Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004857

Physical Location & Seq

Genomic Coordinates Reverse (-)

8833848 .. 8834734

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCAGTTCAAGGAAGCTCCCACGCCAGGCTTAGAAGCTATGTCATAAATGTCATTAACAAACCCGACGCTCTACGCCGCATTGCACAACTAGTTCAGCCGCGAATGTTGGCTGCATTTCAGTCATGGGCTCTCAAAGGTAGAATCAAAGCATATGACGAAGCTAAGAAGCCAACGTTTGATAATATTGGAAAACTTTTTGTAAGTTTGGAGCCAGGGCCTCTCCTGGATACCATTGATAACTTGTTTGAAGGATTGCTAAAAGGAATTAGAGCTCAACCCTTGCATGTTCCTGGATCTGCTTATCACTCTGCTCTTCAGTGTAGGAGGAAGCTTGAAGCGATTTTCAGGGTGGAGTTAGAGAAGAAAAGAAATCGAAAAGAAGAAGTGACTACTGATCTGATGGATGGGCTTATGCAAATCAAAGATGATGAGGGTGATCAATTAAGTGACAAAGATCGAGGTGATAGATATATAACATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

162

Amino Acids

18.3

Weight (kDa)

9.38

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15580 FvH4_5g15590 FvH4_5g15600 FvH4_5g15640 FvH4_5g15650
malus_domestica	MD06G1187100.v1.1 MD06G1187200.v1.1 MD14G1193400.v1.1 MD14G1193600.v1.1 MD17G1187100.v1.1
prunus_persica	Prupe.5G185400_v2.0.a1 Prupe.5G185400_v2.0.a1
pyrus_communis	pycom03g15850
rosa_chinensis	RchiOBHm_Chr7g0180481
rosa_laevigata	RLG00000005261 RLG00000005262 RLG00000005263
rosa_multiflora	Rmu_sc0003322.1_g000007 Rmu_sc0005690.1_g000006 Rmu_sc0006136.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272840
rosa_rugosa	Rorug01G0019900 Rorug01G0020000 Rorug06G0433100
rosa_samantha	Rh7AG034200 Rh7BG034100 Rh7CG035900 Rh7CG036000 Rh7DG034600 Rh7DG034700
rosa_wichuraiana	Rw7G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	103
AciI	CCGC	2 cut(s)	79, 101
AclI	AACGTT	1 cut(s)	176
AclWI	GGATC	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	11, 251, 338
AhlI	ACTAGT	1 cut(s)	91
AjnI	CCWGG	4 cut(s)	26, 214, 225, 292
AluBI	AGCT	5 cut(s)	18, 39, 164, 275, 334
AluI	AGCT	5 cut(s)	18, 39, 164, 275, 334
Alw21I	GWGCWC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	304
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	449, 476
BanII	GRGCYC	2 cut(s)	133, 277
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	2 cut(s)	397, 401
BciT130I	CCWGG	4 cut(s)	28, 216, 227, 294
BciVI	GTATCC	1 cut(s)	223
BclI	TGATCA	1 cut(s)	439
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	3 cut(s)	79, 101, 114
BlsI	GCNGC	3 cut(s)	80, 102, 115
Bme1390I	CCNGG	4 cut(s)	28, 216, 227, 294
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	4 cut(s)	28, 216, 227, 294
BsaJI	CCNNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	4 cut(s)	28, 216, 227, 294
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	27
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	2 cut(s)	133, 277
Bsp143I	GATC	4 cut(s)	296, 397, 439, 457
BspACI	CCGC	2 cut(s)	79, 101
BspANI	GGCC	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	304
BspQI	GCTCTTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	4 cut(s)	296, 397, 439, 457
Bst2UI	CCWGG	4 cut(s)	28, 216, 227, 294
Bst6I	CTCTTC	1 cut(s)	321
BstDEI	CTNAG	2 cut(s)	32, 165
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	1 cut(s)	103
BstKTI	GATC	4 cut(s)	299, 400, 442, 460
BstMBI	GATC	4 cut(s)	296, 397, 439, 457
BstNI	CCWGG	4 cut(s)	28, 216, 227, 294
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	4 cut(s)	26, 214, 225, 292
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	218
CseI	GACGC	1 cut(s)	77
CviAII	CATG	2 cut(s)	126, 287
DdeI	CTNAG	2 cut(s)	32, 165
DpnI	GATC	4 cut(s)	298, 399, 441, 459
DpnII	GATC	4 cut(s)	296, 397, 439, 457
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	275
Eco24I	GRGCYC	2 cut(s)	133, 277
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	4 cut(s)	26, 214, 225, 292
EcoT38I	GRGCYC	2 cut(s)	133, 277
FaeI	CATG	2 cut(s)	129, 290
FaiI	YATR	9 cut(s)	42, 47, 127, 154, 156, 288, 416, 474, 476
FatI	CATG	2 cut(s)	125, 286
FauNDI	CATATG	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	3 cut(s)	79, 101, 114
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	2 cut(s)	133, 277
Fsp4HI	GCNGC	3 cut(s)	79, 101, 114
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	3 cut(s)	79, 101, 114
HaeIII	GGCC	1 cut(s)	220
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	2 cut(s)	129, 290
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	1 cut(s)	144
HphI	GGTGA	2 cut(s)	449, 476
Hpy188I	TCNGA	1 cut(s)	402
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	4 cut(s)	86, 116, 286, 418
HpyF3I	CTNAG	2 cut(s)	32, 165
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	129, 290
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	4 cut(s)	296, 397, 439, 457
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	2 cut(s)	23, 211
LpnPI	CCDG	9 cut(s)	13, 40, 201, 212, 228, 239, 279, 306, 334
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	388, 449
MalI	GATC	4 cut(s)	298, 399, 441, 459
MboI	GATC	4 cut(s)	296, 397, 439, 457
MboII	GAAGA	3 cut(s)	308, 376, 395
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	2 cut(s)	133, 277
MluCI	AATT	2 cut(s)	267, 443
MnlI	CCTC	4 cut(s)	231, 321, 427, 455
MseI	TTAA	2 cut(s)	57, 446
MspR9I	CCNGG	4 cut(s)	28, 216, 227, 294
MvaI	CCWGG	4 cut(s)	28, 216, 227, 294
MvnI	CGCG	1 cut(s)	103
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	4 cut(s)	296, 397, 439, 457
NlaIII	CATG	2 cut(s)	129, 290
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	388, 449
NspI	RCATGY	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	144
PfoI	TCCNGGA	2 cut(s)	225, 292
PkrI	GCNGC	3 cut(s)	80, 102, 115
Psp124BI	GAGCTC	1 cut(s)	277
Psp1406I	AACGTT	1 cut(s)	176
Psp6I	CCWGG	4 cut(s)	26, 214, 225, 292
PspGI	CCWGG	4 cut(s)	26, 214, 225, 292
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	296
SacI	GAGCTC	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	57, 446
SatI	GCNGC	3 cut(s)	79, 101, 114
Sau3AI	GATC	4 cut(s)	296, 397, 439, 457
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	4 cut(s)	28, 216, 227, 294
SduI	GDGCHC	2 cut(s)	133, 277
SetI	ASST	8 cut(s)	20, 41, 142, 166, 179, 277, 336, 466
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	2 cut(s)	267, 443
SsiI	CCGC	2 cut(s)	79, 101
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	4 cut(s)	26, 214, 225, 292
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	2 cut(s)	376, 460
TasI	AATT	2 cut(s)	267, 443
TauI	GCSGC	2 cut(s)	81, 103
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	2 cut(s)	57, 446
Tru9I	TTAA	2 cut(s)	57, 446
TscAI	CASTG	1 cut(s)	326
TseFI	GTSAC	2 cut(s)	388, 449
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	2 cut(s)	388, 449
TspRI	CASTG	1 cut(s)	326
XceI	RCATGY	1 cut(s)	290
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.