Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001341

Physical Location & Seq

Genomic Coordinates Reverse (-)

28456351 .. 28457249

Gene Structure 899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18894

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCAAAACCAACGTTGTTTCAGGAAAATCTGGATGTCAATGCACTGAGTTTCAATTCCAACTCCAGAAAGCTCCACTTGGTTCTTGATCTGGATCACACACTCCTCCACACCACTCAACTCTGTAATCTGACACCTGAAGAAGACTATCTCAAGATCGGAACCCATCCTCATCGAGATGTGTTCGTGCTTGAAACTGTGATCACCAAGCTCAGGCCCTTTGTCTGGAGATTCTTGGATGAAGCCAGCAAGATGTTTGAGCTGTATATATACACAAAGGGTAACCGGTACTATGCGGGTCTAATGGCTGCCCTGCTTGATCCTAGGAAGGAGTATTTCCCTTCCAGTTCTAGAGTAATATCCTGCGAGGATCACGGAATCGTGGGGAGATATAAGAGTCTGGATGCTGTGGTTGGCTGCAATTATTCTAATGTTTTGATTCTTGATGATACAGAAGCGGCATGGACAAAGGAAAGCCGGGACAATCTAATCCTTGTCGAGAAGTATTGTTTCTTTAGGCACAAAATGGGCCTACCTAAATGCAAGTCTTATGCTGAGTTAAAGACTGATGAATGTGGATATCTTGCAGCACTTCTTGAAGTGCTGAACGTAATCAACCGTATCTTCTGTGATGAACTAGCCATAAATCCTTCTGGTGTAGATGTGAGGGATGTGTTACAACTGTTTGGAAACAATTCGTCAAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

236

Amino Acids

26.99

Weight (kDa)

5.98

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	26 - 174	2.4e-23	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001341)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10330
rosa_chinensis	RchiOBHm_Chr2g0124471 RchiOBHm_Chr2g0128771 RchiOBHm_Chr3g0488911 RchiOBHm_Chr7g0210561 RchiOBHm_Chr7g0211191 RchiOBHm_Chr7g0211371 RchiOBHm_Chr7g0211471 RchiOBHm_Chr7g0211491
rosa_laevigata	RLG00000003001 RLG00000018803 RLG00000022902
rosa_multiflora	Rmu_co8429473.1_g000001 Rmu_sc0001208.1_g000002 Rmu_sc0001303.1_g000009 Rmu_sc0002283.1_g000067 Rmu_sc0005514.1_g000010 Rmu_sc0007204.1_g000013 Rmu_sc0018619.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018290 Rroxscaffold_2G00115300 Rroxscaffold_2G00115330 Rroxscaffold_2G00118520 Rroxscaffold_2G00118830 Rroxscaffold_2G00119890 Rroxscaffold_3G00247870 Rroxscaffold_7G00186360 Rroxscaffold_7G00207860
rosa_rugosa	Rorug02G0280300 Rorug02G0280400 Rorug07G0125400
rosa_samantha	Rh2AG309500 Rh2AG309600 Rh2BG318300 Rh2BG341600 Rh2CG296400 Rh2CG301400 Rh2DG333500 Rh2DG358300 Rh3AG290600 Rh3DG323500 Rh7AG256900 Rh7AG257900 Rh7BG252000 Rh7CG273400 Rh7CG274500 Rh7CG274600 Rh7DG263300 Rh7DG263400 Rh7DG263900 Rh7DG265100 Rh7DG272000
rosa_wichuraiana	Rw2G025010 Rw7G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	296, 458
AclI	AACGTT	1 cut(s)	14
AclWI	GGATC	3 cut(s)	102, 314, 378
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	213, 225
AgeI	ACCGGT	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	55, 194, 599
AluBI	AGCT	3 cut(s)	73, 211, 262
AluI	AGCT	3 cut(s)	73, 211, 262
AlwI	GGATC	3 cut(s)	102, 314, 378
AoxI	GGCC	2 cut(s)	215, 529
ApeKI	GCWGC	3 cut(s)	308, 417, 587
AsiGI	ACCGGT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	694
AspA2I	CCTAGG	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	216, 529
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	196
AvrII	CCTAGG	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	295, 404, 599
BccI	CCATC	1 cut(s)	174
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	479
BfaI	CTAG	3 cut(s)	324, 351, 638
BisI	GCNGC	4 cut(s)	309, 418, 459, 588
BlnI	CCTAGG	1 cut(s)	323
BlsI	GCNGC	4 cut(s)	310, 419, 460, 589
Bme1390I	CCNGG	1 cut(s)	479
BmgT120I	GGNCC	2 cut(s)	216, 529
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	2 cut(s)	49, 247
Bpu10I	CCTNAGC	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 225
Bse118I	RCCGGY	1 cut(s)	285
Bse1I	ACTGG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	5 cut(s)	40, 166, 244, 409, 676
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	213, 225
BseMII	CTCAG	3 cut(s)	38, 226, 546
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	295, 404, 599
BshFI	GGCC	2 cut(s)	217, 531
BshTI	ACCGGT	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	286, 478
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	2 cut(s)	213, 225
BsmFI	GGGAC	1 cut(s)	494
BsnI	GGCC	2 cut(s)	217, 531
Bsp143I	GATC	6 cut(s)	88, 94, 156, 201, 319, 370
BspACI	CCGC	2 cut(s)	296, 458
BspANI	GGCC	2 cut(s)	217, 531
BspCNI	CTCAG	3 cut(s)	39, 225, 547
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	3 cut(s)	102, 314, 378
BsrFI	RCCGGY	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	345
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	6 cut(s)	88, 94, 156, 201, 319, 370
BssT1I	CCWWGG	1 cut(s)	323
Bst4CI	ACNGT	3 cut(s)	199, 620, 684
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	3 cut(s)	47, 212, 555
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	5 cut(s)	40, 166, 244, 409, 676
BstKTI	GATC	6 cut(s)	91, 97, 159, 204, 322, 373
BstMBI	GATC	6 cut(s)	88, 94, 156, 201, 319, 370
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	295, 404, 599
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	217, 531
BtsCI	GGATG	5 cut(s)	40, 166, 244, 409, 676
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	285
Cfr13I	GGNCC	2 cut(s)	216, 529
Csp6I	GTAC	1 cut(s)	289
CspAI	ACCGGT	1 cut(s)	285
CviAII	CATG	1 cut(s)	462
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	3 cut(s)	47, 212, 555
DpnI	GATC	6 cut(s)	90, 96, 158, 203, 321, 372
DpnII	GATC	6 cut(s)	88, 94, 156, 201, 319, 370
Eco130I	CCWWGG	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	159
Eco91I	GGTNACC	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	216
EcoO65I	GGTNACC	1 cut(s)	281
EcoRV	GATATC	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	1 cut(s)	465
FaiI	YATR	8 cut(s)	267, 269, 271, 294, 393, 463, 552, 644
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	1 cut(s)	461
FauI	CCCGC	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	4 cut(s)	309, 418, 459, 588
FokI	GGATG	5 cut(s)	47, 153, 251, 416, 683
Fsp4HI	GCNGC	4 cut(s)	309, 418, 459, 588
FspBI	CTAG	3 cut(s)	324, 351, 638
GluI	GCNGC	4 cut(s)	309, 418, 459, 588
GsuI	CTGGAG	2 cut(s)	49, 247
HaeIII	GGCC	2 cut(s)	217, 531
HapII	CCGG	2 cut(s)	286, 478
Hin1II	CATG	1 cut(s)	465
HinfI	GANTC	4 cut(s)	231, 378, 397, 439
HpaII	CCGG	2 cut(s)	286, 478
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	132, 161
HpyAV	CCTTC	3 cut(s)	322, 351, 660
HpyCH4III	ACNGT	3 cut(s)	199, 620, 684
HpyCH4IV	ACGT	2 cut(s)	14, 609
HpyCH4V	TGCA	4 cut(s)	44, 420, 543, 587
HpyF3I	CTNAG	3 cut(s)	47, 212, 555
HpySE526I	ACGT	2 cut(s)	14, 609
Hsp92II	CATG	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	6 cut(s)	88, 94, 156, 201, 319, 370
LmnI	GCTCC	1 cut(s)	78
Lsp1109I	GCAGC	3 cut(s)	295, 404, 599
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	3 cut(s)	324, 351, 638
MaeII	ACGT	2 cut(s)	14, 609
MaeIII	GTNAC	2 cut(s)	281, 675
MalI	GATC	6 cut(s)	90, 96, 158, 203, 321, 372
MboI	GATC	6 cut(s)	88, 94, 156, 201, 319, 370
MboII	GAAGA	3 cut(s)	152, 155, 616
MluCI	AATT	3 cut(s)	55, 421, 694
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	5 cut(s)	116, 180, 361, 660, 698
MroXI	GAANNNNTTC	1 cut(s)	694
MseI	TTAA	1 cut(s)	560
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	2 cut(s)	286, 478
MspR9I	CCNGG	1 cut(s)	479
NciI	CCSGG	1 cut(s)	479
NdeII	GATC	6 cut(s)	88, 94, 156, 201, 319, 370
NlaIII	CATG	1 cut(s)	465
NlaIV	GGNNCC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	694
PfeI	GAWTC	3 cut(s)	231, 378, 439
PinAI	ACCGGT	1 cut(s)	285
PkrI	GCNGC	4 cut(s)	310, 419, 460, 589
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
Psp1406I	AACGTT	1 cut(s)	14
PspEI	GGTNACC	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	216, 529
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	4 cut(s)	309, 418, 459, 588
Sau3AI	GATC	6 cut(s)	88, 94, 156, 201, 319, 370
Sau96I	GGNCC	2 cut(s)	216, 529
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	479
SetI	ASST	8 cut(s)	17, 75, 139, 213, 264, 538, 612, 709
SfaNI	GCATC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	55, 421, 694
SsiI	CCGC	2 cut(s)	296, 458
SspMI	CTAG	3 cut(s)	324, 351, 638
StyD4I	CCNGG	1 cut(s)	477
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	3 cut(s)	199, 620, 684
TaiI	ACGT	2 cut(s)	17, 612
TaqI	TCGA	2 cut(s)	175, 498
TasI	AATT	3 cut(s)	55, 421, 694
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	3 cut(s)	231, 378, 439
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	3 cut(s)	308, 417, 587
TspDTI	ATGAA	3 cut(s)	255, 585, 648
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	1 cut(s)	51
XbaI	TCTAGA	1 cut(s)	350
XmaJI	CCTAGG	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	694
XspI	CTAG	3 cut(s)	324, 351, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.