Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001341

Physical Location & Seq

Genomic Coordinates Forward (+)

28557272 .. 28559299

Gene Structure 2028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18910

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCAACTCTTTCGCCGGATGTCAATGCACTGAGTTTCAATTCCAACTCCAGAAAGCTCCACTTGGTTCTTGATCTGGATCACACACTCCTCCACACCACTCAACTCTGTAATCTGACACCTGAAGAAGACTATCTCAAGATCGGAACCCATCCTCATCGAGATGTTTTCGTGCTTGAAACTGTGATCACCAAGCTCAGGCCCTTTGTCTGGAGATTCTTGGATGAAGCCAGCAAGATGTTTGAGCTGTATATATACACAAAGGGTAACCGGTACTATGCGGGTCTAATGGCTGCCCTGCTTGATCCTAGGAAGGAGTATTTCCCTTCCAGTTCTAGAGTCATATCCTGCGAGGATCACGGAATCGTGGGGAGATATAAGAGTCTGGATGCTGTGGTTGGCTGCAATTATTCTAATGTTTTGATTCTTGATGATACAGAAGCGGCATGGACAAAGGAAAGCCGGGACAATCTAATCGTTGTCGAGAAGTATTGTTTCTTTAGGCACAAAATGGGCCTACCTAAATGCAAGTCTTATGCTGAGTTAAAGACTGATGAATGTGGATATCTTGCAGCAGCACTTCTTGAAGTGCTTAACGTAATCAACCGTATCTTCTGTGATGAACTAGCCATAAATCCTTCTGGTGTAGATGTGAGGGATGTGTTACAACTGTTTGGAAACAATTCGTCAAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

232

Amino Acids

26.38

Weight (kDa)

5.98

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	21 - 169	5.2e-23	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001341)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10330
rosa_chinensis	RchiOBHm_Chr2g0124471 RchiOBHm_Chr2g0128771 RchiOBHm_Chr3g0488911 RchiOBHm_Chr7g0210561 RchiOBHm_Chr7g0211191 RchiOBHm_Chr7g0211371 RchiOBHm_Chr7g0211471 RchiOBHm_Chr7g0211491
rosa_laevigata	RLG00000003001 RLG00000018803 RLG00000022902
rosa_multiflora	Rmu_co8429473.1_g000001 Rmu_sc0001208.1_g000002 Rmu_sc0001303.1_g000009 Rmu_sc0002283.1_g000067 Rmu_sc0005514.1_g000010 Rmu_sc0007204.1_g000013 Rmu_sc0018619.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018290 Rroxscaffold_2G00115300 Rroxscaffold_2G00115330 Rroxscaffold_2G00118520 Rroxscaffold_2G00118830 Rroxscaffold_2G00119890 Rroxscaffold_3G00247870 Rroxscaffold_7G00186360 Rroxscaffold_7G00207860
rosa_rugosa	Rorug02G0280300 Rorug02G0280400 Rorug07G0125400
rosa_samantha	Rh2AG309500 Rh2AG309600 Rh2BG318300 Rh2BG341600 Rh2CG296400 Rh2CG301400 Rh2DG333500 Rh2DG358300 Rh3AG290600 Rh3DG323500 Rh7AG256900 Rh7AG257900 Rh7BG252000 Rh7CG273400 Rh7CG274500 Rh7CG274600 Rh7DG263300 Rh7DG263400 Rh7DG263900 Rh7DG265100 Rh7DG272000
rosa_wichuraiana	Rw2G025010 Rw7G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	281, 443
AclWI	GGATC	3 cut(s)	87, 299, 363
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	198, 210
AgeI	ACCGGT	1 cut(s)	270
AgsI	TTSAA	3 cut(s)	40, 179, 587
AluBI	AGCT	3 cut(s)	58, 196, 247
AluI	AGCT	3 cut(s)	58, 196, 247
AlwI	GGATC	3 cut(s)	87, 299, 363
AoxI	GGCC	2 cut(s)	200, 514
ApeKI	GCWGC	4 cut(s)	293, 402, 572, 575
AsiGI	ACCGGT	1 cut(s)	270
Asp700I	GAANNNNTTC	1 cut(s)	682
AspA2I	CCTAGG	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	201, 514
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	1 cut(s)	181
AvrII	CCTAGG	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	280, 389, 584, 587
BccI	CCATC	1 cut(s)	159
BcgI	CGANNNNNNTGC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	464
BfaI	CTAG	3 cut(s)	309, 336, 626
BisI	GCNGC	5 cut(s)	294, 403, 444, 573, 576
BlnI	CCTAGG	1 cut(s)	308
BlsI	GCNGC	5 cut(s)	295, 404, 445, 574, 577
Bme1390I	CCNGG	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	201, 514
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	135
BpmI	CTGGAG	2 cut(s)	34, 232
Bpu10I	CCTNAGC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	308
BsaWI	WCCGGW	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 210
Bse118I	RCCGGY	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	5 cut(s)	25, 151, 229, 394, 664
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	198, 210
BseMII	CTCAG	3 cut(s)	23, 211, 531
BseNI	ACTGG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	4 cut(s)	280, 389, 584, 587
BshFI	GGCC	2 cut(s)	202, 516
BshTI	ACCGGT	1 cut(s)	270
BsiSI	CCGG	3 cut(s)	17, 271, 463
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	2 cut(s)	198, 210
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	2 cut(s)	202, 516
Bsp143I	GATC	6 cut(s)	73, 79, 141, 186, 304, 355
BspACI	CCGC	2 cut(s)	281, 443
BspANI	GGCC	2 cut(s)	202, 516
BspCNI	CTCAG	3 cut(s)	24, 210, 532
BspLI	GGNNCC	1 cut(s)	148
BspPI	GGATC	3 cut(s)	87, 299, 363
BsrFI	RCCGGY	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	6 cut(s)	73, 79, 141, 186, 304, 355
BssT1I	CCWWGG	1 cut(s)	308
Bst4CI	ACNGT	3 cut(s)	184, 608, 672
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	3 cut(s)	32, 197, 540
BstEII	GGTNACC	1 cut(s)	266
BstF5I	GGATG	5 cut(s)	25, 151, 229, 394, 664
BstKTI	GATC	6 cut(s)	76, 82, 144, 189, 307, 358
BstMBI	GATC	6 cut(s)	73, 79, 141, 186, 304, 355
BstPI	GGTNACC	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	462
BstV1I	GCAGC	4 cut(s)	280, 389, 584, 587
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	202, 516
BtsCI	GGATG	5 cut(s)	25, 151, 229, 394, 664
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	201, 514
Csp6I	GTAC	1 cut(s)	274
CspAI	ACCGGT	1 cut(s)	270
CviAII	CATG	1 cut(s)	447
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	3 cut(s)	32, 197, 540
DpnI	GATC	6 cut(s)	75, 81, 143, 188, 306, 357
DpnII	GATC	6 cut(s)	73, 79, 141, 186, 304, 355
Eco130I	CCWWGG	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	144
Eco91I	GGTNACC	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	201
EcoO65I	GGTNACC	1 cut(s)	266
EcoRV	GATATC	1 cut(s)	566
EcoT14I	CCWWGG	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	1 cut(s)	450
FaiI	YATR	9 cut(s)	252, 254, 256, 279, 344, 378, 448, 537, 632
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	1 cut(s)	446
FauI	CCCGC	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	294, 403, 444, 573, 576
FokI	GGATG	5 cut(s)	32, 138, 236, 401, 671
Fsp4HI	GCNGC	5 cut(s)	294, 403, 444, 573, 576
FspBI	CTAG	3 cut(s)	309, 336, 626
GluI	GCNGC	5 cut(s)	294, 403, 444, 573, 576
GsuI	CTGGAG	2 cut(s)	34, 232
HaeIII	GGCC	2 cut(s)	202, 516
HapII	CCGG	3 cut(s)	17, 271, 463
Hin1II	CATG	1 cut(s)	450
HinfI	GANTC	5 cut(s)	216, 339, 363, 382, 424
HpaII	CCGG	3 cut(s)	17, 271, 463
HphI	GGTGA	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	117, 146
HpyAV	CCTTC	3 cut(s)	307, 336, 648
HpyCH4III	ACNGT	3 cut(s)	184, 608, 672
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	4 cut(s)	29, 405, 528, 572
HpyF3I	CTNAG	3 cut(s)	32, 197, 540
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	1 cut(s)	450
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	6 cut(s)	73, 79, 141, 186, 304, 355
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	4 cut(s)	280, 389, 584, 587
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	3 cut(s)	309, 336, 626
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	2 cut(s)	266, 663
MalI	GATC	6 cut(s)	75, 81, 143, 188, 306, 357
MboI	GATC	6 cut(s)	73, 79, 141, 186, 304, 355
MboII	GAAGA	3 cut(s)	137, 140, 604
MluCI	AATT	3 cut(s)	40, 406, 682
MlyI	GAGTC	2 cut(s)	348, 391
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	5 cut(s)	101, 165, 346, 648, 686
MroXI	GAANNNNTTC	1 cut(s)	682
MseI	TTAA	2 cut(s)	545, 594
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	3 cut(s)	17, 271, 463
MspR9I	CCNGG	1 cut(s)	464
NciI	CCSGG	1 cut(s)	464
NdeII	GATC	6 cut(s)	73, 79, 141, 186, 304, 355
NlaIII	CATG	1 cut(s)	450
NlaIV	GGNNCC	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	682
PfeI	GAWTC	3 cut(s)	216, 363, 424
PinAI	ACCGGT	1 cut(s)	270
PkrI	GCNGC	5 cut(s)	295, 404, 445, 574, 577
PleI	GAGTC	2 cut(s)	347, 390
PpsI	GAGTC	2 cut(s)	347, 390
PspEI	GGTNACC	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	201, 514
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	545, 594
SatI	GCNGC	5 cut(s)	294, 403, 444, 573, 576
Sau3AI	GATC	6 cut(s)	73, 79, 141, 186, 304, 355
Sau96I	GGNCC	2 cut(s)	201, 514
SchI	GAGTC	2 cut(s)	348, 391
ScrFI	CCNGG	1 cut(s)	464
SetI	ASST	7 cut(s)	60, 124, 198, 249, 523, 600, 697
SfaNI	GCATC	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	40, 406, 682
SsiI	CCGC	2 cut(s)	281, 443
SspMI	CTAG	3 cut(s)	309, 336, 626
StyD4I	CCNGG	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	3 cut(s)	184, 608, 672
TaiI	ACGT	1 cut(s)	600
TaqI	TCGA	2 cut(s)	160, 483
TasI	AATT	3 cut(s)	40, 406, 682
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	3 cut(s)	216, 363, 424
Tru1I	TTAA	2 cut(s)	545, 594
Tru9I	TTAA	2 cut(s)	545, 594
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	4 cut(s)	293, 402, 572, 575
TspDTI	ATGAA	3 cut(s)	240, 570, 636
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	1 cut(s)	36
XbaI	TCTAGA	1 cut(s)	335
XmaJI	CCTAGG	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	682
XspI	CTAG	3 cut(s)	309, 336, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.