FvH4_5g10330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001341
Physical Location & Seq
Reverse (-)
5899500 .. 5900025
526 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10330.t1

Sequence Viewer

Length: 315 bp
ATGGGTCATCTTCAATTTCTAGCTCGGAAGTCTTGGAAACAGAAAAGAAAGGTTCTTTGGGTGAACTTCTTGCTGGGTTACTTACTGGGTCTTATAACTAAGGAGTTGCTGCTACTCAAGAAGCTTCACTTGGTGCTTGATCTGGATCACACATTGCTCAATACTACGGCGGGGTACTTGACGCCGCAGGAACGATACTGGTTAGAGGGAGATCGCTCTGTTTTCGTGCTGTTTGCTGAAGCCCGGGATTTCTTCACGTTCTTGGTTCTAATTAGCAAGATCATCGACATATTTGCTCTTTTGTATGCGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.24

Weight (kDa)

9.52

Isoelectric Point (pI)

20.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
AciI CCGC 2 cut(s) 170, 185
AclWI GGATC 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 258
AcyI GRCGYC 1 cut(s) 182
AdeI CACNNNGTG 1 cut(s) 133
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 1 cut(s) 14
AjuI GAANNNNNNNTTGG 4 cut(s) 40, 72, 113, 145
AluBI AGCT 2 cut(s) 23, 124
AluI AGCT 2 cut(s) 23, 124
AlwI GGATC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 109
AspLEI GCGC 1 cut(s) 310
AsuC2I CCSGG 2 cut(s) 244, 245
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 243
BbvI GCAGC 1 cut(s) 96
BceAI ACGGC 1 cut(s) 183
BcgI CGANNNNNNTGC 4 cut(s) 265, 275, 299, 309
BcnI CCSGG 2 cut(s) 244, 245
BfaI CTAG 1 cut(s) 20
BisI GCNGC 2 cut(s) 110, 185
BlsI GCNGC 2 cut(s) 111, 186
Bme1390I CCNGG 2 cut(s) 244, 245
BmeT110I CYCGRG 1 cut(s) 243
BmrFI CCNGG 2 cut(s) 244, 245
BmrI ACTGGG 1 cut(s) 95
BmuI ACTGGG 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 244, 245
BsaBI GATNNNNATC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 243
Bse1I ACTGG 2 cut(s) 90, 203
Bse3DI GCAATG 1 cut(s) 152
Bse8I GATNNNNATC 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 243
BseJI GATNNNNATC 1 cut(s) 144
BseMI GCAATG 1 cut(s) 152
BseNI ACTGG 2 cut(s) 90, 203
BseXI GCAGC 1 cut(s) 96
BseYI CCCAGC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 243
BsiSI CCGG 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 243
Bsp143I GATC 4 cut(s) 139, 145, 211, 279
BspACI CCGC 2 cut(s) 170, 185
BspPI GGATC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 152
BsrI ACTGG 2 cut(s) 90, 203
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 4 cut(s) 139, 145, 211, 279
BssNI GRCGYC 1 cut(s) 182
BstACI GRCGYC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 4 cut(s) 142, 148, 214, 282
BstMBI GATC 4 cut(s) 139, 145, 211, 279
BstSCI CCNGG 2 cut(s) 242, 243
BstV1I GCAGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 310
Cfr9I CCCGGG 1 cut(s) 243
CseI GACGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 175
CviJI RGCY 3 cut(s) 23, 124, 242
CviKI_1 RGCY 3 cut(s) 23, 124, 242
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 99
DpnI GATC 4 cut(s) 141, 147, 213, 281
DpnII GATC 4 cut(s) 139, 145, 211, 279
DraIII CACNNNGTG 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 243
FaiI YATR 4 cut(s) 95, 290, 306, 313
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 2 cut(s) 110, 185
Fsp4HI GCNGC 2 cut(s) 110, 185
FspBI CTAG 1 cut(s) 20
GlaI GCGC 1 cut(s) 309
GluI GCNGC 2 cut(s) 110, 185
GsaI CCCAGC 1 cut(s) 77
HapII CCGG 1 cut(s) 244
HgaI GACGC 1 cut(s) 190
HhaI GCGC 1 cut(s) 310
Hin1I GRCGYC 1 cut(s) 182
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HindIII AAGCTT 1 cut(s) 122
HpaII CCGG 1 cut(s) 244
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 2 cut(s) 118, 143
Hpy8I GTNNAC 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 257
Hsp92I GRCGYC 1 cut(s) 182
HspAI GCGC 1 cut(s) 308
Kzo9I GATC 4 cut(s) 139, 145, 211, 279
LpnPI CCDG 6 cut(s) 59, 71, 128, 173, 184, 257
Lsp1109I GCAGC 1 cut(s) 96
MaeI CTAG 1 cut(s) 20
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 77
MalI GATC 4 cut(s) 141, 147, 213, 281
MboI GATC 4 cut(s) 139, 145, 211, 279
MboII GAAGA 1 cut(s) 244
MluCI AATT 2 cut(s) 14, 270
MnlI CCTC 1 cut(s) 199
MspI CCGG 1 cut(s) 244
MspR9I CCNGG 2 cut(s) 244, 245
NciI CCSGG 2 cut(s) 244, 245
NdeII GATC 4 cut(s) 139, 145, 211, 279
PkrI GCNGC 2 cut(s) 111, 186
PsiI TTATAA 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 73
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SatI GCNGC 2 cut(s) 110, 185
Sau3AI GATC 4 cut(s) 139, 145, 211, 279
ScrFI CCNGG 2 cut(s) 244, 245
SetI ASST 4 cut(s) 25, 54, 126, 260
SmaI CCCGGG 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 14, 270
SsiI CCGC 2 cut(s) 170, 185
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 242, 243
TaiI ACGT 1 cut(s) 260
TaqI TCGA 1 cut(s) 285
TasI AATT 2 cut(s) 14, 270
TauI GCSGC 1 cut(s) 187
TseI GCWGC 1 cut(s) 109
TspMI CCCGGG 1 cut(s) 243
XmaI CCCGGG 1 cut(s) 243
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.