Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001341

Physical Location & Seq

Genomic Coordinates Forward (+)

41535180 .. 41536014

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCAACTCTGTCTCCACCGACGTTGTTTCAGGAGAAGGAAAATCTTGATCTCAATGGTAATCTTTCATTTCCTTCTTCTTTCATGTTTCAAATTGTTCTTCTCACCCCTAATTTTGCTAGAGCACTGAGTTTCAATTCCAACCCCAGAAAGCTCCACTTGGTTCTTGATCTTGATCACACACTCCTCCACACCACTCGACTCTGTAATCTGACGCCTGAAGAAGACTATCTCAAGATCGGAACCCATCCTTATCAAGATAAGAGGCATGGACAAAAGGAAAGCCGGGACAATCTAATCGTTGTCGACAAGTATTGTTTCTTTAGGCACAAAATGGGCCTAGCTAAATGCAAGTCTTATGCTGAGTTAAAGACTGATGAATGTGGATATCTGGCATCACTTCTTGAAGTTCTTAAGGTTGTTAGGCATCCTGGAAACTGTTCTGCTAAATGCCACTTCATTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

155

Amino Acids

17.81

Weight (kDa)

8.74

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001341)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10330
rosa_chinensis	RchiOBHm_Chr2g0124471 RchiOBHm_Chr2g0128771 RchiOBHm_Chr3g0488911 RchiOBHm_Chr7g0210561 RchiOBHm_Chr7g0211191 RchiOBHm_Chr7g0211371 RchiOBHm_Chr7g0211471 RchiOBHm_Chr7g0211491
rosa_laevigata	RLG00000003001 RLG00000018803 RLG00000022902
rosa_multiflora	Rmu_co8429473.1_g000001 Rmu_sc0001208.1_g000002 Rmu_sc0001303.1_g000009 Rmu_sc0002283.1_g000067 Rmu_sc0005514.1_g000010 Rmu_sc0007204.1_g000013 Rmu_sc0018619.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018290 Rroxscaffold_2G00115300 Rroxscaffold_2G00115330 Rroxscaffold_2G00118520 Rroxscaffold_2G00118830 Rroxscaffold_2G00119890 Rroxscaffold_3G00247870 Rroxscaffold_7G00186360 Rroxscaffold_7G00207860
rosa_rugosa	Rorug02G0280300 Rorug02G0280400 Rorug07G0125400
rosa_samantha	Rh2AG309500 Rh2AG309600 Rh2BG318300 Rh2BG341600 Rh2CG296400 Rh2CG301400 Rh2DG333500 Rh2DG358300 Rh3AG290600 Rh3DG323500 Rh7AG256900 Rh7AG257900 Rh7BG252000 Rh7CG273400 Rh7CG274500 Rh7CG274600 Rh7DG263300 Rh7DG263400 Rh7DG263900 Rh7DG265100 Rh7DG272000
rosa_wichuraiana	Rw2G025010 Rw7G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	215
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	3 cut(s)	92, 136, 407
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	2 cut(s)	154, 344
AluI	AGCT	2 cut(s)	154, 344
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	337
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	127
BccI	CCATC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	432
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	120, 341
BfrI	CTTAAG	1 cut(s)	413
Bme1390I	CCNGG	2 cut(s)	287, 432
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	287, 432
BmsI	GCATC	2 cut(s)	404, 436
BpiI	GAAGAC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	215
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	432
BseGI	GGATG	2 cut(s)	247, 427
BseJI	GATNNNNATC	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	119, 354
BseRI	GAGGAG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	4 cut(s)	49, 169, 175, 237
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	2 cut(s)	120, 355
BspLI	GGNNCC	1 cut(s)	244
BspTI	CTTAAG	1 cut(s)	413
BssMI	GATC	4 cut(s)	49, 169, 175, 237
BssNI	GRCGYC	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	440
BstACI	GRCGYC	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	413
BstDEI	CTNAG	2 cut(s)	128, 363
BstF5I	GGATG	2 cut(s)	247, 427
BstKTI	GATC	4 cut(s)	52, 172, 178, 240
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	4 cut(s)	49, 169, 175, 237
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	2 cut(s)	285, 430
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	247, 427
BtsIMutI	CAGTG	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	337
CseI	GACGC	1 cut(s)	223
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	2 cut(s)	85, 269
CviJI	RGCY	4 cut(s)	154, 285, 339, 344
CviKI_1	RGCY	4 cut(s)	154, 285, 339, 344
DdeI	CTNAG	2 cut(s)	128, 363
DpnI	GATC	4 cut(s)	51, 171, 177, 239
DpnII	GATC	4 cut(s)	49, 169, 175, 237
Eco32I	GATATC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	430
EcoRV	GATATC	1 cut(s)	389
FaeI	CATG	2 cut(s)	88, 272
FaiI	YATR	3 cut(s)	86, 270, 360
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	2 cut(s)	84, 268
FbaI	TGATCA	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	306
FokI	GGATG	2 cut(s)	234, 414
FspBI	CTAG	2 cut(s)	120, 341
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	1 cut(s)	286
HgaI	GACGC	1 cut(s)	223
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	88, 272
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	1 cut(s)	201
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	213, 242
Hpy188III	TCNNGA	7 cut(s)	32, 47, 167, 173, 235, 257, 404
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	31, 84
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	351
HpyF3I	CTNAG	2 cut(s)	128, 363
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	88, 272
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	49, 169, 175, 237
LmnI	GCTCC	1 cut(s)	159
LpnPI	CCDG	7 cut(s)	17, 160, 231, 299, 377, 417, 444
LweI	GCATC	2 cut(s)	404, 436
MaeI	CTAG	2 cut(s)	120, 341
MaeII	ACGT	1 cut(s)	23
MalI	GATC	4 cut(s)	51, 171, 177, 239
MboI	GATC	4 cut(s)	49, 169, 175, 237
MboII	GAAGA	4 cut(s)	69, 92, 233, 236
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	3 cut(s)	93, 112, 136
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	2 cut(s)	197, 258
MroXI	GAANNNNTTC	1 cut(s)	439
MseI	TTAA	2 cut(s)	368, 414
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	2 cut(s)	287, 432
MvaI	CCWGG	1 cut(s)	432
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	4 cut(s)	49, 169, 175, 237
NlaIII	CATG	2 cut(s)	88, 272
NlaIV	GGNNCC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	430
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	337
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	368, 414
Sau3AI	GATC	4 cut(s)	49, 169, 175, 237
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	287, 432
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	4 cut(s)	26, 156, 346, 420
SfaNI	GCATC	2 cut(s)	404, 436
SmlI	CTYRAG	2 cut(s)	233, 413
SmoI	CTYRAG	2 cut(s)	233, 413
Sse9I	AATT	3 cut(s)	93, 112, 136
SspMI	CTAG	2 cut(s)	120, 341
StyD4I	CCNGG	2 cut(s)	285, 430
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	199, 306
TasI	AATT	3 cut(s)	93, 112, 136
Tru1I	TTAA	2 cut(s)	368, 414
Tru9I	TTAA	2 cut(s)	368, 414
TscAI	CASTG	1 cut(s)	132
TspDTI	ATGAA	4 cut(s)	57, 73, 393, 448
TspRI	CASTG	1 cut(s)	132
Vha464I	CTTAAG	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	439
XspI	CTAG	2 cut(s)	120, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.