Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001341

Physical Location & Seq

Genomic Coordinates Forward (+)

28204738 .. 28207018

Gene Structure 2281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG265100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCAACTCTTTCGCCGGATGTCAATGGTAATGTTTCATTTCCAAAAGCTTCTTCTTTTCAAGTTTCAAGTTGTTGTTCTAACCCTAATTTTGCCAGAGCACTGAGTTTGAATTCCAACTCCAGAAAGCTCCACTTGGTTCTTGATCTGGATCACACACTCCTCCACACCACTCAACTCTGTAATCTGACACCTGAAGAAGACTATCTCAAGAACGGAACCCATCCTCATCGAGATGTTTTCGTGCTTGAAACTGTGATCACCAAGCTCAGGCCCTTTGTCTGGAGATTCTTGGATGAAGCCAGCAAGATGTTTGAGCTGTACATATACACAAAGGGTAACCGGTACTATGCGGGTCTAATGGCTGCCCTGCTTGATCCTAGGAAGCAGTATTTCCCTTCCAGTTCTAGAGTCATATCGTGCGAGGATCATGGAATCTTGGGGAGATCTAAGAGTCTGGATGCTGTGGTTGGCTGCAATTATTCCAATGTTTTGATCCTTGATGATACAGAAGAGGCATGGGCAAAGGAAAGCCGGGACAATCTAATAGTTGTCGACAAGTATTGTTTCTTTAGGCACAAAATGGGCCTACCTAAACGCAAGTCTTATGCTGAGTTAAAGACTGATGAATGTGGATATCTTGCAGCACTTCTTGAAGTGCTTAAGGTAATCAACCGTATCTTCTGTGATGAACTAGCCAGAAATCCTTCTGGTGTAGATGTGAGGGATGTGTTACAACTGTTTCGAAACAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

252

Amino Acids

28.67

Weight (kDa)

7.56

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	45 - 190	1.6e-22	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001341)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10330
rosa_chinensis	RchiOBHm_Chr2g0124471 RchiOBHm_Chr2g0128771 RchiOBHm_Chr3g0488911 RchiOBHm_Chr7g0210561 RchiOBHm_Chr7g0211191 RchiOBHm_Chr7g0211371 RchiOBHm_Chr7g0211471 RchiOBHm_Chr7g0211491
rosa_laevigata	RLG00000003001 RLG00000018803 RLG00000022902
rosa_multiflora	Rmu_co8429473.1_g000001 Rmu_sc0001208.1_g000002 Rmu_sc0001303.1_g000009 Rmu_sc0002283.1_g000067 Rmu_sc0005514.1_g000010 Rmu_sc0007204.1_g000013 Rmu_sc0018619.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018290 Rroxscaffold_2G00115300 Rroxscaffold_2G00115330 Rroxscaffold_2G00118520 Rroxscaffold_2G00118830 Rroxscaffold_2G00119890 Rroxscaffold_3G00247870 Rroxscaffold_7G00186360 Rroxscaffold_7G00207860
rosa_rugosa	Rorug02G0280300 Rorug02G0280400 Rorug07G0125400
rosa_samantha	Rh2AG309500 Rh2AG309600 Rh2BG318300 Rh2BG341600 Rh2CG296400 Rh2CG301400 Rh2DG333500 Rh2DG358300 Rh3AG290600 Rh3DG323500 Rh7AG256900 Rh7AG257900 Rh7BG252000 Rh7CG273400 Rh7CG274500 Rh7CG274600 Rh7DG263300 Rh7DG263400 Rh7DG263900 Rh7DG265100 Rh7DG272000
rosa_wichuraiana	Rw2G025010 Rw7G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	4 cut(s)	159, 371, 435, 490
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	2 cut(s)	323, 347
AfiI	CCNNNNNNNGG	2 cut(s)	270, 282
AflII	CTTAAG	1 cut(s)	662
AgeI	ACCGGT	1 cut(s)	342
AgsI	TTSAA	5 cut(s)	62, 69, 112, 251, 656
AjuI	GAANNNNNNNTTGG	2 cut(s)	37, 69
AluBI	AGCT	4 cut(s)	50, 130, 268, 319
AluI	AGCT	4 cut(s)	50, 130, 268, 319
Alw21I	GWGCWC	1 cut(s)	103
AlwI	GGATC	4 cut(s)	159, 371, 435, 490
AoxI	GGCC	2 cut(s)	272, 586
ApeKI	GCWGC	3 cut(s)	365, 474, 644
ApoI	RAATTY	1 cut(s)	112
AsiGI	ACCGGT	1 cut(s)	342
Asp700I	GAANNNNTTC	1 cut(s)	706
AspA2I	CCTAGG	1 cut(s)	380
AspS9I	GGNCC	2 cut(s)	273, 586
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	253
AsuII	TTCGAA	1 cut(s)	745
AvrII	CCTAGG	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	3 cut(s)	352, 461, 656
BccI	CCATC	1 cut(s)	231
BcgI	CGANNNNNNTGC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	258
BcnI	CCSGG	1 cut(s)	536
BfaI	CTAG	3 cut(s)	381, 408, 695
BfrI	CTTAAG	1 cut(s)	662
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	3 cut(s)	366, 475, 645
BlnI	CCTAGG	1 cut(s)	380
BlsI	GCNGC	3 cut(s)	367, 476, 646
Bme1390I	CCNGG	1 cut(s)	536
BmgT120I	GGNCC	2 cut(s)	273, 586
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	2 cut(s)	106, 304
Bpu10I	CCTNAGC	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	745
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	380
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 282
Bse118I	RCCGGY	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	5 cut(s)	25, 223, 301, 466, 733
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	270, 282
BseMII	CTCAG	3 cut(s)	95, 283, 603
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	352, 461, 656
BshFI	GGCC	2 cut(s)	274, 588
BshTI	ACCGGT	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	3 cut(s)	17, 343, 535
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	2 cut(s)	270, 282
BsmFI	GGGAC	1 cut(s)	551
BsnI	GGCC	2 cut(s)	274, 588
Bsp119I	TTCGAA	1 cut(s)	745
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	7 cut(s)	145, 151, 258, 376, 427, 446, 495
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	2 cut(s)	274, 588
BspCNI	CTCAG	3 cut(s)	96, 282, 604
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	4 cut(s)	159, 371, 435, 490
BspT104I	TTCGAA	1 cut(s)	745
BspTI	CTTAAG	1 cut(s)	662
BsrFI	RCCGGY	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	402
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	7 cut(s)	145, 151, 258, 376, 427, 446, 495
BssT1I	CCWWGG	1 cut(s)	380
Bst4CI	ACNGT	3 cut(s)	256, 677, 741
Bst6I	CTCTTC	1 cut(s)	507
BstAFI	CTTAAG	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	321
BstBI	TTCGAA	1 cut(s)	745
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	4 cut(s)	104, 269, 450, 612
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	5 cut(s)	25, 223, 301, 466, 733
BstKTI	GATC	7 cut(s)	148, 154, 261, 379, 430, 449, 498
BstMBI	GATC	7 cut(s)	145, 151, 258, 376, 427, 446, 495
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	534
BstV1I	GCAGC	3 cut(s)	352, 461, 656
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BsuRI	GGCC	2 cut(s)	274, 588
BtsCI	GGATG	5 cut(s)	25, 223, 301, 466, 733
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	273, 586
Csp6I	GTAC	2 cut(s)	322, 346
CspAI	ACCGGT	1 cut(s)	342
CviAII	CATG	2 cut(s)	431, 519
CviQI	GTAC	2 cut(s)	322, 346
DdeI	CTNAG	4 cut(s)	104, 269, 450, 612
DpnI	GATC	7 cut(s)	147, 153, 260, 378, 429, 448, 497
DpnII	GATC	7 cut(s)	145, 151, 258, 376, 427, 446, 495
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	380
Eco32I	GATATC	1 cut(s)	638
Eco57I	CTGAAG	1 cut(s)	216
Eco91I	GGTNACC	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	273
EcoO65I	GGTNACC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	112
EcoRV	GATATC	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	2 cut(s)	434, 522
FaiI	YATR	7 cut(s)	326, 328, 351, 416, 432, 520, 609
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	2 cut(s)	430, 518
FauI	CCCGC	1 cut(s)	346
FbaI	TGATCA	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	3 cut(s)	366, 475, 645
FokI	GGATG	5 cut(s)	32, 210, 308, 473, 740
Fsp4HI	GCNGC	3 cut(s)	366, 475, 645
FspBI	CTAG	3 cut(s)	381, 408, 695
GluI	GCNGC	3 cut(s)	366, 475, 645
GsuI	CTGGAG	2 cut(s)	106, 304
HaeIII	GGCC	2 cut(s)	274, 588
HapII	CCGG	3 cut(s)	17, 343, 535
Hin1II	CATG	2 cut(s)	434, 522
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	4 cut(s)	288, 411, 435, 454
HpaII	CCGG	3 cut(s)	17, 343, 535
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	9 cut(s)	123, 143, 149, 211, 233, 283, 408, 458, 653
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	2 cut(s)	408, 717
HpyCH4III	ACNGT	3 cut(s)	256, 677, 741
HpyCH4V	TGCA	2 cut(s)	477, 644
HpyF3I	CTNAG	4 cut(s)	104, 269, 450, 612
Hsp92II	CATG	2 cut(s)	434, 522
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	7 cut(s)	145, 151, 258, 376, 427, 446, 495
LmnI	GCTCC	1 cut(s)	135
Lsp1109I	GCAGC	3 cut(s)	352, 461, 656
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	3 cut(s)	381, 408, 695
MaeIII	GTNAC	2 cut(s)	338, 732
MalI	GATC	7 cut(s)	147, 153, 260, 378, 429, 448, 497
MboI	GATC	7 cut(s)	145, 151, 258, 376, 427, 446, 495
MboII	GAAGA	5 cut(s)	45, 209, 212, 524, 673
MfeI	CAATTG	1 cut(s)	751
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	4 cut(s)	88, 112, 478, 751
MlyI	GAGTC	2 cut(s)	420, 463
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	173, 237, 418, 508, 717
MroXI	GAANNNNTTC	1 cut(s)	706
MseI	TTAA	2 cut(s)	617, 663
MslI	CAYNNNNRTG	1 cut(s)	234
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	3 cut(s)	17, 343, 535
MspR9I	CCNGG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	751
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	7 cut(s)	145, 151, 258, 376, 427, 446, 495
NlaIII	CATG	2 cut(s)	434, 522
NlaIV	GGNNCC	1 cut(s)	220
NspV	TTCGAA	1 cut(s)	745
PdmI	GAANNNNTTC	1 cut(s)	706
PfeI	GAWTC	2 cut(s)	288, 435
PinAI	ACCGGT	1 cut(s)	342
PkrI	GCNGC	3 cut(s)	367, 476, 646
PleI	GAGTC	2 cut(s)	419, 462
PpsI	GAGTC	2 cut(s)	419, 462
PspEI	GGTNACC	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	273, 586
PsuI	RGATCY	1 cut(s)	446
RsaI	GTAC	2 cut(s)	323, 347
RsaNI	GTAC	2 cut(s)	322, 346
RseI	CAYNNNNRTG	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	554
SaqAI	TTAA	2 cut(s)	617, 663
SatI	GCNGC	3 cut(s)	366, 475, 645
Sau3AI	GATC	7 cut(s)	145, 151, 258, 376, 427, 446, 495
Sau96I	GGNCC	2 cut(s)	273, 586
SchI	GAGTC	2 cut(s)	420, 463
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	7 cut(s)	52, 132, 196, 270, 321, 595, 669
SfaNI	GCATC	1 cut(s)	451
SfuI	TTCGAA	1 cut(s)	745
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	2 cut(s)	209, 662
SmoI	CTYRAG	2 cut(s)	209, 662
Sse9I	AATT	4 cut(s)	88, 112, 478, 751
SsiI	CCGC	1 cut(s)	353
SspMI	CTAG	3 cut(s)	381, 408, 695
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	3 cut(s)	256, 677, 741
TaqI	TCGA	3 cut(s)	232, 555, 745
TasI	AATT	4 cut(s)	88, 112, 478, 751
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	2 cut(s)	288, 435
Tru1I	TTAA	2 cut(s)	617, 663
Tru9I	TTAA	2 cut(s)	617, 663
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	3 cut(s)	365, 474, 644
TspDTI	ATGAA	4 cut(s)	27, 312, 642, 705
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	108
Vha464I	CTTAAG	1 cut(s)	662
XapI	RAATTY	1 cut(s)	112
XbaI	TCTAGA	1 cut(s)	407
XmaJI	CCTAGG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	555
XmnI	GAANNNNTTC	1 cut(s)	706
XspI	CTAG	3 cut(s)	381, 408, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.