Rroxscaffold_7G00207860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001341
Physical Location & Seq
Reverse (-)
57850558 .. 57855729
5172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207860.1

Sequence Viewer

Length: 567 bp
ATGGAAATTTCCAAAATCATTTTTTCTGGGTTTCCATTTCGGAAACCCCGAAAACCCATTTCTCTCTCTCTTCCTCACGAAACCGAAGACGACGGAAACAGAGCCTCCTTCGCCGGCGTCTATCTCCCACTTCCGGGCCATCTTTGGACGAGCAACCAAGTCCGGCAGCATCGCCTCACTCCTCCGAAGTCATCCGTGGCAACCTTGCACGGCGGCGCGGCCCCTAGGCTGCGGCGGCGGCCCGCCATTACCATTTCACTCTTGACTCACCGGAGATGGCAACTGTTTCGGCGGAACTCAATGAGCACCGAGTTTCAATTCCAACTCCGGAAGCTCCACTTGGTTCTTGATCTGGATCACACACACTTCTCCACACCATTCGACTCGGTAATCGACACCGAAGAAGACTACCTCAAGATCGGCACCCATACTCATCGAGATGTTTTCGTGCTTGAAACCGTGATCACCAAGCCCGGGCCAGCGAGTAACTACCCATCGAACTGGAGATTTGTCTCTCACGGTCTCACTCTCTCCTCCTCCGCCGTGCCGCTGCAGGTCCAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.49

Weight (kDa)

10.3

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 544
AccB1I GGYRCC 1 cut(s) 422
AccII CGCG 1 cut(s) 218
AccIII TCCGGA 1 cut(s) 327
AciI CCGC 9 cut(s) 213, 218, 232, 235, 238, 243, 292, 540, 548
AclWI GGATC 1 cut(s) 363
AcsI RAATTY 1 cut(s) 6
AcyI GRCGYC 1 cut(s) 117
AfiI CCNNNNNNNGG 3 cut(s) 133, 134, 474
AgsI TTSAA 2 cut(s) 317, 455
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AluBI AGCT 1 cut(s) 334
AluI AGCT 1 cut(s) 334
Alw21I GWGCWC 1 cut(s) 308
Alw26I GTCTC 2 cut(s) 517, 527
AlwI GGATC 1 cut(s) 363
Ama87I CYCGRG 1 cut(s) 473
Aor13HI TCCGGA 1 cut(s) 327
AoxI GGCC 4 cut(s) 136, 219, 239, 476
ApeKI GCWGC 3 cut(s) 166, 229, 550
ApoI RAATTY 1 cut(s) 6
AspA2I CCTAGG 1 cut(s) 224
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 5 cut(s) 136, 220, 240, 476, 556
AsuC2I CCSGG 3 cut(s) 135, 474, 475
AsuHPI GGTGA 2 cut(s) 260, 457
AvaI CYCGRG 1 cut(s) 473
AvaII GGWCC 1 cut(s) 556
AvrII CCTAGG 1 cut(s) 224
BanI GGYRCC 1 cut(s) 422
BbsI GAAGAC 2 cut(s) 93, 411
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 3 cut(s) 178, 216, 537
BccI CCATC 3 cut(s) 147, 270, 502
BceAI ACGGC 2 cut(s) 226, 527
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BclI TGATCA 1 cut(s) 462
BcnI CCSGG 3 cut(s) 135, 474, 475
BcoDI GTCTC 2 cut(s) 517, 527
BfaI CTAG 2 cut(s) 225, 565
BfmI CTRYAG 1 cut(s) 551
BfuAI ACCTGC 1 cut(s) 544
BisI GCNGC 9 cut(s) 167, 214, 219, 230, 233, 236, 239, 548, 551
BlnI CCTAGG 1 cut(s) 224
BlsI GCNGC 9 cut(s) 168, 215, 220, 231, 234, 237, 240, 549, 552
Bme1390I CCNGG 3 cut(s) 135, 474, 475
Bme18I GGWCC 1 cut(s) 556
BmeT110I CYCGRG 1 cut(s) 473
BmgT120I GGNCC 5 cut(s) 136, 220, 240, 476, 556
BmiI GGNNCC 2 cut(s) 222, 424
BmrFI CCNGG 3 cut(s) 135, 474, 475
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 2 cut(s) 93, 411
BpmI CTGGAG 1 cut(s) 523
BpuEI CTTGAG 1 cut(s) 398
BpuMI CCSGG 3 cut(s) 135, 474, 475
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 3 cut(s) 195, 224, 473
BsaWI WCCGGW 2 cut(s) 270, 327
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 134, 474
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 506
Bse8I GATNNNNATC 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 327
BseDI CCNNGG 3 cut(s) 195, 224, 473
BseGI GGATG 1 cut(s) 191
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 3 cut(s) 133, 134, 474
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 3 cut(s) 171, 523, 526
BseXI GCAGC 3 cut(s) 178, 216, 537
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 4 cut(s) 138, 221, 241, 478
BshNI GGYRCC 1 cut(s) 422
BsiHKAI GWGCWC 1 cut(s) 308
BsiHKCI CYCGRG 1 cut(s) 473
BsiSI CCGG 6 cut(s) 114, 134, 163, 271, 328, 474
BslI CCNNNNNNNGG 3 cut(s) 133, 134, 474
BsmAI GTCTC 2 cut(s) 517, 527
BsnI GGCC 4 cut(s) 138, 221, 241, 478
Bso31I GGTCTC 1 cut(s) 527
BsoBI CYCGRG 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 308
Bsp13I TCCGGA 1 cut(s) 327
Bsp143I GATC 4 cut(s) 349, 355, 417, 462
BspACI CCGC 9 cut(s) 213, 218, 232, 235, 238, 243, 292, 540, 548
BspANI GGCC 4 cut(s) 138, 221, 241, 478
BspEI TCCGGA 1 cut(s) 327
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 2 cut(s) 222, 424
BspMAI CTGCAG 1 cut(s) 555
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 422
BspTNI GGTCTC 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 3 cut(s) 195, 224, 473
BssMI GATC 4 cut(s) 349, 355, 417, 462
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 224
Bst4CI ACNGT 3 cut(s) 285, 460, 521
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 115, 243, 480
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 4 cut(s) 352, 358, 420, 465
BstMAI GTCTC 2 cut(s) 517, 527
BstMBI GATC 4 cut(s) 349, 355, 417, 462
BstMWI GCNNNNNNNGC 3 cut(s) 110, 235, 238
BstSCI CCNGG 3 cut(s) 133, 472, 473
BstSFI CTRYAG 1 cut(s) 551
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 3 cut(s) 178, 216, 537
BstV2I GAAGAC 2 cut(s) 93, 411
BstXI CCANNNNNNTGG 1 cut(s) 501
BsuRI GGCC 4 cut(s) 138, 221, 241, 478
BtgI CCRYGG 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 155
BtsCI GGATG 1 cut(s) 191
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 3 cut(s) 115, 243, 480
CfoI GCGC 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 5 cut(s) 136, 220, 240, 476, 556
Cfr9I CCCGGG 1 cut(s) 473
CseI GACGC 1 cut(s) 106
CviJI RGCY 8 cut(s) 104, 138, 221, 229, 241, 334, 472, 478
CviKI_1 RGCY 8 cut(s) 104, 138, 221, 229, 241, 334, 472, 478
DpnI GATC 4 cut(s) 351, 357, 419, 464
DpnII GATC 4 cut(s) 349, 355, 417, 462
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EciI GGCGGA 2 cut(s) 307, 529
Eco130I CCWWGG 1 cut(s) 224
Eco31I GGTCTC 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 556
Eco88I CYCGRG 1 cut(s) 473
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaiI YATR 1 cut(s) 429
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FauI CCCGC 1 cut(s) 250
FbaI TGATCA 1 cut(s) 462
Fnu4HI GCNGC 9 cut(s) 167, 214, 219, 230, 233, 236, 239, 548, 551
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 9 cut(s) 167, 214, 219, 230, 233, 236, 239, 548, 551
FspBI CTAG 2 cut(s) 225, 565
GlaI GCGC 1 cut(s) 217
GluI GCNGC 9 cut(s) 167, 214, 219, 230, 233, 236, 239, 548, 551
GsuI CTGGAG 1 cut(s) 523
HaeIII GGCC 4 cut(s) 138, 221, 241, 478
HapII CCGG 6 cut(s) 114, 134, 163, 271, 328, 474
HgaI GACGC 1 cut(s) 106
HhaI GCGC 1 cut(s) 218
Hin1I GRCGYC 1 cut(s) 117
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HinfI GANTC 2 cut(s) 265, 383
HpaII CCGG 6 cut(s) 114, 134, 163, 271, 328, 474
HphI GGTGA 2 cut(s) 260, 457
Hpy188I TCNGA 2 cut(s) 42, 186
Hpy188III TCNNGA 7 cut(s) 77, 262, 328, 347, 353, 415, 437
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 3 cut(s) 285, 460, 521
HpyCH4V TGCA 2 cut(s) 208, 553
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 235, 238
Hsp92I GRCGYC 1 cut(s) 117
HspAI GCGC 1 cut(s) 216
Kpn2I TCCGGA 1 cut(s) 327
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 462
Kzo9I GATC 4 cut(s) 349, 355, 417, 462
LmnI GCTCC 1 cut(s) 339
Lsp1109I GCAGC 3 cut(s) 178, 216, 537
LweI GCATC 1 cut(s) 178
MaeI CTAG 2 cut(s) 225, 565
MaeIII GTNAC 1 cut(s) 485
MalI GATC 4 cut(s) 351, 357, 419, 464
MboI GATC 4 cut(s) 349, 355, 417, 462
MboII GAAGA 4 cut(s) 62, 98, 413, 416
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 3 cut(s) 6, 317, 560
MlyI GAGTC 2 cut(s) 259, 377
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 7 cut(s) 84, 115, 185, 192, 422, 544, 547
MreI CGCCGGCG 1 cut(s) 113
MroI TCCGGA 1 cut(s) 327
MroNI GCCGGC 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 550
MspI CCGG 6 cut(s) 114, 134, 163, 271, 328, 474
MspR9I CCNGG 3 cut(s) 135, 474, 475
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 3 cut(s) 110, 235, 238
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 3 cut(s) 135, 474, 475
NdeII GATC 4 cut(s) 349, 355, 417, 462
NgoMIV GCCGGC 1 cut(s) 113
NlaIV GGNNCC 2 cut(s) 222, 424
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PdiI GCCGGC 1 cut(s) 115
PkrI GCNGC 9 cut(s) 168, 215, 220, 231, 234, 237, 240, 549, 552
PleI GAGTC 2 cut(s) 259, 377
PpsI GAGTC 2 cut(s) 259, 377
PspN4I GGNNCC 2 cut(s) 222, 424
PspPI GGNCC 5 cut(s) 136, 220, 240, 476, 556
PstI CTGCAG 1 cut(s) 555
RseI CAYNNNNRTG 1 cut(s) 438
SatI GCNGC 9 cut(s) 167, 214, 219, 230, 233, 236, 239, 548, 551
Sau3AI GATC 4 cut(s) 349, 355, 417, 462
Sau96I GGNCC 5 cut(s) 136, 220, 240, 476, 556
SchI GAGTC 2 cut(s) 259, 377
ScrFI CCNGG 3 cut(s) 135, 474, 475
SduI GDGCHC 1 cut(s) 308
SetI ASST 4 cut(s) 206, 336, 414, 558
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 551
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 1 cut(s) 556
SmaI CCCGGG 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SrfI GCCCGGGC 1 cut(s) 475
Sse9I AATT 3 cut(s) 6, 317, 560
SsiI CCGC 9 cut(s) 213, 218, 232, 235, 238, 243, 292, 540, 548
SspMI CTAG 2 cut(s) 225, 565
StyD4I CCNGG 3 cut(s) 133, 472, 473
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 3 cut(s) 285, 460, 521
TaqI TCGA 4 cut(s) 381, 393, 436, 497
TasI AATT 3 cut(s) 6, 317, 560
TauI GCSGC 6 cut(s) 216, 221, 235, 238, 241, 550
TseI GCWGC 3 cut(s) 166, 229, 550
TspGWI ACGGA 2 cut(s) 108, 184
TspMI CCCGGG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 1 cut(s) 6
XmaI CCCGGG 1 cut(s) 473
XmaJI CCTAGG 1 cut(s) 224
XspI CTAG 2 cut(s) 225, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.