Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006136.1

Orthogroup ID

OG0004857

Physical Location & Seq

Genomic Coordinates Reverse (-)

5195 .. 6497

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006136.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgtacagaacacacatgttcggaaagccatccatcataacctgcttaccggagatcaacaaattagtattccaatcagaggagaactttcccctaaattggcctaatgttgatattttaggttcttgttctttggtagcagttcatggaagctcccatgcaaggcttagaagctacgtcgtgaatgtcattaacaaacctgatgctctgcgccgcattgccggactagttcagccacgtatagtggctgcattggagtcatgggcactcaaaggtagaataaaagcatatgatgaatctaagaaggtaacatttgaaaatattggaaaattattcgcaagtttggagccggggcctctcctagataccattgataaattgtttgagggagtggtcaaaggaattagagctcaaccattcaatgttcctggatctgcttatcaccatgctcttcagtgccaacgtccatccttaggcctcgatcatgcgttgttggcggtgctgctgttgcccgtgccgaatcaggcctggatgttgagcctcttcttgtcactggactcatcaatgaagagttcgaagtcgaccttgatggtgcttccatgcaaaggaattagagctcaaccattcaatgttcctggatctgcttatcaccatgctcttcagtgccaacgtccatccttaggcctcgatcaggcgttgttggcggtgctgctgttgccagtgccgaatcaggcctggatgttgagcctcttcttgtcactggactcatcaatgaagagttcgaagtcgaccttgatggatgtcgatgaagagttcgaagtcaaccttgatggtgcttccatggtttcaggcaagcttgccacacataccttcgacttcgatcacctgagccttcgccttgatggtgacgttgtccaagatattcagagtcttcgtccgacaacagcagcgccaccaacgatgccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

322

Amino Acids

35.34

Weight (kDa)

7.71

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15580 FvH4_5g15590 FvH4_5g15600 FvH4_5g15640 FvH4_5g15650
malus_domestica	MD06G1187100.v1.1 MD06G1187200.v1.1 MD14G1193400.v1.1 MD14G1193600.v1.1 MD17G1187100.v1.1
prunus_persica	Prupe.5G185400_v2.0.a1 Prupe.5G185400_v2.0.a1
pyrus_communis	pycom03g15850
rosa_chinensis	RchiOBHm_Chr7g0180481
rosa_laevigata	RLG00000005261 RLG00000005262 RLG00000005263
rosa_multiflora	Rmu_sc0003322.1_g000007 Rmu_sc0005690.1_g000006 Rmu_sc0006136.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272840
rosa_rugosa	Rorug01G0019900 Rorug01G0020000 Rorug06G0433100
rosa_samantha	Rh7AG034200 Rh7BG034100 Rh7CG035900 Rh7CG036000 Rh7DG034600 Rh7DG034700
rosa_wichuraiana	Rw7G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AccI	GTMKAC	2 cut(s)	581, 788
AciI	CCGC	3 cut(s)	214, 497, 704
AclWI	GGATC	2 cut(s)	439, 646
AcuI	CTGAAG	2 cut(s)	437, 644
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	7 cut(s)	79, 99, 162, 473, 605, 680, 691
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	317, 421, 628
AhlI	ACTAGT	1 cut(s)	226
AjnI	CCWGG	4 cut(s)	427, 527, 634, 734
AluBI	AGCT	5 cut(s)	153, 174, 410, 617, 856
AluI	AGCT	5 cut(s)	153, 174, 410, 617, 856
Alw21I	GWGCWC	2 cut(s)	412, 619
AlwI	GGATC	2 cut(s)	439, 646
AoxI	GGCC	6 cut(s)	101, 353, 475, 525, 682, 732
ApeKI	GCWGC	4 cut(s)	248, 502, 709, 947
AspLEI	GCGC	2 cut(s)	213, 952
AspS9I	GGNCC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	4 cut(s)	434, 641, 875, 917
AsuII	TTCGAA	3 cut(s)	575, 782, 816
AxyI	CCTNAGG	2 cut(s)	472, 679
BaeGI	GKGCMC	1 cut(s)	268
BanII	GRGCYC	2 cut(s)	412, 619
BbsI	GAAGAC	1 cut(s)	923
Bbv12I	GWGCWC	2 cut(s)	412, 619
BbvI	GCAGC	4 cut(s)	235, 489, 696, 959
BccI	CCATC	8 cut(s)	37, 41, 475, 583, 682, 790, 824, 896
BciT130I	CCWGG	4 cut(s)	429, 529, 636, 736
BcnI	CCSGG	1 cut(s)	351
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	2 cut(s)	227, 362
BfoI	RGCGCY	1 cut(s)	953
BfuAI	ACCTGC	1 cut(s)	50
BisI	GCNGC	5 cut(s)	214, 249, 503, 710, 948
BlsI	GCNGC	5 cut(s)	215, 250, 504, 711, 949
Bme1390I	CCNGG	5 cut(s)	351, 429, 529, 636, 736
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	2 cut(s)	348, 354
BmrFI	CCNGG	5 cut(s)	351, 429, 529, 636, 736
BmsI	GCATC	2 cut(s)	193, 951
BpiI	GAAGAC	1 cut(s)	923
Bpu10I	CCTNAGC	1 cut(s)	887
Bpu14I	TTCGAA	3 cut(s)	575, 782, 816
BpuMI	CCSGG	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	350, 840
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	7 cut(s)	79, 99, 162, 473, 605, 680, 691
Bse1I	ACTGG	3 cut(s)	558, 719, 765
Bse21I	CCTNAGG	2 cut(s)	472, 679
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	4 cut(s)	429, 529, 636, 736
BseDI	CCNNGG	2 cut(s)	350, 840
BseGI	GGATG	6 cut(s)	29, 467, 537, 674, 744, 805
BseLI	CCNNNNNNNGG	7 cut(s)	79, 99, 162, 473, 605, 680, 691
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	878
BseNI	ACTGG	3 cut(s)	558, 719, 765
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	4 cut(s)	235, 489, 696, 959
BshFI	GGCC	6 cut(s)	103, 355, 477, 527, 684, 734
BsiHKAI	GWGCWC	2 cut(s)	412, 619
BsiSI	CCGG	3 cut(s)	50, 222, 350
BslI	CCNNNNNNNGG	7 cut(s)	79, 99, 162, 473, 605, 680, 691
BsnI	GGCC	6 cut(s)	103, 355, 477, 527, 684, 734
Bsp119I	TTCGAA	3 cut(s)	575, 782, 816
Bsp1286I	GDGCHC	3 cut(s)	268, 412, 619
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	6 cut(s)	54, 431, 481, 638, 688, 880
Bsp19I	CCATGG	1 cut(s)	840
BspACI	CCGC	3 cut(s)	214, 497, 704
BspANI	GGCC	6 cut(s)	103, 355, 477, 527, 684, 734
BspCNI	CTCAG	1 cut(s)	879
BspLI	GGNNCC	2 cut(s)	348, 354
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	439, 646
BspQI	GCTCTTC	2 cut(s)	456, 663
BspT104I	TTCGAA	3 cut(s)	575, 782, 816
BsrDI	GCAATG	1 cut(s)	216
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	558, 719, 765
BssECI	CCNNGG	2 cut(s)	350, 840
BssMI	GATC	6 cut(s)	54, 431, 481, 638, 688, 880
BssT1I	CCWWGG	1 cut(s)	840
Bst2UI	CCWGG	4 cut(s)	429, 529, 636, 736
Bst6I	CTCTTC	7 cut(s)	456, 548, 563, 663, 755, 770, 804
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	239
BstBI	TTCGAA	3 cut(s)	575, 782, 816
BstC8I	GCNNGC	2 cut(s)	854, 858
BstDEI	CTNAG	5 cut(s)	167, 300, 472, 679, 887
BstDSI	CCRYGG	1 cut(s)	840
BstENI	CCTNNNNNAGG	1 cut(s)	689
BstF5I	GGATG	6 cut(s)	29, 467, 537, 674, 744, 805
BstH2I	RGCGCY	1 cut(s)	953
BstHHI	GCGC	2 cut(s)	213, 952
BstKTI	GATC	6 cut(s)	57, 434, 484, 641, 691, 883
BstMBI	GATC	6 cut(s)	54, 431, 481, 638, 688, 880
BstMWI	GCNNNNNNNGC	4 cut(s)	494, 508, 701, 715
BstNI	CCWGG	4 cut(s)	429, 529, 636, 736
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	5 cut(s)	349, 427, 527, 634, 734
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	4 cut(s)	235, 489, 696, 959
BstV2I	GAAGAC	1 cut(s)	923
BstX2I	RGATCY	2 cut(s)	431, 638
BstYI	RGATCY	2 cut(s)	431, 638
Bsu36I	CCTNAGG	2 cut(s)	472, 679
BsuRI	GGCC	6 cut(s)	103, 355, 477, 527, 684, 734
BtgI	CCRYGG	1 cut(s)	840
BtsCI	GGATG	6 cut(s)	29, 467, 537, 674, 744, 805
BtsIMutI	CAGTG	5 cut(s)	461, 551, 668, 726, 758
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	2 cut(s)	854, 858
CfoI	GCGC	2 cut(s)	213, 952
Cfr13I	GGNCC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	9 cut(s)	16, 146, 158, 261, 446, 485, 600, 653, 841
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	5 cut(s)	167, 300, 472, 679, 887
DpnI	GATC	6 cut(s)	56, 433, 483, 640, 690, 882
DpnII	GATC	6 cut(s)	54, 431, 481, 638, 688, 880
Eam1104I	CTCTTC	7 cut(s)	456, 548, 563, 663, 755, 770, 804
EarI	CTCTTC	7 cut(s)	456, 548, 563, 663, 755, 770, 804
Ecl136II	GAGCTC	2 cut(s)	410, 617
Eco130I	CCWWGG	1 cut(s)	840
Eco147I	AGGCCT	4 cut(s)	477, 527, 684, 734
Eco24I	GRGCYC	2 cut(s)	412, 619
Eco53kI	GAGCTC	2 cut(s)	410, 617
Eco57I	CTGAAG	2 cut(s)	437, 644
Eco81I	CCTNAGG	2 cut(s)	472, 679
EcoICRI	GAGCTC	2 cut(s)	410, 617
EcoNI	CCTNNNNNAGG	1 cut(s)	689
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRII	CCWGG	4 cut(s)	427, 527, 634, 734
EcoT14I	CCWWGG	1 cut(s)	840
EcoT38I	GRGCYC	2 cut(s)	412, 619
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	9 cut(s)	19, 149, 161, 264, 449, 488, 603, 656, 844
FalI	AAGNNNNNCTT	6 cut(s)	569, 601, 776, 808, 810, 842
FatI	CATG	9 cut(s)	15, 145, 157, 260, 445, 484, 599, 652, 840
FauNDI	CATATG	1 cut(s)	289
FblI	GTMKAC	2 cut(s)	581, 788
Fnu4HI	GCNGC	5 cut(s)	214, 249, 503, 710, 948
FokI	GGATG	6 cut(s)	16, 454, 544, 661, 751, 812
FriOI	GRGCYC	2 cut(s)	412, 619
Fsp4HI	GCNGC	5 cut(s)	214, 249, 503, 710, 948
FspBI	CTAG	2 cut(s)	227, 362
GlaI	GCGC	2 cut(s)	212, 951
GluI	GCNGC	5 cut(s)	214, 249, 503, 710, 948
HaeII	RGCGCY	1 cut(s)	953
HaeIII	GGCC	6 cut(s)	103, 355, 477, 527, 684, 734
HapII	CCGG	3 cut(s)	50, 222, 350
HhaI	GCGC	2 cut(s)	213, 952
Hin1II	CATG	9 cut(s)	19, 149, 161, 264, 449, 488, 603, 656, 844
Hin6I	GCGC	2 cut(s)	211, 950
HinP1I	GCGC	2 cut(s)	211, 950
HincII	GTYRAC	3 cut(s)	582, 789, 823
HindII	GTYRAC	3 cut(s)	582, 789, 823
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	7 cut(s)	257, 296, 520, 557, 727, 764, 928
HpaII	CCGG	3 cut(s)	50, 222, 350
HphI	GGTGA	4 cut(s)	434, 641, 875, 917
Hpy166II	GTNNAC	3 cut(s)	582, 789, 823
Hpy188I	TCNGA	4 cut(s)	23, 79, 927, 939
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	3 cut(s)	582, 789, 823
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	3 cut(s)	298, 880, 902
HpyCH4IV	ACGT	5 cut(s)	177, 238, 463, 670, 909
HpyCH4V	TGCA	3 cut(s)	161, 251, 603
HpyF10VI	GCNNNNNNNGC	4 cut(s)	494, 508, 701, 715
HpyF3I	CTNAG	5 cut(s)	167, 300, 472, 679, 887
HpySE526I	ACGT	5 cut(s)	177, 238, 463, 670, 909
Hsp92II	CATG	9 cut(s)	19, 149, 161, 264, 449, 488, 603, 656, 844
HspAI	GCGC	2 cut(s)	211, 950
Kzo9I	GATC	6 cut(s)	54, 431, 481, 638, 688, 880
LguI	GCTCTTC	2 cut(s)	456, 663
LmnI	GCTCC	2 cut(s)	158, 346
Lsp1109I	GCAGC	4 cut(s)	235, 489, 696, 959
LweI	GCATC	2 cut(s)	193, 951
MaeI	CTAG	2 cut(s)	227, 362
MaeII	ACGT	5 cut(s)	177, 238, 463, 670, 909
MaeIII	GTNAC	4 cut(s)	307, 549, 756, 905
MalI	GATC	6 cut(s)	56, 433, 483, 640, 690, 882
MboI	GATC	6 cut(s)	54, 431, 481, 638, 688, 880
MboII	GAAGA	8 cut(s)	443, 535, 580, 650, 742, 787, 821, 923
MflI	RGATCY	2 cut(s)	431, 638
MhlI	GDGCHC	3 cut(s)	268, 412, 619
MluCI	AATT	6 cut(s)	62, 97, 329, 377, 402, 609
MlyI	GAGTC	4 cut(s)	266, 551, 758, 937
MmeI	TCCRAC	1 cut(s)	962
MnlI	CCTC	7 cut(s)	73, 366, 379, 488, 551, 695, 758
MseI	TTAA	2 cut(s)	192, 967
MspI	CCGG	3 cut(s)	50, 222, 350
MspR9I	CCNGG	5 cut(s)	351, 429, 529, 636, 736
MvaI	CCWGG	4 cut(s)	429, 529, 636, 736
MwoI	GCNNNNNNNGC	4 cut(s)	494, 508, 701, 715
NciI	CCSGG	1 cut(s)	351
NcoI	CCATGG	1 cut(s)	840
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	6 cut(s)	54, 431, 481, 638, 688, 880
NlaIII	CATG	9 cut(s)	19, 149, 161, 264, 449, 488, 603, 656, 844
NlaIV	GGNNCC	2 cut(s)	348, 354
NmuCI	GTSAC	3 cut(s)	549, 756, 905
NspI	RCATGY	1 cut(s)	19
NspV	TTCGAA	3 cut(s)	575, 782, 816
PceI	AGGCCT	4 cut(s)	477, 527, 684, 734
PciI	ACATGT	1 cut(s)	15
PciSI	GCTCTTC	2 cut(s)	456, 663
PfeI	GAWTC	3 cut(s)	296, 520, 727
PflFI	GACNNNGTC	1 cut(s)	911
PfoI	TCCNGGA	2 cut(s)	427, 634
PkrI	GCNGC	5 cut(s)	215, 250, 504, 711, 949
PleI	GAGTC	4 cut(s)	265, 551, 758, 936
PpsI	GAGTC	4 cut(s)	265, 551, 758, 936
Ppu21I	YACGTR	1 cut(s)	239
PscI	ACATGT	1 cut(s)	15
Psp124BI	GAGCTC	2 cut(s)	412, 619
Psp6I	CCWGG	4 cut(s)	427, 527, 634, 734
PspGI	CCWGG	4 cut(s)	427, 527, 634, 734
PspN4I	GGNNCC	2 cut(s)	348, 354
PspPI	GGNCC	1 cut(s)	353
PsuI	RGATCY	2 cut(s)	431, 638
PsyI	GACNNNGTC	1 cut(s)	911
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	2 cut(s)	412, 619
SalI	GTCGAC	2 cut(s)	580, 787
SapI	GCTCTTC	2 cut(s)	456, 663
SaqAI	TTAA	2 cut(s)	192, 967
SatI	GCNGC	5 cut(s)	214, 249, 503, 710, 948
Sau3AI	GATC	6 cut(s)	54, 431, 481, 638, 688, 880
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	4 cut(s)	266, 551, 758, 937
ScrFI	CCNGG	5 cut(s)	351, 429, 529, 636, 736
SduI	GDGCHC	3 cut(s)	268, 412, 619
SfaNI	GCATC	2 cut(s)	193, 951
SfuI	TTCGAA	3 cut(s)	575, 782, 816
SpeI	ACTAGT	1 cut(s)	226
Sse9I	AATT	6 cut(s)	62, 97, 329, 377, 402, 609
SseBI	AGGCCT	4 cut(s)	477, 527, 684, 734
SsiI	CCGC	3 cut(s)	214, 497, 704
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	2 cut(s)	227, 362
SstI	GAGCTC	2 cut(s)	412, 619
StuI	AGGCCT	4 cut(s)	477, 527, 684, 734
StyD4I	CCNGG	5 cut(s)	349, 427, 527, 634, 734
StyI	CCWWGG	1 cut(s)	840
TaiI	ACGT	5 cut(s)	180, 241, 466, 673, 912
TasI	AATT	6 cut(s)	62, 97, 329, 377, 402, 609
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	3 cut(s)	296, 520, 727
Tru1I	TTAA	2 cut(s)	192, 967
Tru9I	TTAA	2 cut(s)	192, 967
TscAI	CASTG	5 cut(s)	461, 558, 668, 726, 765
TseFI	GTSAC	3 cut(s)	549, 756, 905
TseI	GCWGC	4 cut(s)	248, 502, 709, 947
Tsp45I	GTSAC	3 cut(s)	549, 756, 905
TspDTI	ATGAA	5 cut(s)	134, 309, 581, 788, 822
TspRI	CASTG	5 cut(s)	461, 558, 668, 726, 765
Tth111I	GACNNNGTC	1 cut(s)	911
XagI	CCTNNNNNAGG	1 cut(s)	689
XceI	RCATGY	1 cut(s)	19
XmiI	GTMKAC	2 cut(s)	581, 788
XspI	CTAG	2 cut(s)	227, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.