Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001341

Physical Location & Seq

Genomic Coordinates Reverse (-)

14682569 .. 14683442

Gene Structure 874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022902

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCAACTCTGTCTCAACCATCGTTGTTTCAGGAGAAGGAAAATCTTGATCTCAATGGTAATCTTTCATTTCCTTCTTCTTTTCATGTTTCAAATTGTTCTTCTCACCCTAATTTTGCCAGAGCACTGAGTTTCAATTCCAACTCCAGAAAGCTCCACTTGGTTCTTGATCTTGATCACACACTCCTCCACACCACTCAACTCTGTAATCTGACACCTGAAGAAGACTATCTCAAGATCGGAACCCATCCTCATCGAGATGTTTTCGTGCTTGAAACTGTGATCACCAAGCTCAGGCCCTTTGTCAGGAGATTCTTGAATGAAGCCAGCAAGATGTTTGAGCTGTATATATACACAAAGGGTAACCGGTACTATGCGGGTCTAATGGCTGCCCTGCTTGATCCTAGGAAGGAGTATTTCACTTCCAGTTCTAAAGTCATATCGTGCGAGGATCACGGAATCTTGGGGAGATATAAGAGTCTGGATGCTGTGGTTGGCTGCAATTATTCTAATGTTTTGATCCTTGATGATACAGAAGAGGCATGGACAAAGGAAAGCCGGGACAATCTAATCGTTGTCGAGAAGTATTGTTTCTTTAGGCACAAAATGGGCCTAGCTAAATGCAAGTCTTATGCTGAGTTAAAGACTGATGAATGTGGATATCTTGCAGCACTTCTTGAAGTCCTTAAGTTTGTAATGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

235

Amino Acids

26.8

Weight (kDa)

6.75

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	53 - 210	1.3e-24	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001341)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10330
rosa_chinensis	RchiOBHm_Chr2g0124471 RchiOBHm_Chr2g0128771 RchiOBHm_Chr3g0488911 RchiOBHm_Chr7g0210561 RchiOBHm_Chr7g0211191 RchiOBHm_Chr7g0211371 RchiOBHm_Chr7g0211471 RchiOBHm_Chr7g0211491
rosa_laevigata	RLG00000003001 RLG00000018803 RLG00000022902
rosa_multiflora	Rmu_co8429473.1_g000001 Rmu_sc0001208.1_g000002 Rmu_sc0001303.1_g000009 Rmu_sc0002283.1_g000067 Rmu_sc0005514.1_g000010 Rmu_sc0007204.1_g000013 Rmu_sc0018619.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018290 Rroxscaffold_2G00115300 Rroxscaffold_2G00115330 Rroxscaffold_2G00118520 Rroxscaffold_2G00118830 Rroxscaffold_2G00119890 Rroxscaffold_3G00247870 Rroxscaffold_7G00186360 Rroxscaffold_7G00207860
rosa_rugosa	Rorug02G0280300 Rorug02G0280400 Rorug07G0125400
rosa_samantha	Rh2AG309500 Rh2AG309600 Rh2BG318300 Rh2BG341600 Rh2CG296400 Rh2CG301400 Rh2DG333500 Rh2DG358300 Rh3AG290600 Rh3DG323500 Rh7AG256900 Rh7AG257900 Rh7BG252000 Rh7CG273400 Rh7CG274500 Rh7CG274600 Rh7DG263300 Rh7DG263400 Rh7DG263900 Rh7DG265100 Rh7DG272000
rosa_wichuraiana	Rw2G025010 Rw7G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	3 cut(s)	395, 459, 514
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	294, 306
AflII	CTTAAG	1 cut(s)	686
AgeI	ACCGGT	1 cut(s)	366
AgsI	TTSAA	5 cut(s)	93, 136, 275, 319, 680
AluBI	AGCT	4 cut(s)	154, 292, 343, 617
AluI	AGCT	4 cut(s)	154, 292, 343, 617
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	3 cut(s)	395, 459, 514
AoxI	GGCC	2 cut(s)	296, 610
ApeKI	GCWGC	3 cut(s)	389, 498, 668
AsiGI	ACCGGT	1 cut(s)	366
AspA2I	CCTAGG	1 cut(s)	404
AspS9I	GGNCC	2 cut(s)	297, 610
AsuC2I	CCSGG	1 cut(s)	560
AsuHPI	GGTGA	2 cut(s)	98, 277
AvrII	CCTAGG	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	3 cut(s)	376, 485, 680
BccI	CCATC	2 cut(s)	28, 255
BclI	TGATCA	2 cut(s)	175, 282
BcnI	CCSGG	1 cut(s)	560
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	405, 614
BfrI	CTTAAG	1 cut(s)	686
BisI	GCNGC	3 cut(s)	390, 499, 669
BlnI	CCTAGG	1 cut(s)	404
BlsI	GCNGC	3 cut(s)	391, 500, 670
Bme1390I	CCNGG	1 cut(s)	560
BmgT120I	GGNCC	2 cut(s)	297, 610
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	560
BmsI	GCATC	1 cut(s)	475
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	560
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	404
BsaWI	WCCGGW	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 306
Bse118I	RCCGGY	1 cut(s)	366
Bse1I	ACTGG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	2 cut(s)	247, 490
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	294, 306
BseMII	CTCAG	3 cut(s)	119, 307, 627
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	3 cut(s)	376, 485, 680
BshFI	GGCC	2 cut(s)	298, 612
BshTI	ACCGGT	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	367, 559
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	2 cut(s)	294, 306
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	2 cut(s)	298, 612
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	2 cut(s)	298, 612
BspCNI	CTCAG	3 cut(s)	120, 306, 628
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	3 cut(s)	395, 459, 514
BspTI	CTTAAG	1 cut(s)	686
BsrFI	RCCGGY	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	426
BssAI	RCCGGY	1 cut(s)	366
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
BssT1I	CCWWGG	1 cut(s)	404
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	531
BstAFI	CTTAAG	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	3 cut(s)	128, 293, 636
BstEII	GGTNACC	1 cut(s)	362
BstENI	CCTNNNNNAGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	247, 490
BstKTI	GATC	8 cut(s)	52, 172, 178, 240, 285, 403, 454, 522
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
BstPI	GGTNACC	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	558
BstV1I	GCAGC	3 cut(s)	376, 485, 680
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	298, 612
BtsCI	GGATG	2 cut(s)	247, 490
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	297, 610
Csp6I	GTAC	1 cut(s)	370
CspAI	ACCGGT	1 cut(s)	366
CviAII	CATG	2 cut(s)	86, 543
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	3 cut(s)	128, 293, 636
DpnI	GATC	8 cut(s)	51, 171, 177, 239, 284, 402, 453, 521
DpnII	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	662
Eco57I	CTGAAG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	362
EcoNI	CCTNNNNNAGG	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	297
EcoO65I	GGTNACC	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	2 cut(s)	89, 546
FaiI	YATR	9 cut(s)	87, 348, 350, 352, 375, 440, 474, 544, 633
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	2 cut(s)	85, 542
FauI	CCCGC	1 cut(s)	370
FbaI	TGATCA	2 cut(s)	175, 282
Fnu4HI	GCNGC	3 cut(s)	390, 499, 669
FokI	GGATG	2 cut(s)	234, 497
Fsp4HI	GCNGC	3 cut(s)	390, 499, 669
FspBI	CTAG	2 cut(s)	405, 614
GluI	GCNGC	3 cut(s)	390, 499, 669
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	298, 612
HapII	CCGG	2 cut(s)	367, 559
Hin1II	CATG	2 cut(s)	89, 546
HinfI	GANTC	3 cut(s)	312, 459, 478
HpaII	CCGG	2 cut(s)	367, 559
HphI	GGTGA	2 cut(s)	98, 277
Hpy188I	TCNGA	2 cut(s)	213, 242
HpyAV	CCTTC	3 cut(s)	31, 84, 403
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	3 cut(s)	501, 624, 668
HpyF3I	CTNAG	3 cut(s)	128, 293, 636
Hsp92II	CATG	2 cut(s)	89, 546
Ksp22I	TGATCA	2 cut(s)	175, 282
Kzo9I	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
LmnI	GCTCC	1 cut(s)	159
Lsp1109I	GCAGC	3 cut(s)	376, 485, 680
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	2 cut(s)	405, 614
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	8 cut(s)	51, 171, 177, 239, 284, 402, 453, 521
MboI	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
MboII	GAAGA	5 cut(s)	69, 93, 233, 236, 548
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	4 cut(s)	94, 112, 136, 502
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	4 cut(s)	197, 261, 442, 532
MseI	TTAA	2 cut(s)	641, 687
MslI	CAYNNNNRTG	1 cut(s)	258
MspCI	CTTAAG	1 cut(s)	686
MspI	CCGG	2 cut(s)	367, 559
MspR9I	CCNGG	1 cut(s)	560
NciI	CCSGG	1 cut(s)	560
NdeII	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
NlaIII	CATG	2 cut(s)	89, 546
NlaIV	GGNNCC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	312, 459
PinAI	ACCGGT	1 cut(s)	366
PkrI	GCNGC	3 cut(s)	391, 500, 670
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
PspEI	GGTNACC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	297, 610
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	641, 687
SatI	GCNGC	3 cut(s)	390, 499, 669
Sau3AI	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
Sau96I	GGNCC	2 cut(s)	297, 610
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	5 cut(s)	156, 220, 294, 345, 619
SfaNI	GCATC	1 cut(s)	475
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	233, 686
SmoI	CTYRAG	2 cut(s)	233, 686
Sse9I	AATT	4 cut(s)	94, 112, 136, 502
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	2 cut(s)	405, 614
StyD4I	CCNGG	1 cut(s)	558
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	2 cut(s)	256, 579
TasI	AATT	4 cut(s)	94, 112, 136, 502
TfiI	GAWTC	2 cut(s)	312, 459
Tru1I	TTAA	2 cut(s)	641, 687
Tru9I	TTAA	2 cut(s)	641, 687
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	3 cut(s)	389, 498, 668
TspDTI	ATGAA	4 cut(s)	57, 74, 336, 666
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	132
Vha464I	CTTAAG	1 cut(s)	686
XagI	CCTNNNNNAGG	1 cut(s)	304
XmaJI	CCTAGG	1 cut(s)	404
XspI	CTAG	2 cut(s)	405, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.