Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001208.1

Orthogroup ID

OG0001341

Physical Location & Seq

Genomic Coordinates Reverse (-)

16106 .. 16888

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001208.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atggcaactctgtctcaaccaacgttgtttcaggagaaggaaaatcttgatctcaatggtaatctttcatttccttcttcttttcatgtttcaaattgttcatctcaccctaattttgccagagcactgagtttcaattccaactccagaaagctccacttggttcttgatcttgatcacacactcctccacaccactcaactttgtaatctgacacctgaagaagactatctcaggatcggaacccatcctcatcgagatgttttcgtgcttgaaactgtgatcaccaagctcaggccctttgtcaggagattcttggatgaagccagcaagatgtttgagctgtatatatacacaaagggtaaccggtactatgcgggtctaatggctaccctgcttgatcctaggaaggagtatttcacttccagttataaagtcatatcgtgcgaggatcacagaatcttggggagatataagagtctggatgctgtggttggctgcaattattctaatgttttgatccttgatgatacagaagaggcatggacaaaggaaagccgggacaatctaatcgttgtcgagaagtattgtttctttaagcacaaaatgggcctagctaaatgcaagtcttatgctgagttaaagactgatgaatgcggatatcttgcggcacttcttgaagtgcttaaggtaatcaaccgtatcttctgtgatgaactagccagaaatccttctggtgtagatgtgagggatgtgttagaactgtttagaaacaattgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

260

Amino Acids

30.0

Weight (kDa)

6.51

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001341)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10330
rosa_chinensis	RchiOBHm_Chr2g0124471 RchiOBHm_Chr2g0128771 RchiOBHm_Chr3g0488911 RchiOBHm_Chr7g0210561 RchiOBHm_Chr7g0211191 RchiOBHm_Chr7g0211371 RchiOBHm_Chr7g0211471 RchiOBHm_Chr7g0211491
rosa_laevigata	RLG00000003001 RLG00000018803 RLG00000022902
rosa_multiflora	Rmu_co8429473.1_g000001 Rmu_sc0001208.1_g000002 Rmu_sc0001303.1_g000009 Rmu_sc0002283.1_g000067 Rmu_sc0005514.1_g000010 Rmu_sc0007204.1_g000013 Rmu_sc0018619.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018290 Rroxscaffold_2G00115300 Rroxscaffold_2G00115330 Rroxscaffold_2G00118520 Rroxscaffold_2G00118830 Rroxscaffold_2G00119890 Rroxscaffold_3G00247870 Rroxscaffold_7G00186360 Rroxscaffold_7G00207860
rosa_rugosa	Rorug02G0280300 Rorug02G0280400 Rorug07G0125400
rosa_samantha	Rh2AG309500 Rh2AG309600 Rh2BG318300 Rh2BG341600 Rh2CG296400 Rh2CG301400 Rh2DG333500 Rh2DG358300 Rh3AG290600 Rh3DG323500 Rh7AG256900 Rh7AG257900 Rh7BG252000 Rh7CG273400 Rh7CG274500 Rh7CG274600 Rh7DG263300 Rh7DG263400 Rh7DG263900 Rh7DG265100 Rh7DG272000
rosa_wichuraiana	Rw2G025010 Rw7G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AciI	CCGC	3 cut(s)	377, 657, 668
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	4 cut(s)	245, 395, 459, 514
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	294, 306
AflII	CTTAAG	1 cut(s)	686
AgeI	ACCGGT	1 cut(s)	366
AgsI	TTSAA	4 cut(s)	93, 136, 275, 680
AluBI	AGCT	4 cut(s)	154, 292, 343, 617
AluI	AGCT	4 cut(s)	154, 292, 343, 617
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	4 cut(s)	245, 395, 459, 514
AoxI	GGCC	2 cut(s)	296, 610
ApeKI	GCWGC	1 cut(s)	498
AsiGI	ACCGGT	1 cut(s)	366
Asp700I	GAANNNNTTC	1 cut(s)	730
AspA2I	CCTAGG	1 cut(s)	404
AspS9I	GGNCC	2 cut(s)	297, 610
AsuC2I	CCSGG	1 cut(s)	560
AsuHPI	GGTGA	2 cut(s)	98, 277
AvrII	CCTAGG	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	1 cut(s)	255
BclI	TGATCA	2 cut(s)	175, 282
BcnI	CCSGG	1 cut(s)	560
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	3 cut(s)	405, 614, 719
BfrI	CTTAAG	1 cut(s)	686
BisI	GCNGC	2 cut(s)	499, 669
BlnI	CCTAGG	1 cut(s)	404
BlsI	GCNGC	2 cut(s)	500, 670
Bme1390I	CCNGG	1 cut(s)	560
BmgT120I	GGNCC	2 cut(s)	297, 610
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	560
BmsI	GCATC	1 cut(s)	475
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	560
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	404
BsaWI	WCCGGW	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 306
Bse118I	RCCGGY	1 cut(s)	366
Bse1I	ACTGG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	4 cut(s)	247, 325, 490, 757
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	294, 306
BseMII	CTCAG	4 cut(s)	119, 247, 307, 627
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	485
BshFI	GGCC	2 cut(s)	298, 612
BshTI	ACCGGT	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	367, 559
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	2 cut(s)	294, 306
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	575
BsmI	GAATGC	1 cut(s)	659
BsnI	GGCC	2 cut(s)	298, 612
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
BspACI	CCGC	3 cut(s)	377, 657, 668
BspANI	GGCC	2 cut(s)	298, 612
BspCNI	CTCAG	4 cut(s)	120, 246, 306, 628
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	4 cut(s)	245, 395, 459, 514
BspTI	CTTAAG	1 cut(s)	686
BsrFI	RCCGGY	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	426
BssAI	RCCGGY	1 cut(s)	366
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
BssT1I	CCWWGG	1 cut(s)	404
Bst4CI	ACNGT	3 cut(s)	280, 701, 765
Bst6I	CTCTTC	1 cut(s)	531
BstAFI	CTTAAG	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	4 cut(s)	128, 233, 293, 636
BstEII	GGTNACC	1 cut(s)	362
BstENI	CCTNNNNNAGG	1 cut(s)	304
BstF5I	GGATG	4 cut(s)	247, 325, 490, 757
BstKTI	GATC	8 cut(s)	52, 172, 178, 240, 285, 403, 454, 522
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
BstPI	GGTNACC	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	485
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	298, 612
BtsCI	GGATG	4 cut(s)	247, 325, 490, 757
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	297, 610
Csp6I	GTAC	1 cut(s)	370
CspAI	ACCGGT	1 cut(s)	366
CviAII	CATG	2 cut(s)	86, 543
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	4 cut(s)	128, 233, 293, 636
DpnI	GATC	8 cut(s)	51, 171, 177, 239, 284, 402, 453, 521
DpnII	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	662
Eco57I	CTGAAG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	362
EcoNI	CCTNNNNNAGG	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	297
EcoO65I	GGTNACC	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	2 cut(s)	89, 546
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	2 cut(s)	85, 542
FauI	CCCGC	1 cut(s)	370
FbaI	TGATCA	2 cut(s)	175, 282
Fnu4HI	GCNGC	2 cut(s)	499, 669
FokI	GGATG	4 cut(s)	234, 332, 497, 764
Fsp4HI	GCNGC	2 cut(s)	499, 669
FspBI	CTAG	3 cut(s)	405, 614, 719
GluI	GCNGC	2 cut(s)	499, 669
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	298, 612
HapII	CCGG	2 cut(s)	367, 559
Hin1II	CATG	2 cut(s)	89, 546
HinfI	GANTC	3 cut(s)	312, 459, 478
HpaII	CCGG	2 cut(s)	367, 559
HphI	GGTGA	2 cut(s)	98, 277
Hpy188I	TCNGA	2 cut(s)	213, 242
HpyAV	CCTTC	4 cut(s)	31, 84, 403, 741
HpyCH4III	ACNGT	3 cut(s)	280, 701, 765
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	501, 624
HpyF3I	CTNAG	4 cut(s)	128, 233, 293, 636
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	89, 546
Ksp22I	TGATCA	2 cut(s)	175, 282
Kzo9I	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
LmnI	GCTCC	1 cut(s)	159
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	3 cut(s)	405, 614, 719
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	8 cut(s)	51, 171, 177, 239, 284, 402, 453, 521
MboI	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
MboII	GAAGA	5 cut(s)	69, 233, 236, 548, 697
MfeI	CAATTG	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	5 cut(s)	94, 112, 136, 502, 775
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	5 cut(s)	197, 261, 442, 532, 741
MroXI	GAANNNNTTC	1 cut(s)	730
MseI	TTAA	3 cut(s)	597, 641, 687
MslI	CAYNNNNRTG	1 cut(s)	258
MspCI	CTTAAG	1 cut(s)	686
MspI	CCGG	2 cut(s)	367, 559
MspR9I	CCNGG	1 cut(s)	560
MunI	CAATTG	1 cut(s)	775
Mva1269I	GAATGC	1 cut(s)	659
NciI	CCSGG	1 cut(s)	560
NdeII	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
NlaIII	CATG	2 cut(s)	89, 546
NlaIV	GGNNCC	1 cut(s)	244
PctI	GAATGC	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	730
PfeI	GAWTC	2 cut(s)	312, 459
PinAI	ACCGGT	1 cut(s)	366
PkrI	GCNGC	2 cut(s)	500, 670
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
PsiI	TTATAA	1 cut(s)	432
Psp1406I	AACGTT	1 cut(s)	23
PspEI	GGTNACC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	297, 610
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	597, 641, 687
SatI	GCNGC	2 cut(s)	499, 669
Sau3AI	GATC	8 cut(s)	49, 169, 175, 237, 282, 400, 451, 519
Sau96I	GGNCC	2 cut(s)	297, 610
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	7 cut(s)	26, 156, 220, 294, 345, 619, 693
SfaNI	GCATC	1 cut(s)	475
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
Sse9I	AATT	5 cut(s)	94, 112, 136, 502, 775
SsiI	CCGC	3 cut(s)	377, 657, 668
SspMI	CTAG	3 cut(s)	405, 614, 719
StyD4I	CCNGG	1 cut(s)	558
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	3 cut(s)	280, 701, 765
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	256, 579
TasI	AATT	5 cut(s)	94, 112, 136, 502, 775
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	2 cut(s)	312, 459
Tru1I	TTAA	3 cut(s)	597, 641, 687
Tru9I	TTAA	3 cut(s)	597, 641, 687
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	1 cut(s)	498
TspDTI	ATGAA	6 cut(s)	57, 74, 90, 336, 666, 729
TspRI	CASTG	1 cut(s)	132
Vha464I	CTTAAG	1 cut(s)	686
XagI	CCTNNNNNAGG	1 cut(s)	304
XmaJI	CCTAGG	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	730
XspI	CTAG	3 cut(s)	405, 614, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.