRII CCWGG 5 cut(s) 162, 431, 512, 803, 1155
EcoT38I GRGCYC 1 cut(s) 329
FaeI CATG 2 cut(s) 783, 937
FaqI GGGAC 1 cut(s) 495
FatI CATG 2 cut(s) 779, 933
FauI CCCGC 1 cut(s) 513
FauNDI CATATG 1 cut(s) 306
FbaI TGATCA 2 cut(s) 409, 705
Fnu4HI GCNGC 2 cut(s) 349, 573
FokI GGATG 4 cut(s) 382, 529, 881, 1028
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 2 cut(s) 349, 573
FspBI CTAG 2 cut(s) 726, 977
GluI GCNGC 2 cut(s) 349, 573
GsuI CTGGAG 1 cut(s) 913
HaeIII GGCC 4 cut(s) 32, 303, 344, 351
HapII CCGG 5 cut(s) 150, 300, 345, 352, 497
Hin1II CATG 2 cut(s) 783, 937
HinfI GANTC 3 cut(s) 481, 640, 924
HpaII CCGG 5 cut(s) 150, 300, 345, 352, 497
HphI GGTGA 3 cut(s) 758, 965, 1099
Hpy166II GTNNAC 2 cut(s) 956, 1107
Hpy188I TCNGA 3 cut(s) 173, 199, 414
Hpy188III TCNNGA 7 cut(s) 74, 127, 330, 485, 703, 742, 1134
Hpy8I GTNNAC 2 cut(s) 956, 1107
Hpy99I CGWCG 4 cut(s) 95, 510, 533, 761
HpyAV CCTTC 3 cut(s) 204, 944, 1120
HpyCH4III ACNGT 5 cut(s) 137, 158, 533, 878, 891
HpyCH4IV ACGT 4 cut(s) 294, 505, 606, 759
HpyCH4V TGCA 2 cut(s) 120, 1084
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 771, 960
HpySE526I ACGT 4 cut(s) 294, 505, 606, 759
Hsp92II CATG 2 cut(s) 783, 937
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
Ksp22I TGATCA 2 cut(s) 409, 705
Kzo9I GATC 7 cut(s) 129, 409, 525, 556, 699, 705, 776
LmnI GCTCC 1 cut(s) 11
LweI GCATC 1 cut(s) 507
MaeI CTAG 2 cut(s) 726, 977
MaeII ACGT 4 cut(s) 294, 505, 606, 759
MalI GATC 7 cut(s) 131, 411, 527, 558, 701, 707, 778
MboI GATC 7 cut(s) 129, 409, 525, 556, 699, 705, 776
MboII GAAGA 6 cut(s) 49, 94, 635, 806, 1074, 1088
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 2 cut(s) 129, 699
MhlI GDGCHC 3 cut(s) 329, 695, 1048
MluCI AATT 6 cut(s) 269, 333, 488, 633, 648, 1115
MlyI GAGTC 1 cut(s) 933
MmeI TCCRAC 1 cut(s) 270
MroNI GCCGGC 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 3 cut(s) 719, 816, 1005
MslI CAYNNNNRTG 2 cut(s) 257, 805
MspA1I CMGCKG 1 cut(s) 1041
MspI CCGG 5 cut(s) 150, 300, 345, 352, 497
MspR9I CCNGG 6 cut(s) 164, 300, 433, 514, 805, 1157
MunI CAATTG 1 cut(s) 648
MvaI CCWGG 5 cut(s) 164, 433, 514, 805, 1157
MwoI GCNNNNNNNGC 1 cut(s) 68
NaeI GCCGGC 1 cut(s) 346
NciI CCSGG 1 cut(s) 300
NdeI CATATG 1 cut(s) 306
NdeII GATC 7 cut(s) 129, 409, 525, 556, 699, 705, 776
NgoMIV GCCGGC 1 cut(s) 344
NlaIII CATG 2 cut(s) 783, 937
NlaIV GGNNCC 3 cut(s) 423, 495, 694
NspV TTCGAA 1 cut(s) 1113
OliI CACNNNNGTG 2 cut(s) 257, 805
PasI CCCWGGG 1 cut(s) 1156
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PdiI GCCGGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 481, 640
PkrI GCNGC 2 cut(s) 350, 574
PleI GAGTC 1 cut(s) 932
PpsI GAGTC 1 cut(s) 932
Ppu21I YACGTR 1 cut(s) 607
Psp6I CCWGG 5 cut(s) 162, 431, 512, 803, 1155
PspGI CCWGG 5 cut(s) 162, 431, 512, 803, 1155
PspN4I GGNNCC 3 cut(s) 423, 495, 694
PspPI GGNCC 1 cut(s) 30
PsuI RGATCY 2 cut(s) 129, 699
PvuII CAGCTG 1 cut(s) 1041
RsaI GTAC 2 cut(s) 454, 1178
RsaNI GTAC 2 cut(s) 453, 1177
RseI CAYNNNNRTG 2 cut(s) 257, 805
SaqAI TTAA 3 cut(s) 719, 816, 1005
SatI GCNGC 2 cut(s) 349, 573
Sau3AI GATC 7 cut(s) 129, 409, 525, 556, 699, 705, 776
Sau96I GGNCC 1 cut(s) 30
ScaI AGTACT 1 cut(s) 1178
SchI GAGTC 1 cut(s) 933
ScrFI CCNGG 6 cut(s) 164, 300, 433, 514, 805, 1157
SduI GDGCHC 3 cut(s) 329, 695, 1048
SfaNI GCATC 1 cut(s) 507
SfuI TTCGAA 1 cut(s) 1113
SmiMI CAYNNNNRTG 2 cut(s) 257, 805
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 6 cut(s) 269, 333, 488, 633, 648, 1115
SsiI CCGC 6 cut(s) 6, 44, 348, 520, 572, 974
SspI AATATT 2 cut(s) 911, 1140
SspMI CTAG 2 cut(s) 726, 977
StyD4I CCNGG 6 cut(s) 162, 298, 431, 512, 803, 1155
TaaI ACNGT 5 cut(s) 137, 158, 533, 878, 891
TaiI ACGT 4 cut(s) 297, 508, 609, 762
TaqI TCGA 9 cut(s) 126, 331, 528, 756, 1060, 1113, 1127, 1173, 1184
TasI AATT 6 cut(s) 269, 333, 488, 633, 648, 1115
TatI WGTACW 1 cut(s) 1176
TauI GCSGC 2 cut(s) 351, 575
TfiI GAWTC 2 cut(s) 481, 640
Tru1I TTAA 3 cut(s) 719, 816, 1005
Tru9I TTAA 3 cut(s) 719, 816, 1005
TspDTI ATGAA 6 cut(s) 178, 427, 950, 963, 1023, 1065
TspGWI ACGGA 2 cut(s) 354, 705
XapI RAATTY 1 cut(s) 1115
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 2 cut(s) 726, 977
ZrmI AGTACT 1 cut(s) 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.