Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001341

Physical Location & Seq

Genomic Coordinates Forward (+)

28617860 .. 28618363

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18919

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGATCACCAAGCTCAGGCCCTTTGTCTGGAGATTCTTGGATGAAGCCAGCAAGATGTTTGAGCTGTATATATACACAAAGGGTAACCGGTACTATGCGGGTCTAATGGCTGCCCTGCTTGATCCTAGGAAGGAGTATTTCACTTCCAGTTCTAGAGTCAAATCGTGCAAGGATCATGGAATCGTGGGGCGATATAAGAGTCTGGATGCTGTGGTTGGCTGCAATTATTCTAATGTTTTGATCCTTGATGATACGGAAGAGGCATGGACAAAGGAAAGCCAGGACAATCTAATCGTTGTCGAGAAGTATTGTTTCTTTAGGCACAAAATGGGCCTACCTAAATGCAAGTCTTATGCTGAGTTAAAGACTGATGAATGTGGATATCTTGCAGCACTTCTTGAAGTGCTTAAGGTAATCAACCGTATCTTCTGTGATGAACTAGCCATAAATCCTTCTGGTGTAGATGTGAGGGAGGTGTTACAACTGTTCGGAAACAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

167

Amino Acids

19.22

Weight (kDa)

7.52

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	3 - 109	1.1e-17	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001341)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10330
rosa_chinensis	RchiOBHm_Chr2g0124471 RchiOBHm_Chr2g0128771 RchiOBHm_Chr3g0488911 RchiOBHm_Chr7g0210561 RchiOBHm_Chr7g0211191 RchiOBHm_Chr7g0211371 RchiOBHm_Chr7g0211471 RchiOBHm_Chr7g0211491
rosa_laevigata	RLG00000003001 RLG00000018803 RLG00000022902
rosa_multiflora	Rmu_co8429473.1_g000001 Rmu_sc0001208.1_g000002 Rmu_sc0001303.1_g000009 Rmu_sc0002283.1_g000067 Rmu_sc0005514.1_g000010 Rmu_sc0007204.1_g000013 Rmu_sc0018619.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018290 Rroxscaffold_2G00115300 Rroxscaffold_2G00115330 Rroxscaffold_2G00118520 Rroxscaffold_2G00118830 Rroxscaffold_2G00119890 Rroxscaffold_3G00247870 Rroxscaffold_7G00186360 Rroxscaffold_7G00207860
rosa_rugosa	Rorug02G0280300 Rorug02G0280400 Rorug07G0125400
rosa_samantha	Rh2AG309500 Rh2AG309600 Rh2BG318300 Rh2BG341600 Rh2CG296400 Rh2CG301400 Rh2DG333500 Rh2DG358300 Rh3AG290600 Rh3DG323500 Rh7AG256900 Rh7AG257900 Rh7BG252000 Rh7CG273400 Rh7CG274500 Rh7CG274600 Rh7DG263300 Rh7DG263400 Rh7DG263900 Rh7DG265100 Rh7DG272000
rosa_wichuraiana	Rw2G025010 Rw7G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	3 cut(s)	116, 180, 235
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	15, 27
AflII	CTTAAG	1 cut(s)	407
AgeI	ACCGGT	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	2 cut(s)	13, 64
AluI	AGCT	2 cut(s)	13, 64
AlwI	GGATC	3 cut(s)	116, 180, 235
AoxI	GGCC	2 cut(s)	17, 331
ApeKI	GCWGC	3 cut(s)	110, 219, 389
AsiGI	ACCGGT	1 cut(s)	87
AspA2I	CCTAGG	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	18, 331
AvrII	CCTAGG	1 cut(s)	125
BbvI	GCAGC	3 cut(s)	97, 206, 401
BciT130I	CCWGG	1 cut(s)	281
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	3 cut(s)	126, 153, 440
BfrI	CTTAAG	1 cut(s)	407
BisI	GCNGC	3 cut(s)	111, 220, 390
BlnI	CCTAGG	1 cut(s)	125
BlsI	GCNGC	3 cut(s)	112, 221, 391
Bme1390I	CCNGG	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	18, 331
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	125
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 27
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	2 cut(s)	46, 211
BseLI	CCNNNNNNNGG	2 cut(s)	15, 27
BseMII	CTCAG	2 cut(s)	28, 348
BseNI	ACTGG	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	97, 206, 401
BshFI	GGCC	2 cut(s)	19, 333
BshTI	ACCGGT	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	88
BslI	CCNNNNNNNGG	2 cut(s)	15, 27
BsnI	GGCC	2 cut(s)	19, 333
Bsp143I	GATC	4 cut(s)	3, 121, 172, 240
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	2 cut(s)	19, 333
BspCNI	CTCAG	2 cut(s)	27, 349
BspPI	GGATC	3 cut(s)	116, 180, 235
BspTI	CTTAAG	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	147
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	4 cut(s)	3, 121, 172, 240
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	422, 486
Bst6I	CTCTTC	1 cut(s)	252
BstAFI	CTTAAG	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	14, 357
BstEII	GGTNACC	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	46, 211
BstKTI	GATC	4 cut(s)	6, 124, 175, 243
BstMBI	GATC	4 cut(s)	3, 121, 172, 240
BstNI	CCWGG	1 cut(s)	281
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	279
BstV1I	GCAGC	3 cut(s)	97, 206, 401
BsuRI	GGCC	2 cut(s)	19, 333
BtsCI	GGATG	2 cut(s)	46, 211
Cac8I	GCNNGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	18, 331
Csp6I	GTAC	1 cut(s)	91
CspAI	ACCGGT	1 cut(s)	87
CviAII	CATG	2 cut(s)	176, 264
CviJI	RGCY	9 cut(s)	13, 19, 47, 64, 110, 219, 279, 333, 443
CviKI_1	RGCY	9 cut(s)	13, 19, 47, 64, 110, 219, 279, 333, 443
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	14, 357
DpnI	GATC	4 cut(s)	5, 123, 174, 242
DpnII	GATC	4 cut(s)	3, 121, 172, 240
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	383
Eco91I	GGTNACC	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	279
EcoRV	GATATC	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	2 cut(s)	179, 267
FaiI	YATR	9 cut(s)	69, 71, 73, 96, 177, 195, 265, 354, 446
FatI	CATG	2 cut(s)	175, 263
FauI	CCCGC	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	111, 220, 390
FokI	GGATG	2 cut(s)	53, 218
Fsp4HI	GCNGC	3 cut(s)	111, 220, 390
FspBI	CTAG	3 cut(s)	126, 153, 440
GluI	GCNGC	3 cut(s)	111, 220, 390
GsuI	CTGGAG	1 cut(s)	49
HaeIII	GGCC	2 cut(s)	19, 333
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	2 cut(s)	179, 267
HinfI	GANTC	4 cut(s)	33, 156, 180, 199
HpaII	CCGG	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	491
Hpy188III	TCNNGA	5 cut(s)	28, 153, 203, 301, 398
HpyAV	CCTTC	2 cut(s)	124, 462
HpyCH4III	ACNGT	2 cut(s)	422, 486
HpyCH4V	TGCA	4 cut(s)	168, 222, 345, 389
HpyF3I	CTNAG	2 cut(s)	14, 357
Hsp92II	CATG	2 cut(s)	179, 267
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 121, 172, 240
LpnPI	CCDG	9 cut(s)	13, 61, 101, 128, 160, 188, 266, 293, 441
Lsp1109I	GCAGC	3 cut(s)	97, 206, 401
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	126, 153, 440
MaeIII	GTNAC	2 cut(s)	83, 477
MalI	GATC	4 cut(s)	5, 123, 174, 242
MboI	GATC	4 cut(s)	3, 121, 172, 240
MboII	GAAGA	2 cut(s)	269, 418
MfeI	CAATTG	1 cut(s)	496
MluCI	AATT	2 cut(s)	223, 496
MlyI	GAGTC	2 cut(s)	165, 208
MnlI	CCTC	3 cut(s)	253, 462, 466
MseI	TTAA	2 cut(s)	362, 408
MspCI	CTTAAG	1 cut(s)	407
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	496
MvaI	CCWGG	1 cut(s)	281
NdeII	GATC	4 cut(s)	3, 121, 172, 240
NlaIII	CATG	2 cut(s)	179, 267
PfeI	GAWTC	2 cut(s)	33, 180
PinAI	ACCGGT	1 cut(s)	87
PkrI	GCNGC	3 cut(s)	112, 221, 391
PleI	GAGTC	2 cut(s)	164, 207
PpsI	GAGTC	2 cut(s)	164, 207
Psp6I	CCWGG	1 cut(s)	279
PspEI	GGTNACC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	18, 331
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	362, 408
SatI	GCNGC	3 cut(s)	111, 220, 390
Sau3AI	GATC	4 cut(s)	3, 121, 172, 240
Sau96I	GGNCC	2 cut(s)	18, 331
SchI	GAGTC	2 cut(s)	165, 208
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	5 cut(s)	15, 66, 340, 414, 477
SfaNI	GCATC	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	2 cut(s)	223, 496
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	3 cut(s)	126, 153, 440
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	422, 486
TaqI	TCGA	1 cut(s)	300
TasI	AATT	2 cut(s)	223, 496
TfiI	GAWTC	2 cut(s)	33, 180
Tru1I	TTAA	2 cut(s)	362, 408
Tru9I	TTAA	2 cut(s)	362, 408
TseI	GCWGC	3 cut(s)	110, 219, 389
TspDTI	ATGAA	3 cut(s)	57, 387, 450
TspGWI	ACGGA	1 cut(s)	269
Vha464I	CTTAAG	1 cut(s)	407
XbaI	TCTAGA	1 cut(s)	152
XmaJI	CCTAGG	1 cut(s)	125
XspI	CTAG	3 cut(s)	126, 153, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.