Rroxscaffold_7G00186360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001341
Physical Location & Seq
Forward (+)
25705714 .. 25726080
20367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186360.1

Sequence Viewer

Length: 735 bp
ATGAATAATTTAGGGTTGGCTTTGGAGCCTTCCCTAGTAGTGTCGATTATTGGTTACTCGGGGCTTATTCTTAGGGTGAAGTCCCAAGGTACCACGTCTAGTGGATTATTTTTCGGGAAATTTGTGGAAAAACTTATCTTCATAAATCCCACGAGGGAAACATCTTCACAGCAACACAAGACAGTCACATATTCCCGGGAGGGTAGGACACCGGGGTCTGCTCAAGTTATCCGATGGAAGGCAAACAAGAATAATATGGTGGACATTGGGCTTTCCCCAACGAGGAAGCTCCACTTGGTTCTTGATCCGGATCACACACACTTCTCCACATCATTCGACTCTATAATCGACACCGAAGAAGACTACCTCAAGATCGGAACCCGTACTCATCAAGATGTTTTCGTGCTTGAAACCGTGATCACCAAGCCCGGGCCAGCGAAGCTCGGTGATCGATTAGAAGGCGTGCGCGGCGAGCTCTCCCGAAACCATGGAAGCACCATCAAGATCGACTTCGAACTCTTCATTAACGAGTTCAGCAGCAAGAAGAGGCTTGACATTGAGTCCCGGTTCGTCCAGAAGAGCAGCCCGCTAAGAGCAAGTTCACCCGTCAGTCATCGGGTCGATTATTATTCACTACTTTTTAGTGTTTATTTCCACCCTCCGAGTCACGGCACAGTTTCCAAACTGACTCGGGTCACCGGATGTAAATCCAAGGGCAGAGAGAATTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

27.42

Weight (kDa)

9.6

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 214
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 89
AccII CGCG 1 cut(s) 468
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 2 cut(s) 468, 587
AclWI GGATC 2 cut(s) 299, 318
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 2 cut(s) 91, 385
AfiI CCNNNNNNNGG 4 cut(s) 238, 282, 429, 668
AgsI TTSAA 1 cut(s) 410
AhdI GACNNNNNGTC 1 cut(s) 559
AjiI CACGTC 1 cut(s) 96
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 3 cut(s) 289, 442, 475
AluI AGCT 3 cut(s) 289, 442, 475
Alw21I GWGCWC 1 cut(s) 477
AlwI GGATC 2 cut(s) 299, 318
Ama87I CYCGRG 4 cut(s) 58, 195, 428, 690
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 1 cut(s) 431
ApeKI GCWGC 2 cut(s) 537, 582
ApoI RAATTY 1 cut(s) 119
Asp718I GGTACC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 6 cut(s) 196, 197, 213, 429, 430, 565
AsuHPI GGTGA 5 cut(s) 88, 412, 458, 594, 688
AsuII TTCGAA 1 cut(s) 513
AvaI CYCGRG 4 cut(s) 58, 195, 428, 690
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 477
BauI CACGAG 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 2 cut(s) 549, 594
BccI CCATC 2 cut(s) 228, 506
BceAI ACGGC 1 cut(s) 685
BclI TGATCA 1 cut(s) 417
BcnI CCSGG 6 cut(s) 196, 197, 213, 429, 430, 565
BfaI CTAG 2 cut(s) 35, 99
BisI GCNGC 3 cut(s) 469, 538, 583
BlsI GCNGC 3 cut(s) 470, 539, 584
Bme1390I CCNGG 6 cut(s) 196, 197, 213, 429, 430, 565
BmeRI GACNNNNNGTC 1 cut(s) 559
BmeT110I CYCGRG 4 cut(s) 58, 195, 428, 690
BmgBI CACGTC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 3 cut(s) 27, 91, 379
BmrFI CCNGG 6 cut(s) 196, 197, 213, 429, 430, 565
BoxI GACNNNNGTC 1 cut(s) 692
BpiI GAAGAC 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 513
BpuEI CTTGAG 2 cut(s) 207, 353
BpuMI CCSGG 6 cut(s) 196, 197, 213, 429, 430, 565
Bsa29I ATCGAT 1 cut(s) 451
BsaBI GATNNNNATC 2 cut(s) 309, 706
BsaJI CCNNGG 6 cut(s) 85, 195, 212, 428, 487, 711
BsaWI WCCGGW 2 cut(s) 307, 698
Bsc4I CCNNNNNNNGG 4 cut(s) 238, 282, 429, 668
Bse8I GATNNNNATC 2 cut(s) 309, 706
BseAI TCCGGA 1 cut(s) 307
BseCI ATCGAT 1 cut(s) 451
BseDI CCNNGG 6 cut(s) 85, 195, 212, 428, 487, 711
BseGI GGATG 1 cut(s) 707
BseJI GATNNNNATC 2 cut(s) 309, 706
BseLI CCNNNNNNNGG 4 cut(s) 238, 282, 429, 668
BseXI GCAGC 2 cut(s) 549, 594
Bsh1236I CGCG 1 cut(s) 468
BshFI GGCC 1 cut(s) 433
BshNI GGYRCC 1 cut(s) 89
BshVI ATCGAT 1 cut(s) 451
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 4 cut(s) 58, 195, 428, 690
BsiSI CCGG 6 cut(s) 196, 212, 308, 429, 565, 699
BslFI GGGAC 2 cut(s) 67, 547
BslI CCNNNNNNNGG 4 cut(s) 238, 282, 429, 668
BsmFI GGGAC 2 cut(s) 67, 547
BsnI GGCC 1 cut(s) 433
BsoBI CYCGRG 4 cut(s) 58, 195, 428, 690
Bsp119I TTCGAA 1 cut(s) 513
Bsp1286I GDGCHC 1 cut(s) 477
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 6 cut(s) 304, 310, 372, 417, 448, 504
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 2 cut(s) 468, 587
BspANI GGCC 1 cut(s) 433
BspDI ATCGAT 1 cut(s) 451
BspEI TCCGGA 1 cut(s) 307
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 3 cut(s) 27, 91, 379
BspPI GGATC 2 cut(s) 299, 318
BspQI GCTCTTC 1 cut(s) 572
BspT104I TTCGAA 1 cut(s) 513
BspT107I GGYRCC 1 cut(s) 89
BssECI CCNNGG 6 cut(s) 85, 195, 212, 428, 487, 711
BssMI GATC 6 cut(s) 304, 310, 372, 417, 448, 504
BssSI CACGAG 1 cut(s) 151
BssT1I CCWWGG 3 cut(s) 85, 487, 711
Bst2BI CACGAG 1 cut(s) 151
Bst4CI ACNGT 3 cut(s) 184, 415, 676
Bst6I CTCTTC 3 cut(s) 524, 539, 572
BstBI TTCGAA 1 cut(s) 513
BstC8I GCNNGC 4 cut(s) 435, 464, 473, 587
BstDEI CTNAG 2 cut(s) 71, 590
BstDSI CCRYGG 1 cut(s) 487
BstEII GGTNACC 1 cut(s) 694
BstF5I GGATG 1 cut(s) 707
BstFNI CGCG 1 cut(s) 468
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 6 cut(s) 307, 313, 375, 420, 451, 507
BstMBI GATC 6 cut(s) 304, 310, 372, 417, 448, 504
BstMWI GCNNNNNNNGC 3 cut(s) 439, 468, 472
BstPAI GACNNNNGTC 1 cut(s) 692
BstPI GGTNACC 1 cut(s) 694
BstSCI CCNGG 6 cut(s) 194, 195, 211, 427, 428, 563
BstUI CGCG 1 cut(s) 468
BstV1I GCAGC 2 cut(s) 549, 594
BstV2I GAAGAC 1 cut(s) 366
Bsu15I ATCGAT 1 cut(s) 451
BsuRI GGCC 1 cut(s) 433
BsuTUI ATCGAT 1 cut(s) 451
BtgI CCRYGG 1 cut(s) 487
BtrI CACGTC 1 cut(s) 96
BtsCI GGATG 1 cut(s) 707
Cac8I GCNNGC 4 cut(s) 435, 464, 473, 587
CfoI GCGC 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 431
Cfr9I CCCGGG 2 cut(s) 195, 428
ClaI ATCGAT 1 cut(s) 451
Csp6I GTAC 2 cut(s) 90, 384
CviAII CATG 1 cut(s) 488
CviQI GTAC 2 cut(s) 90, 384
DdeI CTNAG 2 cut(s) 71, 590
DpnI GATC 6 cut(s) 306, 312, 374, 419, 450, 506
DpnII GATC 6 cut(s) 304, 310, 372, 417, 448, 504
DrdI GACNNNNNNGTC 1 cut(s) 214
DriI GACNNNNNGTC 1 cut(s) 559
DseDI GACNNNNNNGTC 1 cut(s) 214
Eam1104I CTCTTC 3 cut(s) 524, 539, 572
Eam1105I GACNNNNNGTC 1 cut(s) 559
EarI CTCTTC 3 cut(s) 524, 539, 572
Ecl136II GAGCTC 1 cut(s) 475
Eco130I CCWWGG 3 cut(s) 85, 487, 711
Eco24I GRGCYC 1 cut(s) 477
Eco53kI GAGCTC 1 cut(s) 475
Eco88I CYCGRG 4 cut(s) 58, 195, 428, 690
Eco91I GGTNACC 1 cut(s) 694
EcoICRI GAGCTC 1 cut(s) 475
EcoO65I GGTNACC 1 cut(s) 694
EcoT14I CCWWGG 3 cut(s) 85, 487, 711
EcoT38I GRGCYC 1 cut(s) 477
ErhI CCWWGG 3 cut(s) 85, 487, 711
FaeI CATG 1 cut(s) 491
FaiI YATR 5 cut(s) 143, 190, 257, 344, 489
FalI AAGNNNNNCTT 4 cut(s) 278, 310, 494, 526
FaqI GGGAC 2 cut(s) 67, 547
FatI CATG 1 cut(s) 487
FauI CCCGC 1 cut(s) 594
FbaI TGATCA 1 cut(s) 417
Fnu4HI GCNGC 3 cut(s) 469, 538, 583
FokI GGATG 1 cut(s) 714
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 3 cut(s) 469, 538, 583
FspBI CTAG 2 cut(s) 35, 99
GlaI GCGC 1 cut(s) 467
GluI GCNGC 3 cut(s) 469, 538, 583
HaeIII GGCC 1 cut(s) 433
HapII CCGG 6 cut(s) 196, 212, 308, 429, 565, 699
HhaI GCGC 1 cut(s) 468
Hin1II CATG 1 cut(s) 491
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HinfI GANTC 4 cut(s) 338, 560, 664, 688
HpaII CCGG 6 cut(s) 196, 212, 308, 429, 565, 699
HphI GGTGA 5 cut(s) 88, 412, 458, 594, 688
Hpy166II GTNNAC 2 cut(s) 262, 602
Hpy188I TCNGA 3 cut(s) 233, 377, 663
Hpy188III TCNNGA 8 cut(s) 115, 302, 308, 370, 392, 480, 502, 574
Hpy8I GTNNAC 2 cut(s) 262, 602
HpyAV CCTTC 3 cut(s) 39, 232, 452
HpyCH4III ACNGT 3 cut(s) 184, 415, 676
HpyCH4IV ACGT 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 3 cut(s) 439, 468, 472
HpyF3I CTNAG 2 cut(s) 71, 590
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 1 cut(s) 491
HspAI GCGC 1 cut(s) 466
Kpn2I TCCGGA 1 cut(s) 307
KpnI GGTACC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 6 cut(s) 304, 310, 372, 417, 448, 504
LguI GCTCTTC 1 cut(s) 572
LmnI GCTCC 2 cut(s) 25, 294
LpnPI CCDG 8 cut(s) 209, 225, 321, 442, 447, 578, 587, 712
Lsp1109I GCAGC 2 cut(s) 549, 594
MaeI CTAG 2 cut(s) 35, 99
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 4 cut(s) 53, 184, 665, 694
MalI GATC 6 cut(s) 306, 312, 374, 419, 450, 506
MboI GATC 6 cut(s) 304, 310, 372, 417, 448, 504
MboII GAAGA 7 cut(s) 130, 156, 368, 371, 511, 556, 589
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 3 cut(s) 7, 119, 724
MlyI GAGTC 4 cut(s) 332, 569, 673, 682
MnlI CCTC 6 cut(s) 147, 193, 276, 377, 540, 669
MroI TCCGGA 1 cut(s) 307
MseI TTAA 2 cut(s) 525, 733
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 6 cut(s) 196, 212, 308, 429, 565, 699
MspR9I CCNGG 6 cut(s) 196, 197, 213, 429, 430, 565
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 3 cut(s) 439, 468, 472
NciI CCSGG 6 cut(s) 196, 197, 213, 429, 430, 565
NcoI CCATGG 1 cut(s) 487
NdeII GATC 6 cut(s) 304, 310, 372, 417, 448, 504
NlaIII CATG 1 cut(s) 491
NlaIV GGNNCC 3 cut(s) 27, 91, 379
NmuCI GTSAC 3 cut(s) 184, 665, 694
NspV TTCGAA 1 cut(s) 513
PciSI GCTCTTC 1 cut(s) 572
PkrI GCNGC 3 cut(s) 470, 539, 584
PleI GAGTC 4 cut(s) 332, 568, 672, 682
PpsI GAGTC 4 cut(s) 332, 568, 672, 682
PshAI GACNNNNGTC 1 cut(s) 692
Psp124BI GAGCTC 1 cut(s) 477
PspEI GGTNACC 1 cut(s) 694
PspN4I GGNNCC 3 cut(s) 27, 91, 379
PspPI GGNCC 1 cut(s) 431
RsaI GTAC 2 cut(s) 91, 385
RsaNI GTAC 2 cut(s) 90, 384
RseI CAYNNNNRTG 1 cut(s) 393
SacI GAGCTC 1 cut(s) 477
SapI GCTCTTC 1 cut(s) 572
SaqAI TTAA 2 cut(s) 525, 733
SatI GCNGC 3 cut(s) 469, 538, 583
Sau3AI GATC 6 cut(s) 304, 310, 372, 417, 448, 504
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 4 cut(s) 332, 569, 673, 682
ScrFI CCNGG 6 cut(s) 196, 197, 213, 429, 430, 565
SduI GDGCHC 1 cut(s) 477
SetI ASST 6 cut(s) 91, 98, 291, 369, 444, 477
SfuI TTCGAA 1 cut(s) 513
SmaI CCCGGG 2 cut(s) 197, 430
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 2 cut(s) 222, 368
SmoI CTYRAG 2 cut(s) 222, 368
SrfI GCCCGGGC 1 cut(s) 430
Sse9I AATT 3 cut(s) 7, 119, 724
SsiI CCGC 2 cut(s) 468, 587
SspMI CTAG 2 cut(s) 35, 99
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 6 cut(s) 194, 195, 211, 427, 428, 563
StyI CCWWGG 3 cut(s) 85, 487, 711
TaaI ACNGT 3 cut(s) 184, 415, 676
TaiI ACGT 1 cut(s) 98
TaqI TCGA 7 cut(s) 44, 336, 348, 451, 507, 513, 621
TasI AATT 3 cut(s) 7, 119, 724
TauI GCSGC 1 cut(s) 471
Tru1I TTAA 2 cut(s) 525, 733
Tru9I TTAA 2 cut(s) 525, 733
TseFI GTSAC 3 cut(s) 184, 665, 694
TseI GCWGC 2 cut(s) 537, 582
Tsp45I GTSAC 3 cut(s) 184, 665, 694
TspDTI ATGAA 3 cut(s) 17, 130, 511
TspMI CCCGGG 2 cut(s) 195, 428
XapI RAATTY 1 cut(s) 119
XmaI CCCGGG 2 cut(s) 195, 428
XspI CTAG 2 cut(s) 35, 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.