MD17G1187100.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
22375211 .. 22376089
879 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1187100.v1.1.491

Sequence Viewer

Length: 879 bp
ATGAGAGTTCTTCCCCCTCTTTTGGTGAGGGTTTCCATCTTGATTGACAACTTCGACACTGACTCTAGCTTCGACTGGAGTCCGTTGCCACTTTTCCTCTTCTTCTGTTTTCTCCTCCTTTCCCCTTCTATGTTCTTCTCCTCGTTGCCACTGCTCCTAGCTATGGCTGGGGTTGGTGGTAGCCTCTTGCTCCTCTGGTTCTCGTTTTCTTTTCTTTTGTTCTTGCTTGTTTTTTCCTCTACCTTTTTGTTGTTTCCACCTTCTCCTCTTCTCTCTGGTGCCTCTGATTTCATTTCACCAGCTCCCCCTTCTTCCTTTCCTTTTCCCTCCACCTCTTTTCTTTCCCATCCTCCACACCTTATCCTTTCCACTTGGCTCTCTCCTCCATTGGTCTCACACTTTAGATCGGGTTCCACAAATCACTATTGTGAACCTGAATCTTCGCGATTTCCATTTAGGATGAAGATGTGTAGAGCTTCGTATTTTCTCGATGCTTGGGTGTTCTCACCACCTTCTTGCCTTATCTTGGCCTTGTTACCGTTGTCGTTCGTGGGGTTTTTCTCACGAGCTTCCCTTGATTTGTGGTGCCTATCTTCGATGTGTTCTTTGGAGGTTGTTGCAGTCTTCTTTTTATGCCTTTTGGGGGCTCGATTTAGCTTGATTTCAGGCCACTGGTTTGAGTTTGGTGGTTCTTATGGCAGCAGCAGCAGAGGTTGCAGTGGTAGAGGATGCAGGCTCTTCGGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTTTCTGTTGGGCTTGGTTGTTGTACTTTGGAGGTCCATACTTTGTGGTTGTGTTTGTTTTGTCTGTGGGCCTCTCTCTTGTAAATATGTGTTGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

32.78

Weight (kDa)

7.5

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 278, 585
AccII CGCG 1 cut(s) 445
AfaI GTAC 1 cut(s) 803
AfiI CCNNNNNNNGG 4 cut(s) 22, 163, 526, 643
AleI CACNNNNGTG 1 cut(s) 426
AluBI AGCT 6 cut(s) 69, 161, 302, 476, 569, 657
AluI AGCT 6 cut(s) 69, 161, 302, 476, 569, 657
Alw26I GTCTC 1 cut(s) 397
AoxI GGCC 3 cut(s) 528, 667, 847
ApeKI GCWGC 3 cut(s) 699, 702, 705
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspS9I GGNCC 2 cut(s) 812, 847
AsuHPI GGTGA 3 cut(s) 37, 288, 498
AvaII GGWCC 1 cut(s) 812
BanI GGYRCC 2 cut(s) 278, 585
BanII GRGCYC 1 cut(s) 649
BauI CACGAG 1 cut(s) 564
BbsI GAAGAC 1 cut(s) 616
BbvI GCAGC 3 cut(s) 711, 714, 717
BccI CCATC 2 cut(s) 44, 354
BcgI CGANNNNNNTGC 2 cut(s) 721, 755
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 2 cut(s) 66, 158
BisI GCNGC 3 cut(s) 700, 703, 706
BlsI GCNGC 3 cut(s) 701, 704, 707
Bme18I GGWCC 1 cut(s) 812
BmgT120I GGNCC 2 cut(s) 812, 847
BmiI GGNNCC 3 cut(s) 280, 412, 587
BmsI GCATC 2 cut(s) 481, 719
BoxI GACNNNNGTC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 616
BpmI CTGGAG 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 397
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 163, 526, 643
Bse1I ACTGG 2 cut(s) 80, 677
BseGI GGATG 3 cut(s) 346, 465, 734
BseLI CCNNNNNNNGG 4 cut(s) 22, 163, 526, 643
BseNI ACTGG 2 cut(s) 80, 677
BseRI GAGGAG 5 cut(s) 104, 130, 182, 255, 372
BseXI GCAGC 3 cut(s) 711, 714, 717
BseYI CCCAGC 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 445
BshFI GGCC 3 cut(s) 530, 669, 849
BshNI GGYRCC 2 cut(s) 278, 585
BslI CCNNNNNNNGG 4 cut(s) 22, 163, 526, 643
BsmAI GTCTC 1 cut(s) 397
BsnI GGCC 3 cut(s) 530, 669, 849
Bso31I GGTCTC 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 649
Bsp143I GATC 1 cut(s) 404
Bsp68I TCGCGA 1 cut(s) 445
BspANI GGCC 3 cut(s) 530, 669, 849
BspFNI CGCG 1 cut(s) 445
BspLI GGNNCC 3 cut(s) 280, 412, 587
BspQI GCTCTTC 1 cut(s) 743
BspT107I GGYRCC 2 cut(s) 278, 585
BspTNI GGTCTC 1 cut(s) 397
BsrI ACTGG 2 cut(s) 80, 677
BssMI GATC 1 cut(s) 404
BssSI CACGAG 1 cut(s) 564
Bst2BI CACGAG 1 cut(s) 564
Bst4CI ACNGT 1 cut(s) 540
Bst6I CTCTTC 3 cut(s) 104, 273, 743
BstAPI GCANNNNNTGC 1 cut(s) 714
BstC8I GCNNGC 1 cut(s) 734
BstF5I GGATG 3 cut(s) 346, 465, 734
BstFNI CGCG 1 cut(s) 445
BstKTI GATC 1 cut(s) 407
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 1 cut(s) 404
BstMWI GCNNNNNNNGC 3 cut(s) 705, 714, 742
BstPAI GACNNNNGTC 1 cut(s) 78
BstUI CGCG 1 cut(s) 445
BstV1I GCAGC 3 cut(s) 711, 714, 717
BstV2I GAAGAC 1 cut(s) 616
BsuRI GGCC 3 cut(s) 530, 669, 849
BtsCI GGATG 3 cut(s) 346, 465, 734
BtsI GCAGTG 2 cut(s) 149, 724
BtsIMutI CAGTG 4 cut(s) 57, 149, 670, 724
BtuMI TCGCGA 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 734
Cfr13I GGNCC 2 cut(s) 812, 847
Csp6I GTAC 1 cut(s) 802
CviQI GTAC 1 cut(s) 802
DpnI GATC 1 cut(s) 406
DpnII GATC 1 cut(s) 404
Eam1104I CTCTTC 3 cut(s) 104, 273, 743
EarI CTCTTC 3 cut(s) 104, 273, 743
Eco24I GRGCYC 1 cut(s) 649
Eco31I GGTCTC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 812
EcoT38I GRGCYC 1 cut(s) 649
FaiI YATR 7 cut(s) 131, 164, 634, 696, 817, 866, 877
Fnu4HI GCNGC 3 cut(s) 700, 703, 706
FokI GGATG 3 cut(s) 333, 472, 741
FriOI GRGCYC 1 cut(s) 649
Fsp4HI GCNGC 3 cut(s) 700, 703, 706
FspBI CTAG 2 cut(s) 66, 158
GluI GCNGC 3 cut(s) 700, 703, 706
GsaI CCCAGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 97
HaeIII GGCC 3 cut(s) 530, 669, 849
HinfI GANTC 3 cut(s) 62, 79, 437
HphI GGTGA 3 cut(s) 37, 288, 498
Hpy166II GTNNAC 1 cut(s) 431
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 4 cut(s) 40, 444, 488, 564
Hpy8I GTNNAC 1 cut(s) 431
HpyAV CCTTC 4 cut(s) 135, 270, 318, 522
HpyCH4III ACNGT 1 cut(s) 540
HpyCH4V TGCA 3 cut(s) 620, 717, 732
HpyF10VI GCNNNNNNNGC 3 cut(s) 705, 714, 742
Kzo9I GATC 1 cut(s) 404
LguI GCTCTTC 1 cut(s) 743
LmnI GCTCC 3 cut(s) 159, 195, 307
LpnPI CCDG 9 cut(s) 61, 153, 181, 261, 312, 447, 651, 658, 718
Lsp1109I GCAGC 3 cut(s) 711, 714, 717
LweI GCATC 2 cut(s) 481, 719
MaeI CTAG 2 cut(s) 66, 158
MaeIII GTNAC 1 cut(s) 534
MalI GATC 1 cut(s) 406
MboI GATC 1 cut(s) 404
MhlI GDGCHC 1 cut(s) 649
MlyI GAGTC 2 cut(s) 56, 88
MslI CAYNNNNRTG 1 cut(s) 426
MvnI CGCG 1 cut(s) 445
MwoI GCNNNNNNNGC 3 cut(s) 705, 714, 742
NdeII GATC 1 cut(s) 404
NlaIV GGNNCC 3 cut(s) 280, 412, 587
NruI TCGCGA 1 cut(s) 445
OliI CACNNNNGTG 1 cut(s) 426
PciSI GCTCTTC 1 cut(s) 743
PfeI GAWTC 1 cut(s) 437
PkrI GCNGC 3 cut(s) 701, 704, 707
PleI GAGTC 2 cut(s) 56, 87
PpsI GAGTC 2 cut(s) 56, 87
PshAI GACNNNNGTC 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 167
PspN4I GGNNCC 3 cut(s) 280, 412, 587
PspPI GGNCC 2 cut(s) 812, 847
RruI TCGCGA 1 cut(s) 445
RsaI GTAC 1 cut(s) 803
RsaNI GTAC 1 cut(s) 802
RseI CAYNNNNRTG 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 743
SatI GCNGC 3 cut(s) 700, 703, 706
Sau3AI GATC 1 cut(s) 404
Sau96I GGNCC 2 cut(s) 812, 847
SchI GAGTC 2 cut(s) 56, 88
SduI GDGCHC 1 cut(s) 649
SfaNI GCATC 2 cut(s) 481, 719
SinI GGWCC 1 cut(s) 812
SmiMI CAYNNNNRTG 1 cut(s) 426
SspMI CTAG 2 cut(s) 66, 158
TaaI ACNGT 1 cut(s) 540
TaqI TCGA 5 cut(s) 54, 72, 489, 596, 649
TatI WGTACW 1 cut(s) 801
TfiI GAWTC 1 cut(s) 437
TscAI CASTG 4 cut(s) 64, 156, 677, 724
TseI GCWGC 3 cut(s) 699, 702, 705
TspDTI ATGAA 3 cut(s) 280, 476, 864
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 4 cut(s) 64, 156, 677, 724
VpaK11BI GGWCC 1 cut(s) 812
XspI CTAG 2 cut(s) 66, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.