Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8429473.1

Orthogroup ID

OG0001341

Physical Location & Seq

Genomic Coordinates Reverse (-)

1039 .. 1437

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8429473.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atggctgccctgcttgatcctaggaaggagtatttcacttccgtttctagagtcatatcgtgcgaggatcacggaatcttggggagatataagagcctggatgctgtggttggctgcaattattctaatgttttgatccttgatgacacagaagaggcatggacaaaggaaagccgggacaatctaatcgttgtcgagaagtattgtttctttaggcacaaaatgggcctagttaaatgcaagtcttatgctgagttaaagactgatgaatgtggatatctggcagcacttcttgaagttcttaaggtaatcaaccgtatcttctgtgatgaactagccagaaatccttctggtgtggatgtgagggatgtgttagaactgtttcgaaacaattgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

132

Amino Acids

15.09

Weight (kDa)

5.43

Isoelectric Point (pI)

31.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001341)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10330
rosa_chinensis	RchiOBHm_Chr2g0124471 RchiOBHm_Chr2g0128771 RchiOBHm_Chr3g0488911 RchiOBHm_Chr7g0210561 RchiOBHm_Chr7g0211191 RchiOBHm_Chr7g0211371 RchiOBHm_Chr7g0211471 RchiOBHm_Chr7g0211491
rosa_laevigata	RLG00000003001 RLG00000018803 RLG00000022902
rosa_multiflora	Rmu_co8429473.1_g000001 Rmu_sc0001208.1_g000002 Rmu_sc0001303.1_g000009 Rmu_sc0002283.1_g000067 Rmu_sc0005514.1_g000010 Rmu_sc0007204.1_g000013 Rmu_sc0018619.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018290 Rroxscaffold_2G00115300 Rroxscaffold_2G00115330 Rroxscaffold_2G00118520 Rroxscaffold_2G00118830 Rroxscaffold_2G00119890 Rroxscaffold_3G00247870 Rroxscaffold_7G00186360 Rroxscaffold_7G00207860
rosa_rugosa	Rorug02G0280300 Rorug02G0280400 Rorug07G0125400
rosa_samantha	Rh2AG309500 Rh2AG309600 Rh2BG318300 Rh2BG341600 Rh2CG296400 Rh2CG301400 Rh2DG333500 Rh2DG358300 Rh3AG290600 Rh3DG323500 Rh7AG256900 Rh7AG257900 Rh7BG252000 Rh7CG273400 Rh7CG274500 Rh7CG274600 Rh7DG263300 Rh7DG263400 Rh7DG263900 Rh7DG265100 Rh7DG272000
rosa_wichuraiana	Rw2G025010 Rw7G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	11, 75, 130
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	96
AlwI	GGATC	3 cut(s)	11, 75, 130
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	5, 114, 284
Asp700I	GAANNNNTTC	2 cut(s)	346, 381
AspA2I	CCTAGG	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	226
AsuC2I	CCSGG	1 cut(s)	176
AsuII	TTCGAA	1 cut(s)	385
AvrII	CCTAGG	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	101, 296
BciT130I	CCWGG	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	176
BfaI	CTAG	4 cut(s)	21, 48, 230, 335
BfrI	CTTAAG	1 cut(s)	302
BisI	GCNGC	3 cut(s)	6, 115, 285
BlnI	CCTAGG	1 cut(s)	20
BlsI	GCNGC	3 cut(s)	7, 116, 286
Bme1390I	CCNGG	2 cut(s)	98, 176
BmgT120I	GGNCC	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	98, 176
BmsI	GCATC	1 cut(s)	91
Bpu14I	TTCGAA	1 cut(s)	385
BpuMI	CCSGG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	3 cut(s)	106, 364, 373
BseMII	CTCAG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	101, 296
BshFI	GGCC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	228
Bsp119I	TTCGAA	1 cut(s)	385
Bsp143I	GATC	3 cut(s)	16, 67, 135
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	244
BspPI	GGATC	3 cut(s)	11, 75, 130
BspT104I	TTCGAA	1 cut(s)	385
BspTI	CTTAAG	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	3 cut(s)	16, 67, 135
BssT1I	CCWWGG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	317, 381
Bst6I	CTCTTC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	302
BstBI	TTCGAA	1 cut(s)	385
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	106, 364, 373
BstKTI	GATC	3 cut(s)	19, 70, 138
BstMBI	GATC	3 cut(s)	16, 67, 135
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	2 cut(s)	96, 174
BstV1I	GCAGC	2 cut(s)	101, 296
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	3 cut(s)	106, 364, 373
Cfr13I	GGNCC	1 cut(s)	226
CviAII	CATG	1 cut(s)	159
CviJI	RGCY	6 cut(s)	5, 96, 114, 174, 228, 338
CviKI_1	RGCY	6 cut(s)	5, 96, 114, 174, 228, 338
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	18, 69, 137
DpnII	GATC	3 cut(s)	16, 67, 135
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	96
EcoRV	GATATC	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	1 cut(s)	162
FaiI	YATR	4 cut(s)	56, 90, 160, 249
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	158
Fnu4HI	GCNGC	3 cut(s)	6, 115, 285
FokI	GGATG	3 cut(s)	113, 371, 380
Fsp4HI	GCNGC	3 cut(s)	6, 115, 285
FspBI	CTAG	4 cut(s)	21, 48, 230, 335
GluI	GCNGC	3 cut(s)	6, 115, 285
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	175
Hin1II	CATG	1 cut(s)	162
HinfI	GANTC	2 cut(s)	51, 75
HpaII	CCGG	1 cut(s)	175
Hpy188III	TCNNGA	3 cut(s)	48, 196, 293
HpyAV	CCTTC	2 cut(s)	19, 357
HpyCH4III	ACNGT	2 cut(s)	317, 381
HpyCH4V	TGCA	2 cut(s)	117, 240
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	16, 67, 135
LpnPI	CCDG	7 cut(s)	23, 83, 110, 188, 266, 336, 352
Lsp1109I	GCAGC	2 cut(s)	101, 296
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	4 cut(s)	21, 48, 230, 335
MalI	GATC	3 cut(s)	18, 69, 137
MboI	GATC	3 cut(s)	16, 67, 135
MboII	GAAGA	2 cut(s)	164, 313
MfeI	CAATTG	1 cut(s)	391
MluCI	AATT	2 cut(s)	118, 391
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	3 cut(s)	58, 148, 357
MroXI	GAANNNNTTC	2 cut(s)	346, 381
MseI	TTAA	4 cut(s)	234, 257, 303, 397
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	2 cut(s)	98, 176
MunI	CAATTG	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	98
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	3 cut(s)	16, 67, 135
NlaIII	CATG	1 cut(s)	162
NspV	TTCGAA	1 cut(s)	385
PdmI	GAANNNNTTC	2 cut(s)	346, 381
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	7, 116, 286
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	226
SaqAI	TTAA	4 cut(s)	234, 257, 303, 397
SatI	GCNGC	3 cut(s)	6, 115, 285
Sau3AI	GATC	3 cut(s)	16, 67, 135
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	98, 176
SetI	ASST	1 cut(s)	309
SfaNI	GCATC	1 cut(s)	91
SfuI	TTCGAA	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	118, 391
SspMI	CTAG	4 cut(s)	21, 48, 230, 335
StyD4I	CCNGG	2 cut(s)	96, 174
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	317, 381
TaqI	TCGA	2 cut(s)	195, 385
TasI	AATT	2 cut(s)	118, 391
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	4 cut(s)	234, 257, 303, 397
Tru9I	TTAA	4 cut(s)	234, 257, 303, 397
TseI	GCWGC	3 cut(s)	5, 114, 284
TspDTI	ATGAA	2 cut(s)	282, 345
TspGWI	ACGGA	2 cut(s)	31, 87
Vha464I	CTTAAG	1 cut(s)	302
XbaI	TCTAGA	1 cut(s)	47
XmaJI	CCTAGG	1 cut(s)	20
XmnI	GAANNNNTTC	2 cut(s)	346, 381
XspI	CTAG	4 cut(s)	21, 48, 230, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.