Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001341

Physical Location & Seq

Genomic Coordinates Forward (+)

50032041 .. 50034275

Gene Structure 2235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTTTGAGCTGTACATATACACAAAGGGTAACCGGTACTATGCGGGTCTAATGGCTGCCCTGCTTGATCCTAGGAAGGAGTATTTCCCTTCCAGTTCTAGAGTCATATCGTGCGAGGATCACGGAATCGTGGGGCGATATAAGAGTCTGGATGCTGTGGTTGGCTGCAATTATTCTAATGTTTTGATCCTTGATGATACAGAAGAGGCATGGGCAAAGGAAAGCCGGGACAATCTAATCGTTGTCGACAAGTATTGTTTCTTTAGGCACAAAATGGGCCTAGCTAAGTCTTATGCTGAGTTAAAGACTGATGAATGTGGATATCTTGCAGCAGTTCTTGAAGTGCTTGAGGTAATCAACCGTGTCTTCTGTGATGAACTAGCCAGAAATCCTTCTGGTGTAGATGTGAGGGATGTGTTACAACTGTTTGGAAGCAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

147

Amino Acids

16.69

Weight (kDa)

5.05

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	1 - 87	1.9e-09	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001341)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10330
rosa_chinensis	RchiOBHm_Chr2g0124471 RchiOBHm_Chr2g0128771 RchiOBHm_Chr3g0488911 RchiOBHm_Chr7g0210561 RchiOBHm_Chr7g0211191 RchiOBHm_Chr7g0211371 RchiOBHm_Chr7g0211471 RchiOBHm_Chr7g0211491
rosa_laevigata	RLG00000003001 RLG00000018803 RLG00000022902
rosa_multiflora	Rmu_co8429473.1_g000001 Rmu_sc0001208.1_g000002 Rmu_sc0001303.1_g000009 Rmu_sc0002283.1_g000067 Rmu_sc0005514.1_g000010 Rmu_sc0007204.1_g000013 Rmu_sc0018619.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018290 Rroxscaffold_2G00115300 Rroxscaffold_2G00115330 Rroxscaffold_2G00118520 Rroxscaffold_2G00118830 Rroxscaffold_2G00119890 Rroxscaffold_3G00247870 Rroxscaffold_7G00186360 Rroxscaffold_7G00207860
rosa_rugosa	Rorug02G0280300 Rorug02G0280400 Rorug07G0125400
rosa_samantha	Rh2AG309500 Rh2AG309600 Rh2BG318300 Rh2BG341600 Rh2CG296400 Rh2CG301400 Rh2DG333500 Rh2DG358300 Rh3AG290600 Rh3DG323500 Rh7AG256900 Rh7AG257900 Rh7BG252000 Rh7CG273400 Rh7CG274500 Rh7CG274600 Rh7DG263300 Rh7DG263400 Rh7DG263900 Rh7DG265100 Rh7DG272000
rosa_wichuraiana	Rw2G025010 Rw7G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	246
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	3 cut(s)	62, 126, 181
AfaI	GTAC	2 cut(s)	14, 38
AgeI	ACCGGT	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	341
AluBI	AGCT	2 cut(s)	10, 284
AluI	AGCT	2 cut(s)	10, 284
AlwI	GGATC	3 cut(s)	62, 126, 181
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	3 cut(s)	56, 165, 329
AsiGI	ACCGGT	1 cut(s)	33
Asp700I	GAANNNNTTC	1 cut(s)	391
AspA2I	CCTAGG	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	227
AvrII	CCTAGG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	358
BbvI	GCAGC	3 cut(s)	43, 152, 341
BcnI	CCSGG	1 cut(s)	227
BfaI	CTAG	4 cut(s)	72, 99, 281, 380
BisI	GCNGC	3 cut(s)	57, 166, 330
BlnI	CCTAGG	1 cut(s)	71
BlsI	GCNGC	3 cut(s)	58, 167, 331
Bme1390I	CCNGG	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	2 cut(s)	157, 418
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	43, 152, 341
BshFI	GGCC	1 cut(s)	279
BshTI	ACCGGT	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	34, 226
BslFI	GGGAC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	279
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	67, 118, 186
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	289
BspPI	GGATC	3 cut(s)	62, 126, 181
BsrFI	RCCGGY	1 cut(s)	33
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	3 cut(s)	67, 118, 186
BssT1I	CCWWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	362, 426
Bst6I	CTCTTC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	285, 297
BstEII	GGTNACC	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	157, 418
BstKTI	GATC	3 cut(s)	70, 121, 189
BstMBI	GATC	3 cut(s)	67, 118, 186
BstPI	GGTNACC	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	43, 152, 341
BstV2I	GAAGAC	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	157, 418
Cfr10I	RCCGGY	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	13, 37
CspAI	ACCGGT	1 cut(s)	33
CviAII	CATG	1 cut(s)	210
CviJI	RGCY	7 cut(s)	10, 56, 165, 225, 279, 284, 383
CviKI_1	RGCY	7 cut(s)	10, 56, 165, 225, 279, 284, 383
CviQI	GTAC	2 cut(s)	13, 37
DdeI	CTNAG	2 cut(s)	285, 297
DpnI	GATC	3 cut(s)	69, 120, 188
DpnII	GATC	3 cut(s)	67, 118, 186
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	29
EcoO65I	GGTNACC	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	1 cut(s)	213
FaiI	YATR	7 cut(s)	17, 19, 42, 107, 141, 211, 294
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	1 cut(s)	209
FauI	CCCGC	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	57, 166, 330
FokI	GGATG	2 cut(s)	164, 425
Fsp4HI	GCNGC	3 cut(s)	57, 166, 330
FspBI	CTAG	4 cut(s)	72, 99, 281, 380
GluI	GCNGC	3 cut(s)	57, 166, 330
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	2 cut(s)	34, 226
Hin1II	CATG	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	3 cut(s)	102, 126, 145
HpaII	CCGG	2 cut(s)	34, 226
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188III	TCNNGA	3 cut(s)	99, 149, 338
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	3 cut(s)	70, 99, 402
HpyCH4III	ACNGT	2 cut(s)	362, 426
HpyCH4V	TGCA	2 cut(s)	168, 329
HpyF3I	CTNAG	2 cut(s)	285, 297
Hsp92II	CATG	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	67, 118, 186
LpnPI	CCDG	7 cut(s)	47, 74, 106, 134, 239, 381, 397
Lsp1109I	GCAGC	3 cut(s)	43, 152, 341
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	4 cut(s)	72, 99, 281, 380
MaeIII	GTNAC	2 cut(s)	29, 417
MalI	GATC	3 cut(s)	69, 120, 188
MboI	GATC	3 cut(s)	67, 118, 186
MboII	GAAGA	2 cut(s)	215, 358
MfeI	CAATTG	1 cut(s)	436
MluCI	AATT	2 cut(s)	169, 436
MlyI	GAGTC	2 cut(s)	111, 154
MnlI	CCTC	4 cut(s)	109, 199, 343, 402
MroXI	GAANNNNTTC	1 cut(s)	391
MseI	TTAA	1 cut(s)	302
MspI	CCGG	2 cut(s)	34, 226
MspR9I	CCNGG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	436
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	3 cut(s)	67, 118, 186
NlaIII	CATG	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	126
PinAI	ACCGGT	1 cut(s)	33
PkrI	GCNGC	3 cut(s)	58, 167, 331
PleI	GAGTC	2 cut(s)	110, 153
PpsI	GAGTC	2 cut(s)	110, 153
PspEI	GGTNACC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	277
RsaI	GTAC	2 cut(s)	14, 38
RsaNI	GTAC	2 cut(s)	13, 37
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	3 cut(s)	57, 166, 330
Sau3AI	GATC	3 cut(s)	67, 118, 186
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	2 cut(s)	111, 154
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	3 cut(s)	12, 286, 354
SfaNI	GCATC	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	2 cut(s)	169, 436
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	4 cut(s)	72, 99, 281, 380
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	362, 426
TaqI	TCGA	1 cut(s)	246
TasI	AATT	2 cut(s)	169, 436
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseI	GCWGC	3 cut(s)	56, 165, 329
TspDTI	ATGAA	2 cut(s)	327, 390
TspGWI	ACGGA	1 cut(s)	138
XbaI	TCTAGA	1 cut(s)	98
XmaJI	CCTAGG	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	391
XspI	CTAG	4 cut(s)	72, 99, 281, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.