Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007204.1

Orthogroup ID

OG0001341

Physical Location & Seq

Genomic Coordinates Forward (+)

51808 .. 52554

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007204.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggcaactctttcggcagatctcaatggtaatgtttcatttccttcttcttttcaggtttcaaattgttcttctaaccctaattttgccagagcactgagtttcaattccaactccagaaagctccacttggttcttgatctggatcacacacccctccacactactaaactctgtaaactgacacctgaagaagactatctcaagatcggaacccatcctcatagagatgttttcgtgcttgaaactatgatcaccaagctcaggcccattgtctggagattcttggatgaagctagcaagatgtttgagctgtacatatacacaaatggtaaccggtactatgcgggtctaatggctgccctgcttgatcctaggaaggagcacaaaatgggcctagctaagtctcatgctgagttaaagactgatgaatgtggatatcttgcagcacttcttgaagtgcttaaggtaatcaaccgtgtcttctgtgatgtactagacagaaatccttctggtgtagatgtgagggatgtgttacaactgtttggaaacaattgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

186

Amino Acids

21.03

Weight (kDa)

7.04

Isoelectric Point (pI)

20.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001341)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10330
rosa_chinensis	RchiOBHm_Chr2g0124471 RchiOBHm_Chr2g0128771 RchiOBHm_Chr3g0488911 RchiOBHm_Chr7g0210561 RchiOBHm_Chr7g0211191 RchiOBHm_Chr7g0211371 RchiOBHm_Chr7g0211471 RchiOBHm_Chr7g0211491
rosa_laevigata	RLG00000003001 RLG00000018803 RLG00000022902
rosa_multiflora	Rmu_co8429473.1_g000001 Rmu_sc0001208.1_g000002 Rmu_sc0001303.1_g000009 Rmu_sc0002283.1_g000067 Rmu_sc0005514.1_g000010 Rmu_sc0007204.1_g000013 Rmu_sc0018619.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018290 Rroxscaffold_2G00115300 Rroxscaffold_2G00115330 Rroxscaffold_2G00118520 Rroxscaffold_2G00118830 Rroxscaffold_2G00119890 Rroxscaffold_3G00247870 Rroxscaffold_7G00186360 Rroxscaffold_7G00207860
rosa_rugosa	Rorug02G0280300 Rorug02G0280400 Rorug07G0125400
rosa_samantha	Rh2AG309500 Rh2AG309600 Rh2BG318300 Rh2BG341600 Rh2CG296400 Rh2CG301400 Rh2DG333500 Rh2DG358300 Rh3AG290600 Rh3DG323500 Rh7AG256900 Rh7AG257900 Rh7BG252000 Rh7CG273400 Rh7CG274500 Rh7CG274600 Rh7DG263300 Rh7DG263400 Rh7DG263900 Rh7DG265100 Rh7DG272000
rosa_wichuraiana	Rw2G025010 Rw7G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	276
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	2 cut(s)	153, 365
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	3 cut(s)	317, 341, 495
AfiI	CCNNNNNNNGG	2 cut(s)	264, 276
AflII	CTTAAG	1 cut(s)	464
AgeI	ACCGGT	1 cut(s)	336
AgsI	TTSAA	4 cut(s)	63, 106, 245, 458
AluBI	AGCT	5 cut(s)	124, 262, 296, 313, 401
AluI	AGCT	5 cut(s)	124, 262, 296, 313, 401
Alw21I	GWGCWC	2 cut(s)	97, 387
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	2 cut(s)	153, 365
AoxI	GGCC	2 cut(s)	266, 394
ApeKI	GCWGC	2 cut(s)	359, 446
AsiGI	ACCGGT	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	508
AspA2I	CCTAGG	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	267, 394
AsuHPI	GGTGA	1 cut(s)	247
AsuNHI	GCTAGC	1 cut(s)	296
AvrII	CCTAGG	1 cut(s)	374
BbsI	GAAGAC	2 cut(s)	201, 475
Bbv12I	GWGCWC	2 cut(s)	97, 387
BbvI	GCAGC	2 cut(s)	346, 458
BccI	CCATC	1 cut(s)	225
BcgI	CGANNNNNNTGC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	4 cut(s)	297, 375, 398, 497
BfrI	CTTAAG	1 cut(s)	464
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	2 cut(s)	360, 447
BlnI	CCTAGG	1 cut(s)	374
BlsI	GCNGC	2 cut(s)	361, 448
BmgT120I	GGNCC	2 cut(s)	267, 394
BmiI	GGNNCC	1 cut(s)	214
BmtI	GCTAGC	1 cut(s)	300
BpiI	GAAGAC	2 cut(s)	201, 475
BpmI	CTGGAG	2 cut(s)	100, 298
Bpu10I	CCTNAGC	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	374
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 276
Bse118I	RCCGGY	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	3 cut(s)	217, 295, 535
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	264, 276
BseMII	CTCAG	3 cut(s)	89, 277, 405
BseXI	GCAGC	2 cut(s)	346, 458
BshFI	GGCC	2 cut(s)	268, 396
BshTI	ACCGGT	1 cut(s)	336
BsiHKAI	GWGCWC	2 cut(s)	97, 387
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	2 cut(s)	264, 276
BsmAI	GTCTC	1 cut(s)	411
BsnI	GGCC	2 cut(s)	268, 396
Bsp1286I	GDGCHC	2 cut(s)	97, 387
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	6 cut(s)	19, 139, 145, 207, 252, 370
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	2 cut(s)	268, 396
BspCNI	CTCAG	3 cut(s)	90, 276, 406
BspLI	GGNNCC	1 cut(s)	214
BspOI	GCTAGC	1 cut(s)	300
BspPI	GGATC	2 cut(s)	153, 365
BspTI	CTTAAG	1 cut(s)	464
BsrFI	RCCGGY	1 cut(s)	336
BsrGI	TGTACA	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	6 cut(s)	19, 139, 145, 207, 252, 370
BssT1I	CCWWGG	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	479, 543
BstAFI	CTTAAG	1 cut(s)	464
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	4 cut(s)	98, 263, 402, 414
BstEII	GGTNACC	1 cut(s)	332
BstF5I	GGATG	3 cut(s)	217, 295, 535
BstKTI	GATC	6 cut(s)	22, 142, 148, 210, 255, 373
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	6 cut(s)	19, 139, 145, 207, 252, 370
BstPI	GGTNACC	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	346, 458
BstV2I	GAAGAC	2 cut(s)	201, 475
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	268, 396
BtsCI	GGATG	3 cut(s)	217, 295, 535
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	267, 394
Csp6I	GTAC	3 cut(s)	316, 340, 494
CspAI	ACCGGT	1 cut(s)	336
CviAII	CATG	1 cut(s)	410
CviJI	RGCY	8 cut(s)	124, 262, 268, 296, 313, 359, 396, 401
CviKI_1	RGCY	8 cut(s)	124, 262, 268, 296, 313, 359, 396, 401
CviQI	GTAC	3 cut(s)	316, 340, 494
DdeI	CTNAG	4 cut(s)	98, 263, 402, 414
DpnI	GATC	6 cut(s)	21, 141, 147, 209, 254, 372
DpnII	GATC	6 cut(s)	19, 139, 145, 207, 252, 370
Eco130I	CCWWGG	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	210
Eco91I	GGTNACC	1 cut(s)	332
EcoO65I	GGTNACC	1 cut(s)	332
EcoRV	GATATC	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	1 cut(s)	413
FaiI	YATR	6 cut(s)	225, 251, 320, 322, 345, 411
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	1 cut(s)	409
FauI	CCCGC	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	360, 447
FokI	GGATG	3 cut(s)	204, 302, 542
Fsp4HI	GCNGC	2 cut(s)	360, 447
FspBI	CTAG	4 cut(s)	297, 375, 398, 497
GluI	GCNGC	2 cut(s)	360, 447
GsuI	CTGGAG	2 cut(s)	100, 298
HaeIII	GGCC	2 cut(s)	268, 396
HapII	CCGG	1 cut(s)	337
Hin1II	CATG	1 cut(s)	413
HinfI	GANTC	1 cut(s)	282
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	6 cut(s)	117, 137, 143, 205, 277, 455
Hpy8I	GTNNAC	1 cut(s)	179
HpyAV	CCTTC	3 cut(s)	54, 373, 519
HpyCH4III	ACNGT	2 cut(s)	479, 543
HpyCH4V	TGCA	1 cut(s)	446
HpyF3I	CTNAG	4 cut(s)	98, 263, 402, 414
Hsp92II	CATG	1 cut(s)	413
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	6 cut(s)	19, 139, 145, 207, 252, 370
LmnI	GCTCC	2 cut(s)	129, 382
Lsp1109I	GCAGC	2 cut(s)	346, 458
MaeI	CTAG	4 cut(s)	297, 375, 398, 497
MaeIII	GTNAC	2 cut(s)	332, 534
MalI	GATC	6 cut(s)	21, 141, 147, 209, 254, 372
MboI	GATC	6 cut(s)	19, 139, 145, 207, 252, 370
MboII	GAAGA	5 cut(s)	39, 63, 203, 206, 475
MfeI	CAATTG	1 cut(s)	553
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	97, 387
MluCI	AATT	4 cut(s)	64, 82, 106, 553
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	3 cut(s)	167, 231, 519
MroXI	GAANNNNTTC	1 cut(s)	508
MseI	TTAA	2 cut(s)	419, 465
MslI	CAYNNNNRTG	1 cut(s)	228
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	1 cut(s)	337
MunI	CAATTG	1 cut(s)	553
NdeII	GATC	6 cut(s)	19, 139, 145, 207, 252, 370
NheI	GCTAGC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	282
PflMI	CCANNNNNTGG	1 cut(s)	276
PinAI	ACCGGT	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	361, 448
PspEI	GGTNACC	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	267, 394
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	3 cut(s)	317, 341, 495
RsaNI	GTAC	3 cut(s)	316, 340, 494
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	419, 465
SatI	GCNGC	2 cut(s)	360, 447
Sau3AI	GATC	6 cut(s)	19, 139, 145, 207, 252, 370
Sau96I	GGNCC	2 cut(s)	267, 394
SduI	GDGCHC	2 cut(s)	97, 387
SetI	ASST	8 cut(s)	60, 126, 190, 264, 298, 315, 403, 471
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	203, 464
SmoI	CTYRAG	2 cut(s)	203, 464
Sse9I	AATT	4 cut(s)	64, 82, 106, 553
SsiI	CCGC	1 cut(s)	347
SspMI	CTAG	4 cut(s)	297, 375, 398, 497
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	2 cut(s)	479, 543
TasI	AATT	4 cut(s)	64, 82, 106, 553
TatI	WGTACW	2 cut(s)	315, 493
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	2 cut(s)	419, 465
Tru9I	TTAA	2 cut(s)	419, 465
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	2 cut(s)	359, 446
TspDTI	ATGAA	3 cut(s)	27, 306, 444
TspRI	CASTG	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	276
Vha464I	CTTAAG	1 cut(s)	464
XmaJI	CCTAGG	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	508
XspI	CTAG	4 cut(s)	297, 375, 398, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.