Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001341

Physical Location & Seq

Genomic Coordinates Reverse (-)

28030058 .. 28030938

Gene Structure 881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG263400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTTGCTTCAGGAGAAGGAAAATCTTGATCTCAATGGTAATCTTTCATTTCCTTCTTCATTTCATGTTTCAAATTGTTCTTCTCACCCTAATTTTGCTAGGGCACTGAGTTTCAGTTCCAACTCCAGAAAGCTCCACTTGGTTCTTGATCTTGATCACACACTCCTCCACACCACTCAACTCTGTAATCTGACACCTGAAGAAGACTATCTCAAGATCGGAACCCATCCTCATCGAGATGTTTTCGTGCTTGAAACTGTGATCAGCAAGCTCAGGCCCTTTGTCTGGAGATTCTTAGATGAAGCCAGCAAGATGTTTGAGCTGTATATATACACAAAGGGTAACCGGTACTATGCGGGTCTAATGGCTGCCCTGCTTGATCCTAGGAAGCAGTATTTCACTTCCAATTCTAGAGTCATATCGTGCGAGGATCACGGAATCATGGGGCGATATAAGAGTCTGGATGCTGTGGTTGGCTGCAATTATTCTAATGTTTTGATCCTTGATGATACGGAAGAGGCATGGACAAAGGAAAGCCGGGACAATCTAATCGTTGTCGAGAAGTATTGTTTCTTTAGGCACAAAATGGGCCTACCTAAATGCAAGTCTTATGCTGAGTTAAAGACTGATGAATGTGGATATCTTGCAGCACTTCTTGAAGTGCTTAAGGTAATCAACCGTATCTTCTGTGATGAACTAGCCAGAAATCCTTTTGGTGTAGATGTGAGGGAGGTGTTACAACTGTTCGGAAATAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

253

Amino Acids

29.12

Weight (kDa)

6.31

Isoelectric Point (pI)

30.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	46 - 194	1.7e-23	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001341)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10330
rosa_chinensis	RchiOBHm_Chr2g0124471 RchiOBHm_Chr2g0128771 RchiOBHm_Chr3g0488911 RchiOBHm_Chr7g0210561 RchiOBHm_Chr7g0211191 RchiOBHm_Chr7g0211371 RchiOBHm_Chr7g0211471 RchiOBHm_Chr7g0211491
rosa_laevigata	RLG00000003001 RLG00000018803 RLG00000022902
rosa_multiflora	Rmu_co8429473.1_g000001 Rmu_sc0001208.1_g000002 Rmu_sc0001303.1_g000009 Rmu_sc0002283.1_g000067 Rmu_sc0005514.1_g000010 Rmu_sc0007204.1_g000013 Rmu_sc0018619.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018290 Rroxscaffold_2G00115300 Rroxscaffold_2G00115330 Rroxscaffold_2G00118520 Rroxscaffold_2G00118830 Rroxscaffold_2G00119890 Rroxscaffold_3G00247870 Rroxscaffold_7G00186360 Rroxscaffold_7G00207860
rosa_rugosa	Rorug02G0280300 Rorug02G0280400 Rorug07G0125400
rosa_samantha	Rh2AG309500 Rh2AG309600 Rh2BG318300 Rh2BG341600 Rh2CG296400 Rh2CG301400 Rh2DG333500 Rh2DG358300 Rh3AG290600 Rh3DG323500 Rh7AG256900 Rh7AG257900 Rh7BG252000 Rh7CG273400 Rh7CG274500 Rh7CG274600 Rh7DG263300 Rh7DG263400 Rh7DG263900 Rh7DG265100 Rh7DG272000
rosa_wichuraiana	Rw2G025010 Rw7G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	356
AclWI	GGATC	3 cut(s)	374, 438, 493
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflII	CTTAAG	1 cut(s)	665
AgeI	ACCGGT	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	72, 254, 659
AluBI	AGCT	3 cut(s)	133, 271, 322
AluI	AGCT	3 cut(s)	133, 271, 322
AlwI	GGATC	3 cut(s)	374, 438, 493
AoxI	GGCC	2 cut(s)	275, 589
ApeKI	GCWGC	3 cut(s)	368, 477, 647
AsiGI	ACCGGT	1 cut(s)	345
AspA2I	CCTAGG	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	276, 589
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	77
AvrII	CCTAGG	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	355, 464, 659
BccI	CCATC	1 cut(s)	234
BclI	TGATCA	2 cut(s)	154, 261
BcnI	CCSGG	1 cut(s)	539
BfaI	CTAG	4 cut(s)	99, 384, 411, 698
BfrI	CTTAAG	1 cut(s)	665
BisI	GCNGC	3 cut(s)	369, 478, 648
BlnI	CCTAGG	1 cut(s)	383
BlsI	GCNGC	3 cut(s)	370, 479, 649
Bme1390I	CCNGG	1 cut(s)	539
BmgT120I	GGNCC	2 cut(s)	276, 589
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	454
BpiI	GAAGAC	1 cut(s)	210
BpmI	CTGGAG	2 cut(s)	109, 307
Bpu10I	CCTNAGC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	383
BsaWI	WCCGGW	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	2 cut(s)	226, 469
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	3 cut(s)	98, 286, 606
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	355, 464, 659
BshFI	GGCC	2 cut(s)	277, 591
BshTI	ACCGGT	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	346, 538
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	277, 591
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	8 cut(s)	28, 148, 154, 216, 261, 379, 430, 498
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	2 cut(s)	277, 591
BspCNI	CTCAG	3 cut(s)	99, 285, 607
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	3 cut(s)	374, 438, 493
BspTI	CTTAAG	1 cut(s)	665
BsrFI	RCCGGY	1 cut(s)	345
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	8 cut(s)	28, 148, 154, 216, 261, 379, 430, 498
BssT1I	CCWWGG	1 cut(s)	383
Bst4CI	ACNGT	3 cut(s)	259, 680, 744
Bst6I	CTCTTC	1 cut(s)	510
BstAFI	CTTAAG	1 cut(s)	665
BstC8I	GCNNGC	2 cut(s)	269, 307
BstDEI	CTNAG	4 cut(s)	107, 272, 295, 615
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	226, 469
BstKTI	GATC	8 cut(s)	31, 151, 157, 219, 264, 382, 433, 501
BstMBI	GATC	8 cut(s)	28, 148, 154, 216, 261, 379, 430, 498
BstPI	GGTNACC	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	3 cut(s)	355, 464, 659
BstV2I	GAAGAC	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	277, 591
BtsCI	GGATG	2 cut(s)	226, 469
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	269, 307
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	276, 589
Csp6I	GTAC	1 cut(s)	349
CspAI	ACCGGT	1 cut(s)	345
CviAII	CATG	3 cut(s)	65, 442, 522
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	4 cut(s)	107, 272, 295, 615
DpnI	GATC	8 cut(s)	30, 150, 156, 218, 263, 381, 432, 500
DpnII	GATC	8 cut(s)	28, 148, 154, 216, 261, 379, 430, 498
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	383
Eco32I	GATATC	1 cut(s)	641
Eco57I	CTGAAG	1 cut(s)	219
Eco91I	GGTNACC	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	276
EcoO65I	GGTNACC	1 cut(s)	341
EcoRV	GATATC	1 cut(s)	641
EcoT14I	CCWWGG	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	3 cut(s)	68, 445, 525
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	3 cut(s)	64, 441, 521
FauI	CCCGC	1 cut(s)	349
FbaI	TGATCA	2 cut(s)	154, 261
Fnu4HI	GCNGC	3 cut(s)	369, 478, 648
FokI	GGATG	2 cut(s)	213, 476
Fsp4HI	GCNGC	3 cut(s)	369, 478, 648
FspBI	CTAG	4 cut(s)	99, 384, 411, 698
GluI	GCNGC	3 cut(s)	369, 478, 648
GsuI	CTGGAG	2 cut(s)	109, 307
HaeIII	GGCC	2 cut(s)	277, 591
HapII	CCGG	2 cut(s)	346, 538
Hin1II	CATG	3 cut(s)	68, 445, 525
HinfI	GANTC	4 cut(s)	291, 414, 438, 457
HpaII	CCGG	2 cut(s)	346, 538
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	3 cut(s)	192, 221, 749
HpyAV	CCTTC	2 cut(s)	10, 63
HpyCH4III	ACNGT	3 cut(s)	259, 680, 744
HpyCH4V	TGCA	3 cut(s)	480, 603, 647
HpyF3I	CTNAG	4 cut(s)	107, 272, 295, 615
Hsp92II	CATG	3 cut(s)	68, 445, 525
Ksp22I	TGATCA	2 cut(s)	154, 261
Kzo9I	GATC	8 cut(s)	28, 148, 154, 216, 261, 379, 430, 498
LmnI	GCTCC	1 cut(s)	138
Lsp1109I	GCAGC	3 cut(s)	355, 464, 659
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	4 cut(s)	99, 384, 411, 698
MaeIII	GTNAC	2 cut(s)	341, 735
MalI	GATC	8 cut(s)	30, 150, 156, 218, 263, 381, 432, 500
MboI	GATC	8 cut(s)	28, 148, 154, 216, 261, 379, 430, 498
MboII	GAAGA	6 cut(s)	48, 72, 212, 215, 527, 676
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	5 cut(s)	73, 91, 406, 481, 754
MlyI	GAGTC	2 cut(s)	423, 466
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	6 cut(s)	176, 240, 421, 511, 720, 724
MseI	TTAA	2 cut(s)	620, 666
MslI	CAYNNNNRTG	1 cut(s)	237
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	2 cut(s)	346, 538
MspR9I	CCNGG	1 cut(s)	539
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	8 cut(s)	28, 148, 154, 216, 261, 379, 430, 498
NlaIII	CATG	3 cut(s)	68, 445, 525
NlaIV	GGNNCC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	291, 438
PinAI	ACCGGT	1 cut(s)	345
PkrI	GCNGC	3 cut(s)	370, 479, 649
PleI	GAGTC	2 cut(s)	422, 465
PpsI	GAGTC	2 cut(s)	422, 465
PspEI	GGTNACC	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	276, 589
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	620, 666
SatI	GCNGC	3 cut(s)	369, 478, 648
Sau3AI	GATC	8 cut(s)	28, 148, 154, 216, 261, 379, 430, 498
Sau96I	GGNCC	2 cut(s)	276, 589
SchI	GAGTC	2 cut(s)	423, 466
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	7 cut(s)	135, 199, 273, 324, 598, 672, 735
SfaNI	GCATC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	2 cut(s)	212, 665
SmoI	CTYRAG	2 cut(s)	212, 665
Sse9I	AATT	5 cut(s)	73, 91, 406, 481, 754
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	4 cut(s)	99, 384, 411, 698
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	3 cut(s)	259, 680, 744
TaqI	TCGA	2 cut(s)	235, 558
TasI	AATT	5 cut(s)	73, 91, 406, 481, 754
TfiI	GAWTC	2 cut(s)	291, 438
Tru1I	TTAA	2 cut(s)	620, 666
Tru9I	TTAA	2 cut(s)	620, 666
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	3 cut(s)	368, 477, 647
TspDTI	ATGAA	6 cut(s)	36, 48, 53, 315, 645, 708
TspGWI	ACGGA	2 cut(s)	450, 527
TspRI	CASTG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	665
XbaI	TCTAGA	1 cut(s)	410
XmaJI	CCTAGG	1 cut(s)	383
XspI	CTAG	4 cut(s)	99, 384, 411, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.