Rroxscaffold_1G00018290

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
22508650 .. 22514432
5783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00018290.1

Sequence Viewer

Length: 312 bp
ATGCAAACTCATCGTGGCTTCAACTTTTCCGGCCAGAATAATTCCTCAAGAGGTGATCAATGGATTGACTTGGCGGACGATGGCAAATCGTTGATTGAGGCTGCTATGAAGACGCGGCGGGATTGGAGATGGCAATTGTTTCGGCGGATCTCAATGAGCACCGAGTTTCAATTCCAACTCCGAAAGCTCCACTTGGTTCTTGATCTGGATCACACACTCCTCCACACCATTCGACTCGTAATCGACACCGAAGAAGACTATCTCAAGATCGGAACCCATCCTCATCGAGATGTTTTCGTGCTTGAAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

12.26

Weight (kDa)

6.58

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 115
AciI CCGC 4 cut(s) 74, 115, 118, 145
AclWI GGATC 2 cut(s) 155, 216
AcoI YGGCCR 1 cut(s) 31
AgsI TTSAA 3 cut(s) 22, 170, 305
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw21I GWGCWC 1 cut(s) 161
AlwI GGATC 2 cut(s) 155, 216
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 65
BbsI GAAGAC 2 cut(s) 116, 261
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 88
BccI CCATC 3 cut(s) 74, 123, 285
BcgI CGANNNNNNTGC 3 cut(s) 27, 122, 156
BclI TGATCA 1 cut(s) 55
BisI GCNGC 2 cut(s) 102, 116
BlsI GCNGC 2 cut(s) 103, 117
BmiI GGNNCC 1 cut(s) 274
BpiI GAAGAC 2 cut(s) 116, 261
BpuEI CTTGAG 2 cut(s) 31, 248
BsaBI GATNNNNATC 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 207
BseGI GGATG 1 cut(s) 277
BseJI GATNNNNATC 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 1 cut(s) 30
BsnI GGCC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 5 cut(s) 55, 147, 202, 208, 267
BspACI CCGC 4 cut(s) 74, 115, 118, 145
BspANI GGCC 1 cut(s) 33
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 2 cut(s) 155, 216
BssMI GATC 5 cut(s) 55, 147, 202, 208, 267
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 1 cut(s) 115
BstKTI GATC 5 cut(s) 58, 150, 205, 211, 270
BstMBI GATC 5 cut(s) 55, 147, 202, 208, 267
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 2 cut(s) 116, 261
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 277
CseI GACGC 1 cut(s) 121
CviJI RGCY 4 cut(s) 18, 33, 101, 187
CviKI_1 RGCY 4 cut(s) 18, 33, 101, 187
DpnI GATC 5 cut(s) 57, 149, 204, 210, 269
DpnII GATC 5 cut(s) 55, 147, 202, 208, 267
EaeI YGGCCR 1 cut(s) 31
EciI GGCGGA 2 cut(s) 89, 160
FaiI YATR 1 cut(s) 107
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FauI CCCGC 1 cut(s) 111
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 102, 116
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 102, 116
GluI GCNGC 2 cut(s) 102, 116
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 30
HgaI GACGC 1 cut(s) 121
HinfI GANTC 1 cut(s) 234
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 182, 272
Hpy188III TCNNGA 5 cut(s) 48, 200, 206, 265, 287
HpyCH4V TGCA 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 5 cut(s) 55, 147, 202, 208, 267
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 3 cut(s) 43, 47, 191
Lsp1109I GCAGC 1 cut(s) 88
MalI GATC 5 cut(s) 57, 149, 204, 210, 269
MboI GATC 5 cut(s) 55, 147, 202, 208, 267
MboII GAAGA 3 cut(s) 121, 263, 266
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 3 cut(s) 40, 134, 170
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 5 cut(s) 44, 55, 91, 230, 291
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 1 cut(s) 30
MunI CAATTG 1 cut(s) 134
MvnI CGCG 1 cut(s) 115
NdeII GATC 5 cut(s) 55, 147, 202, 208, 267
NlaIV GGNNCC 1 cut(s) 274
PkrI GCNGC 2 cut(s) 103, 117
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 274
PsuI RGATCY 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 288
SatI GCNGC 2 cut(s) 102, 116
Sau3AI GATC 5 cut(s) 55, 147, 202, 208, 267
SchI GAGTC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 161
SetI ASST 2 cut(s) 55, 189
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 46, 263
SmoI CTYRAG 2 cut(s) 46, 263
Sse9I AATT 3 cut(s) 40, 134, 170
SsiI CCGC 4 cut(s) 74, 115, 118, 145
TaqI TCGA 3 cut(s) 232, 243, 286
TasI AATT 3 cut(s) 40, 134, 170
TauI GCSGC 1 cut(s) 118
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.