Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004857

Physical Location & Seq

Genomic Coordinates Reverse (-)

3284446 .. 3285086

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0020000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAACAAAAACCCAGCAACCAACCGAGGATGGAGGAACTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTAGAATCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGTAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGTGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

162

Amino Acids

17.81

Weight (kDa)

6.91

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15580 FvH4_5g15590 FvH4_5g15600 FvH4_5g15640 FvH4_5g15650
malus_domestica	MD06G1187100.v1.1 MD06G1187200.v1.1 MD14G1193400.v1.1 MD14G1193600.v1.1 MD17G1187100.v1.1
prunus_persica	Prupe.5G185400_v2.0.a1 Prupe.5G185400_v2.0.a1
pyrus_communis	pycom03g15850
rosa_chinensis	RchiOBHm_Chr7g0180481
rosa_laevigata	RLG00000005261 RLG00000005262 RLG00000005263
rosa_multiflora	Rmu_sc0003322.1_g000007 Rmu_sc0005690.1_g000006 Rmu_sc0006136.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272840
rosa_rugosa	Rorug01G0019900 Rorug01G0020000 Rorug06G0433100
rosa_samantha	Rh7AG034200 Rh7BG034100 Rh7CG035900 Rh7CG036000 Rh7DG034600 Rh7DG034700
rosa_wichuraiana	Rw7G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	182
AciI	CCGC	3 cut(s)	112, 405, 484
AclWI	GGATC	2 cut(s)	210, 319
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	2 cut(s)	50, 184
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	67, 332
AleI	CACNNNNGTG	1 cut(s)	414
AluBI	AGCT	3 cut(s)	263, 439, 464
AluI	AGCT	3 cut(s)	263, 439, 464
Alw21I	GWGCWC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	210, 319
Ama87I	CYCGRG	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	336
Asp718I	GGTACC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	182, 371
AvaI	CYCGRG	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	123
AxyI	CCTNAGG	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	147
BaeI	ACNNNNGTAYC	2 cut(s)	166, 199
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	2 cut(s)	103, 441
BbsI	GAAGAC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	441
BccI	CCATC	3 cut(s)	25, 283, 389
BceAI	ACGGC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	484
BlpI	GCTNAGC	1 cut(s)	440
BlsI	GCNGC	1 cut(s)	485
Bme18I	GGWCC	1 cut(s)	123
BmeT110I	CYCGRG	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	184, 482
BpiI	GAAGAC	1 cut(s)	389
Bpu1102I	GCTNAGC	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse21I	CCTNAGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	36, 139
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	189, 454
BseSI	GKGCMC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	356
BsoBI	CYCGRG	1 cut(s)	102
Bsp1286I	GDGCHC	3 cut(s)	103, 147, 441
Bsp143I	GATC	4 cut(s)	57, 155, 202, 311
Bsp1720I	GCTNAGC	1 cut(s)	440
BspACI	CCGC	3 cut(s)	112, 405, 484
BspCNI	CTCAG	2 cut(s)	190, 453
BspLI	GGNNCC	2 cut(s)	184, 482
BspPI	GGATC	2 cut(s)	210, 319
BspT107I	GGYRCC	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	4 cut(s)	57, 155, 202, 311
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	113
BstDEI	CTNAG	3 cut(s)	198, 217, 440
BstF5I	GGATG	2 cut(s)	36, 139
BstKTI	GATC	4 cut(s)	60, 158, 205, 314
BstMBI	GATC	4 cut(s)	57, 155, 202, 311
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstSLI	GKGCMC	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	389
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
Bsu36I	CCTNAGG	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	36, 139
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	49, 183
CviAII	CATG	6 cut(s)	140, 148, 322, 352, 356, 379
CviJI	RGCY	8 cut(s)	101, 163, 263, 420, 439, 444, 464, 483
CviKI_1	RGCY	8 cut(s)	101, 163, 263, 420, 439, 444, 464, 483
CviQI	GTAC	2 cut(s)	49, 183
DdeI	CTNAG	3 cut(s)	198, 217, 440
DpnI	GATC	4 cut(s)	59, 157, 204, 313
DpnII	GATC	4 cut(s)	57, 155, 202, 311
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	439
Eco24I	GRGCYC	2 cut(s)	103, 441
Eco47I	GGWCC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	102
EcoICRI	GAGCTC	1 cut(s)	439
EcoT22I	ATGCAT	1 cut(s)	357
EcoT38I	GRGCYC	2 cut(s)	103, 441
FaeI	CATG	6 cut(s)	143, 151, 325, 355, 359, 382
FatI	CATG	6 cut(s)	139, 147, 321, 351, 355, 378
Fnu4HI	GCNGC	1 cut(s)	484
FokI	GGATG	2 cut(s)	43, 146
FriOI	GRGCYC	2 cut(s)	103, 441
Fsp4HI	GCNGC	1 cut(s)	484
GluI	GCNGC	1 cut(s)	484
GsaI	CCCAGC	1 cut(s)	18
Hin1II	CATG	6 cut(s)	143, 151, 325, 355, 359, 382
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	2 cut(s)	182, 371
Hpy166II	GTNNAC	2 cut(s)	91, 126
Hpy188I	TCNGA	2 cut(s)	133, 394
Hpy188III	TCNNGA	4 cut(s)	67, 88, 104, 478
Hpy8I	GTNNAC	2 cut(s)	91, 126
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	151, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	3 cut(s)	198, 217, 440
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	6 cut(s)	143, 151, 325, 355, 359, 382
KpnI	GGTACC	1 cut(s)	186
Kzo9I	GATC	4 cut(s)	57, 155, 202, 311
LmnI	GCTCC	1 cut(s)	480
LpnPI	CCDG	7 cut(s)	28, 144, 210, 249, 450, 463, 463
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	374, 407
MalI	GATC	4 cut(s)	59, 157, 204, 313
MboI	GATC	4 cut(s)	57, 155, 202, 311
MboII	GAAGA	5 cut(s)	127, 130, 216, 249, 394
MfeI	CAATTG	1 cut(s)	187
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	3 cut(s)	103, 147, 441
MluCI	AATT	1 cut(s)	187
MnlI	CCTC	8 cut(s)	21, 28, 114, 193, 351, 355, 392, 448
Mph1103I	ATGCAT	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	2 cut(s)	213, 279
MslI	CAYNNNNRTG	1 cut(s)	414
MspA1I	CMGCKG	2 cut(s)	263, 486
MunI	CAATTG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	4 cut(s)	57, 155, 202, 311
NlaIII	CATG	6 cut(s)	143, 151, 325, 355, 359, 382
NlaIV	GGNNCC	2 cut(s)	184, 482
NmuCI	GTSAC	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	357
OliI	CACNNNNGTG	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	485
Psp124BI	GAGCTC	1 cut(s)	441
PspFI	CCCAGC	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	184, 482
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	2 cut(s)	50, 184
RsaNI	GTAC	2 cut(s)	49, 183
RseI	CAYNNNNRTG	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	441
SaqAI	TTAA	2 cut(s)	213, 279
SatI	GCNGC	1 cut(s)	484
Sau3AI	GATC	4 cut(s)	57, 155, 202, 311
Sau96I	GGNCC	1 cut(s)	123
SduI	GDGCHC	3 cut(s)	103, 147, 441
SetI	ASST	7 cut(s)	75, 125, 199, 265, 403, 441, 466
SinI	GGWCC	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	3 cut(s)	112, 405, 484
SstI	GAGCTC	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	413
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	187
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	213, 279
Tru9I	TTAA	2 cut(s)	213, 279
TseFI	GTSAC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	128, 332, 395
VpaK11BI	GGWCC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.