Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001341

Physical Location & Seq

Genomic Coordinates Reverse (-)

28012794 .. 28013471

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG263300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAAAACCAACGTTGTTTCAGGAAAATCTGGATGTCAATGGTAATGTTTCATTTCCAAAAGCTTCTTCTTTTCAAGTTTCAAGTTGTTGTTCTAACCCTAATTTTGCCAGAGCACTGAGTTTCAATTCCAACTCCAGAAAGCTCCACTTGGTTCTTGATCTGGATCACACACTCCTCCACACCACTCAACTCTGTAATCTGACACCTGAAGAAGACTATCTCAAGATCGGAACCCATCCTCATCGAGATGTTTTCGTGCTTGAAACTGTGATCACCAAGCTCAGGCCCTTTGTCAGGAGATTCTTGGATGAAGCCAGCAAGATGTTTGAGCTGTATATATACACAAAGGGTAACCGGTACTATGCGGGTCTAATGGCTGCCCTGCTTGATCCTAGGAAGCAGTATTTCCCTTCCAGTTCTAGAGTCATATCGTGCGAGGATCATGGAATCTTGGGGAGATCTAAGAGTCTGGATGCTGTGGTTGGCTGCAATTATTCCAATGTTTTGATCCTTGATGATACAGAAGAGGCATGGGCAAAGGAAAGCCGGGACAATCTAATCGTTGTCGACAAGTATTGTTTCTTTAGGCACAAAATGGGCCTACCTAAACGCAAGTCTTATGCTCACAAGGCTCTTACCTCCTTCACAAATGGCCATTCTTGTCATATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

225

Amino Acids

25.6

Weight (kDa)

8.78

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	50 - 195	1e-23	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001341)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10330
rosa_chinensis	RchiOBHm_Chr2g0124471 RchiOBHm_Chr2g0128771 RchiOBHm_Chr3g0488911 RchiOBHm_Chr7g0210561 RchiOBHm_Chr7g0211191 RchiOBHm_Chr7g0211371 RchiOBHm_Chr7g0211471 RchiOBHm_Chr7g0211491
rosa_laevigata	RLG00000003001 RLG00000018803 RLG00000022902
rosa_multiflora	Rmu_co8429473.1_g000001 Rmu_sc0001208.1_g000002 Rmu_sc0001303.1_g000009 Rmu_sc0002283.1_g000067 Rmu_sc0005514.1_g000010 Rmu_sc0007204.1_g000013 Rmu_sc0018619.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018290 Rroxscaffold_2G00115300 Rroxscaffold_2G00115330 Rroxscaffold_2G00118520 Rroxscaffold_2G00118830 Rroxscaffold_2G00119890 Rroxscaffold_3G00247870 Rroxscaffold_7G00186360 Rroxscaffold_7G00207860
rosa_rugosa	Rorug02G0280300 Rorug02G0280400 Rorug07G0125400
rosa_samantha	Rh2AG309500 Rh2AG309600 Rh2BG318300 Rh2BG341600 Rh2CG296400 Rh2CG301400 Rh2DG333500 Rh2DG358300 Rh3AG290600 Rh3DG323500 Rh7AG256900 Rh7AG257900 Rh7BG252000 Rh7CG273400 Rh7CG274500 Rh7CG274600 Rh7DG263300 Rh7DG263400 Rh7DG263900 Rh7DG265100 Rh7DG272000
rosa_wichuraiana	Rw2G025010 Rw7G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	570
AciI	CCGC	1 cut(s)	368
AclI	AACGTT	1 cut(s)	14
AclWI	GGATC	4 cut(s)	174, 386, 450, 505
AcoI	YGGCCR	1 cut(s)	655
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	285, 297
AgeI	ACCGGT	1 cut(s)	357
AgsI	TTSAA	4 cut(s)	77, 84, 127, 266
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	4 cut(s)	65, 145, 283, 334
AluI	AGCT	4 cut(s)	65, 145, 283, 334
Alw21I	GWGCWC	1 cut(s)	118
AlwI	GGATC	4 cut(s)	174, 386, 450, 505
AoxI	GGCC	3 cut(s)	287, 601, 655
ApeKI	GCWGC	2 cut(s)	380, 489
AsiGI	ACCGGT	1 cut(s)	357
AspA2I	CCTAGG	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	288, 601
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	268
AvrII	CCTAGG	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	367, 476
BccI	CCATC	1 cut(s)	246
BclI	TGATCA	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	551
BfaI	CTAG	2 cut(s)	396, 423
BglII	AGATCT	1 cut(s)	461
BisI	GCNGC	2 cut(s)	381, 490
BlnI	CCTAGG	1 cut(s)	395
BlsI	GCNGC	2 cut(s)	382, 491
Bme1390I	CCNGG	1 cut(s)	551
BmgT120I	GGNCC	2 cut(s)	288, 601
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	551
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	395
BsaWI	WCCGGW	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 297
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	4 cut(s)	40, 238, 316, 481
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	285, 297
BseMII	CTCAG	2 cut(s)	110, 298
BseNI	ACTGG	1 cut(s)	417
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	367, 476
BshFI	GGCC	3 cut(s)	289, 603, 657
BshTI	ACCGGT	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	2 cut(s)	358, 550
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	2 cut(s)	285, 297
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	3 cut(s)	289, 603, 657
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	8 cut(s)	160, 166, 228, 273, 391, 442, 461, 510
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	3 cut(s)	289, 603, 657
BspCNI	CTCAG	2 cut(s)	111, 297
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	4 cut(s)	174, 386, 450, 505
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	417
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	8 cut(s)	160, 166, 228, 273, 391, 442, 461, 510
BssT1I	CCWWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	3 cut(s)	119, 284, 465
BstEII	GGTNACC	1 cut(s)	353
BstENI	CCTNNNNNAGG	1 cut(s)	295
BstF5I	GGATG	4 cut(s)	40, 238, 316, 481
BstKTI	GATC	8 cut(s)	163, 169, 231, 276, 394, 445, 464, 513
BstMBI	GATC	8 cut(s)	160, 166, 228, 273, 391, 442, 461, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	632
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	549
BstV1I	GCAGC	2 cut(s)	367, 476
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BsuRI	GGCC	3 cut(s)	289, 603, 657
BtsCI	GGATG	4 cut(s)	40, 238, 316, 481
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	2 cut(s)	288, 601
Csp6I	GTAC	1 cut(s)	361
CspAI	ACCGGT	1 cut(s)	357
CviAII	CATG	2 cut(s)	446, 534
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	3 cut(s)	119, 284, 465
DpnI	GATC	8 cut(s)	162, 168, 230, 275, 393, 444, 463, 512
DpnII	GATC	8 cut(s)	160, 166, 228, 273, 391, 442, 461, 510
EaeI	YGGCCR	1 cut(s)	655
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	231
Eco91I	GGTNACC	1 cut(s)	353
EcoNI	CCTNNNNNAGG	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	288
EcoO65I	GGTNACC	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	2 cut(s)	449, 537
FaiI	YATR	9 cut(s)	339, 341, 343, 366, 431, 447, 535, 624, 669
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	2 cut(s)	445, 533
FauI	CCCGC	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	2 cut(s)	381, 490
FokI	GGATG	4 cut(s)	47, 225, 323, 488
Fsp4HI	GCNGC	2 cut(s)	381, 490
FspBI	CTAG	2 cut(s)	396, 423
GluI	GCNGC	2 cut(s)	381, 490
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	3 cut(s)	289, 603, 657
HapII	CCGG	2 cut(s)	358, 550
Hin1II	CATG	2 cut(s)	449, 537
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	4 cut(s)	303, 426, 450, 469
HpaII	CCGG	2 cut(s)	358, 550
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	2 cut(s)	204, 233
Hpy8I	GTNNAC	1 cut(s)	571
HpyAV	CCTTC	2 cut(s)	423, 655
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	632
HpyF3I	CTNAG	3 cut(s)	119, 284, 465
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	449, 537
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	8 cut(s)	160, 166, 228, 273, 391, 442, 461, 510
LmnI	GCTCC	1 cut(s)	150
Lsp1109I	GCAGC	2 cut(s)	367, 476
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	2 cut(s)	396, 423
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	8 cut(s)	162, 168, 230, 275, 393, 444, 463, 512
MboI	GATC	8 cut(s)	160, 166, 228, 273, 391, 442, 461, 510
MboII	GAAGA	4 cut(s)	60, 224, 227, 539
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	657
MluCI	AATT	3 cut(s)	103, 127, 493
MluNI	TGGCCA	1 cut(s)	657
MlyI	GAGTC	2 cut(s)	435, 478
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	5 cut(s)	188, 252, 433, 523, 652
Mox20I	TGGCCA	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	657
MseI	TTAA	1 cut(s)	676
MslI	CAYNNNNRTG	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	657
MspI	CCGG	2 cut(s)	358, 550
MspR9I	CCNGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	1 cut(s)	632
NciI	CCSGG	1 cut(s)	551
NdeII	GATC	8 cut(s)	160, 166, 228, 273, 391, 442, 461, 510
NlaIII	CATG	2 cut(s)	449, 537
NlaIV	GGNNCC	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	303, 450
PinAI	ACCGGT	1 cut(s)	357
PkrI	GCNGC	2 cut(s)	382, 491
PleI	GAGTC	2 cut(s)	434, 477
PpsI	GAGTC	2 cut(s)	434, 477
Psp1406I	AACGTT	1 cut(s)	14
PspEI	GGTNACC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	288, 601
PsuI	RGATCY	1 cut(s)	461
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	249
SalI	GTCGAC	1 cut(s)	569
SaqAI	TTAA	1 cut(s)	676
SatI	GCNGC	2 cut(s)	381, 490
Sau3AI	GATC	8 cut(s)	160, 166, 228, 273, 391, 442, 461, 510
Sau96I	GGNCC	2 cut(s)	288, 601
SchI	GAGTC	2 cut(s)	435, 478
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	8 cut(s)	17, 67, 147, 211, 285, 336, 610, 644
SfaNI	GCATC	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	103, 127, 493
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	2 cut(s)	396, 423
StyD4I	CCNGG	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	2 cut(s)	247, 570
TasI	AATT	3 cut(s)	103, 127, 493
TfiI	GAWTC	2 cut(s)	303, 450
Tru1I	TTAA	1 cut(s)	676
Tru9I	TTAA	1 cut(s)	676
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	2 cut(s)	380, 489
TspDTI	ATGAA	2 cut(s)	42, 327
TspRI	CASTG	1 cut(s)	123
XagI	CCTNNNNNAGG	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	422
XmaJI	CCTAGG	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	570
XspI	CTAG	2 cut(s)	396, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.