Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001341

Physical Location & Seq

Genomic Coordinates Forward (+)

28627797 .. 28629560

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18921

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTCAATGCTCCACTTGGTTCTTGATCTGGATCACACACTCCTCCACACCACTCAACTCTGTAATCTGACACCTGAAGAAGACTATCTCAAGATCGGAACCCATCCTCATCGAGATGTTTTCGTGCTTGAAACTGTGATCACCAAGCTCAGGCCCTTTGTCTGGAGATTCTTGGATGAAGCCAGCAAGATGTTTGAGCTGTACATATACACAAAGGGTAACCGGTACTATGCGGGTCTAATGGCTGCCCTGCTTGATCCTAGGAAGGAGTATTTCCCTTCCAGTTCTAGAGTCATATCCTGCGAGGATCACGGAATCGTGAGGATATATAAGAGTCTGGATGCTGTGGTTGGCTGCAATTATTCTAATGTTTTGATTCTTGATGATACAGAAGCGGCATGGACAAAGGAAAGCCGGGACAATCTAATCGTTGTCGAGAAGTATTGTTTCTTTAGGCACAAAATGGGCCTACCTAAATGCAAGTCTCATGCTGAGTTAAAGACTGATGAATGTGGATATCTTGCAGCACTTCTTGAAGTGCTTAAGGTAATCAACCGTATCTTCTGTGATGAACTAGCCATAAATCCTTCTGGTGTAGATGTGAGGGATGTGTTACAACTGTTTGGAAACAATTCGTCAAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

215

Amino Acids

24.67

Weight (kDa)

6.06

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	5 - 150	1.7e-23	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001341)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10330
rosa_chinensis	RchiOBHm_Chr2g0124471 RchiOBHm_Chr2g0128771 RchiOBHm_Chr3g0488911 RchiOBHm_Chr7g0210561 RchiOBHm_Chr7g0211191 RchiOBHm_Chr7g0211371 RchiOBHm_Chr7g0211471 RchiOBHm_Chr7g0211491
rosa_laevigata	RLG00000003001 RLG00000018803 RLG00000022902
rosa_multiflora	Rmu_co8429473.1_g000001 Rmu_sc0001208.1_g000002 Rmu_sc0001303.1_g000009 Rmu_sc0002283.1_g000067 Rmu_sc0005514.1_g000010 Rmu_sc0007204.1_g000013 Rmu_sc0018619.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018290 Rroxscaffold_2G00115300 Rroxscaffold_2G00115330 Rroxscaffold_2G00118520 Rroxscaffold_2G00118830 Rroxscaffold_2G00119890 Rroxscaffold_3G00247870 Rroxscaffold_7G00186360 Rroxscaffold_7G00207860
rosa_rugosa	Rorug02G0280300 Rorug02G0280400 Rorug07G0125400
rosa_samantha	Rh2AG309500 Rh2AG309600 Rh2BG318300 Rh2BG341600 Rh2CG296400 Rh2CG301400 Rh2DG333500 Rh2DG358300 Rh3AG290600 Rh3DG323500 Rh7AG256900 Rh7AG257900 Rh7BG252000 Rh7CG273400 Rh7CG274500 Rh7CG274600 Rh7DG263300 Rh7DG263400 Rh7DG263900 Rh7DG265100 Rh7DG272000
rosa_wichuraiana	Rw2G025010 Rw7G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	233, 395
AclWI	GGATC	3 cut(s)	39, 251, 315
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	2 cut(s)	203, 227
AfiI	CCNNNNNNNGG	2 cut(s)	150, 162
AflII	CTTAAG	1 cut(s)	542
AgeI	ACCGGT	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	131, 536
AluBI	AGCT	2 cut(s)	148, 199
AluI	AGCT	2 cut(s)	148, 199
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	3 cut(s)	39, 251, 315
AoxI	GGCC	2 cut(s)	152, 466
ApeKI	GCWGC	3 cut(s)	245, 354, 524
AsiGI	ACCGGT	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	631
AspA2I	CCTAGG	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	153, 466
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	133
AvrII	CCTAGG	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	232, 341, 536
BccI	CCATC	1 cut(s)	111
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	3 cut(s)	261, 288, 575
BfrI	CTTAAG	1 cut(s)	542
BisI	GCNGC	4 cut(s)	246, 355, 396, 525
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	4 cut(s)	247, 356, 397, 526
Bme1390I	CCNGG	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	153, 466
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	416
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 162
Bse118I	RCCGGY	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	4 cut(s)	103, 181, 346, 613
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	150, 162
BseMII	CTCAG	2 cut(s)	163, 483
BseNI	ACTGG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	3 cut(s)	232, 341, 536
BshFI	GGCC	2 cut(s)	154, 468
BshTI	ACCGGT	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	223, 415
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	2 cut(s)	150, 162
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	2 cut(s)	154, 468
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	6 cut(s)	25, 31, 93, 138, 256, 307
BspACI	CCGC	2 cut(s)	233, 395
BspANI	GGCC	2 cut(s)	154, 468
BspCNI	CTCAG	2 cut(s)	162, 484
BspLI	GGNNCC	1 cut(s)	100
BspPI	GGATC	3 cut(s)	39, 251, 315
BspTI	CTTAAG	1 cut(s)	542
BsrFI	RCCGGY	1 cut(s)	222
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	6 cut(s)	25, 31, 93, 138, 256, 307
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	136, 557, 621
BstAFI	CTTAAG	1 cut(s)	542
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	2 cut(s)	149, 492
BstEII	GGTNACC	1 cut(s)	218
BstF5I	GGATG	4 cut(s)	103, 181, 346, 613
BstKTI	GATC	6 cut(s)	28, 34, 96, 141, 259, 310
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	6 cut(s)	25, 31, 93, 138, 256, 307
BstPI	GGTNACC	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	232, 341, 536
BstV2I	GAAGAC	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	154, 468
BtsCI	GGATG	4 cut(s)	103, 181, 346, 613
Cac8I	GCNNGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	153, 466
Csp6I	GTAC	2 cut(s)	202, 226
CspAI	ACCGGT	1 cut(s)	222
CviAII	CATG	2 cut(s)	399, 488
CviJI	RGCY	9 cut(s)	148, 154, 182, 199, 245, 354, 414, 468, 578
CviKI_1	RGCY	9 cut(s)	148, 154, 182, 199, 245, 354, 414, 468, 578
CviQI	GTAC	2 cut(s)	202, 226
DdeI	CTNAG	2 cut(s)	149, 492
DpnI	GATC	6 cut(s)	27, 33, 95, 140, 258, 309
DpnII	GATC	6 cut(s)	25, 31, 93, 138, 256, 307
Eco130I	CCWWGG	1 cut(s)	260
Eco32I	GATATC	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	96
Eco91I	GGTNACC	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	153
EcoO65I	GGTNACC	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	2 cut(s)	402, 491
FaiI	YATR	9 cut(s)	206, 208, 231, 296, 328, 330, 400, 489, 581
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	2 cut(s)	398, 487
FauI	CCCGC	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	246, 355, 396, 525
FokI	GGATG	4 cut(s)	90, 188, 353, 620
Fsp4HI	GCNGC	4 cut(s)	246, 355, 396, 525
FspBI	CTAG	3 cut(s)	261, 288, 575
GluI	GCNGC	4 cut(s)	246, 355, 396, 525
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	154, 468
HapII	CCGG	2 cut(s)	223, 415
Hin1II	CATG	2 cut(s)	402, 491
HinfI	GANTC	5 cut(s)	168, 291, 315, 334, 376
HpaII	CCGG	2 cut(s)	223, 415
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	69, 98
HpyAV	CCTTC	3 cut(s)	259, 288, 597
HpyCH4III	ACNGT	3 cut(s)	136, 557, 621
HpyCH4V	TGCA	3 cut(s)	357, 480, 524
HpyF3I	CTNAG	2 cut(s)	149, 492
Hsp92II	CATG	2 cut(s)	402, 491
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	6 cut(s)	25, 31, 93, 138, 256, 307
LmnI	GCTCC	1 cut(s)	15
Lsp1109I	GCAGC	3 cut(s)	232, 341, 536
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	3 cut(s)	261, 288, 575
MaeIII	GTNAC	2 cut(s)	218, 612
MalI	GATC	6 cut(s)	27, 33, 95, 140, 258, 309
MboI	GATC	6 cut(s)	25, 31, 93, 138, 256, 307
MboII	GAAGA	3 cut(s)	89, 92, 553
MluCI	AATT	2 cut(s)	358, 631
MlyI	GAGTC	2 cut(s)	300, 343
MnlI	CCTC	6 cut(s)	53, 117, 298, 315, 597, 635
MroXI	GAANNNNTTC	1 cut(s)	631
MseI	TTAA	2 cut(s)	497, 543
MslI	CAYNNNNRTG	1 cut(s)	114
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	2 cut(s)	223, 415
MspR9I	CCNGG	1 cut(s)	416
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	6 cut(s)	25, 31, 93, 138, 256, 307
NlaIII	CATG	2 cut(s)	402, 491
NlaIV	GGNNCC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	631
PfeI	GAWTC	3 cut(s)	168, 315, 376
PinAI	ACCGGT	1 cut(s)	222
PkrI	GCNGC	4 cut(s)	247, 356, 397, 526
PleI	GAGTC	2 cut(s)	299, 342
PpsI	GAGTC	2 cut(s)	299, 342
PspEI	GGTNACC	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	2 cut(s)	153, 466
RsaI	GTAC	2 cut(s)	203, 227
RsaNI	GTAC	2 cut(s)	202, 226
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	497, 543
SatI	GCNGC	4 cut(s)	246, 355, 396, 525
Sau3AI	GATC	6 cut(s)	25, 31, 93, 138, 256, 307
Sau96I	GGNCC	2 cut(s)	153, 466
SchI	GAGTC	2 cut(s)	300, 343
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	6 cut(s)	76, 150, 201, 475, 549, 646
SfaNI	GCATC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	89, 542
SmoI	CTYRAG	2 cut(s)	89, 542
Sse9I	AATT	2 cut(s)	358, 631
SsiI	CCGC	2 cut(s)	233, 395
SspMI	CTAG	3 cut(s)	261, 288, 575
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	3 cut(s)	136, 557, 621
TaqI	TCGA	2 cut(s)	112, 435
TasI	AATT	2 cut(s)	358, 631
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	3 cut(s)	168, 315, 376
Tru1I	TTAA	2 cut(s)	497, 543
Tru9I	TTAA	2 cut(s)	497, 543
TseI	GCWGC	3 cut(s)	245, 354, 524
TspDTI	ATGAA	3 cut(s)	192, 522, 585
TspGWI	ACGGA	1 cut(s)	327
Vha464I	CTTAAG	1 cut(s)	542
XbaI	TCTAGA	1 cut(s)	287
XmaJI	CCTAGG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	631
XspI	CTAG	3 cut(s)	261, 288, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.