Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004857

Physical Location & Seq

Genomic Coordinates Forward (+)

2459382 .. 2463077

Gene Structure 3696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG036000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAGACTTCATTGGGGTTATGGGTGGCTTTGGTAGTAGGAGGTTTGCCACTTTTGCGGTTGCTATTATGGTGGTGGAATGAGTTTTGGTATGTGCTTCCTCTTAAATTGCACGGGTCGTCAACCGCCGCCAAATTGCCTCCGGGTCATTTGGGGTTTCCATTTCTTGGTGAAATGCTCACTTTTTTGTGGTATTTCAAAATACTTCGACGCCCCGATGAGTTCATCAATGCAAAGCGAGCTAAGTACGGTGATGGAGTAGGAATGTATAGAACGCACCTCTTCGGCTCGCCGTCGATCATAACATGTTTCCCGGCAGTGAACAAATTTATATTCCAATCGGAGGACACCTTCAAACTAAACTGGCCTGACGTTGATATTGTAGGTTCTAGTTCCTTGGTAGCAGTTCAAGGAAGCTGCCATGCAAGGCTTAGAAGCTATGTCGTAAATGTCATCAACAAACCCGACGCTCTCCGCCGCATTGCGCAACTAGTTCAGCCACGAATGTTGGCTGCATTTAGTCATGGGGTCTCAAAGGTAGAATCAAAGCATTTGACGAAGCTAAGAAGATTTGGGGGTGTTGACATGGTCAGAGAAGGAGGAGGAGGGAAGGCGTCGAAGTGTAGGGAGGTGCGGCGCGTGGATAGGCGAGGAGTGGAGGAGAGCAGAGTAGGAGGAGGAGAGAGAGAAGGCGATGAGGATTTGGGATCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

238

Amino Acids

26.69

Weight (kDa)

9.64

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15580 FvH4_5g15590 FvH4_5g15600 FvH4_5g15640 FvH4_5g15650
malus_domestica	MD06G1187100.v1.1 MD06G1187200.v1.1 MD14G1193400.v1.1 MD14G1193600.v1.1 MD17G1187100.v1.1
prunus_persica	Prupe.5G185400_v2.0.a1 Prupe.5G185400_v2.0.a1
pyrus_communis	pycom03g15850
rosa_chinensis	RchiOBHm_Chr7g0180481
rosa_laevigata	RLG00000005261 RLG00000005262 RLG00000005263
rosa_multiflora	Rmu_sc0003322.1_g000007 Rmu_sc0005690.1_g000006 Rmu_sc0006136.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272840
rosa_rugosa	Rorug01G0019900 Rorug01G0020000 Rorug06G0433100
rosa_samantha	Rh7AG034200 Rh7BG034100 Rh7CG035900 Rh7CG036000 Rh7DG034600 Rh7DG034700
rosa_wichuraiana	Rw7G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	486
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccII	CGCG	1 cut(s)	639
AciI	CCGC	6 cut(s)	58, 126, 129, 475, 478, 634
AclWI	GGATC	1 cut(s)	715
AcsI	RAATTY	1 cut(s)	326
AcyI	GRCGYC	2 cut(s)	211, 614
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	167, 343
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	3 cut(s)	199, 355, 410
AhlI	ACTAGT	1 cut(s)	490
AluBI	AGCT	4 cut(s)	242, 417, 438, 562
AluI	AGCT	4 cut(s)	242, 417, 438, 562
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	1 cut(s)	715
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	2 cut(s)	417, 512
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	487, 639
AsuC2I	CCSGG	2 cut(s)	144, 314
AsuHPI	GGTGA	2 cut(s)	182, 263
BbvI	GCAGC	2 cut(s)	404, 499
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	277
BcnI	CCSGG	2 cut(s)	144, 314
BcoDI	GTCTC	1 cut(s)	535
BcuI	ACTAGT	1 cut(s)	490
BfaI	CTAG	2 cut(s)	390, 491
BisI	GCNGC	5 cut(s)	129, 418, 478, 513, 635
BlsI	GCNGC	5 cut(s)	130, 419, 479, 514, 636
Bme1390I	CCNGG	2 cut(s)	144, 314
BmrFI	CCNGG	2 cut(s)	144, 314
BpuMI	CCSGG	2 cut(s)	144, 314
BsaHI	GRCGYC	2 cut(s)	211, 614
BsaI	GGTCTC	1 cut(s)	535
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 343
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	480
BseDI	CCNNGG	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	167, 343
BseMI	GCAATG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	6 cut(s)	615, 618, 666, 674, 690, 693
BseXI	GCAGC	2 cut(s)	404, 499
Bsh1236I	CGCG	1 cut(s)	639
BshFI	GGCC	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	143, 314
BslI	CCNNNNNNNGG	2 cut(s)	167, 343
BsmAI	GTCTC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	367
Bso31I	GGTCTC	1 cut(s)	535
Bsp143I	GATC	2 cut(s)	297, 707
BspACI	CCGC	6 cut(s)	58, 126, 129, 475, 478, 634
BspANI	GGCC	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	639
BspPI	GGATC	1 cut(s)	715
BspTNI	GGTCTC	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	2 cut(s)	297, 707
BssNI	GRCGYC	2 cut(s)	211, 614
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	287
BstACI	GRCGYC	2 cut(s)	211, 614
BstC8I	GCNNGC	2 cut(s)	240, 290
BstDEI	CTNAG	3 cut(s)	243, 431, 563
BstFNI	CGCG	1 cut(s)	639
BstHHI	GCGC	2 cut(s)	487, 639
BstKTI	GATC	2 cut(s)	300, 710
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	2 cut(s)	297, 707
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 239
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	2 cut(s)	142, 312
BstUI	CGCG	1 cut(s)	639
BstV1I	GCAGC	2 cut(s)	404, 499
BsuRI	GGCC	1 cut(s)	367
BtgZI	GCGATG	1 cut(s)	708
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	240, 290
CfoI	GCGC	2 cut(s)	487, 639
CseI	GACGC	3 cut(s)	219, 476, 603
Csp6I	GTAC	1 cut(s)	247
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	4 cut(s)	306, 422, 524, 586
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	3 cut(s)	243, 431, 563
DpnI	GATC	2 cut(s)	299, 709
DpnII	GATC	2 cut(s)	297, 707
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
EciI	GGCGGA	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	396
Eco31I	GGTCTC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	4 cut(s)	309, 425, 527, 589
FatI	CATG	4 cut(s)	305, 421, 523, 585
Fnu4HI	GCNGC	5 cut(s)	129, 418, 478, 513, 635
Fsp4HI	GCNGC	5 cut(s)	129, 418, 478, 513, 635
FspBI	CTAG	2 cut(s)	390, 491
FspI	TGCGCA	1 cut(s)	486
GlaI	GCGC	2 cut(s)	486, 638
GluI	GCNGC	5 cut(s)	129, 418, 478, 513, 635
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	2 cut(s)	143, 314
HgaI	GACGC	3 cut(s)	219, 476, 603
HhaI	GCGC	2 cut(s)	487, 639
Hin1I	GRCGYC	2 cut(s)	211, 614
Hin1II	CATG	4 cut(s)	309, 425, 527, 589
Hin6I	GCGC	2 cut(s)	485, 637
HinP1I	GCGC	2 cut(s)	485, 637
HincII	GTYRAC	2 cut(s)	123, 583
HindII	GTYRAC	2 cut(s)	123, 583
HinfI	GANTC	1 cut(s)	542
HpaII	CCGG	2 cut(s)	143, 314
HphI	GGTGA	2 cut(s)	182, 263
Hpy166II	GTNNAC	3 cut(s)	123, 322, 583
Hpy188I	TCNGA	3 cut(s)	343, 593, 712
Hpy8I	GTNNAC	3 cut(s)	123, 322, 583
Hpy99I	CGWCG	4 cut(s)	213, 298, 470, 619
HpyAV	CCTTC	4 cut(s)	361, 590, 604, 683
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	4 cut(s)	112, 233, 425, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 239
HpyF3I	CTNAG	3 cut(s)	243, 431, 563
HpySE526I	ACGT	1 cut(s)	372
Hsp92I	GRCGYC	2 cut(s)	211, 614
Hsp92II	CATG	4 cut(s)	309, 425, 527, 589
HspAI	GCGC	2 cut(s)	485, 637
Kzo9I	GATC	2 cut(s)	297, 707
LpnPI	CCDG	4 cut(s)	156, 327, 349, 381
Lsp1109I	GCAGC	2 cut(s)	404, 499
MaeI	CTAG	2 cut(s)	390, 491
MaeII	ACGT	1 cut(s)	372
MalI	GATC	2 cut(s)	299, 709
MboI	GATC	2 cut(s)	297, 707
MboII	GAAGA	2 cut(s)	274, 579
MluCI	AATT	3 cut(s)	107, 134, 326
MseI	TTAA	1 cut(s)	105
MspI	CCGG	2 cut(s)	143, 314
MspR9I	CCNGG	2 cut(s)	144, 314
MvnI	CGCG	1 cut(s)	639
MwoI	GCNNNNNNNGC	2 cut(s)	55, 239
NciI	CCSGG	2 cut(s)	144, 314
NdeII	GATC	2 cut(s)	297, 707
NlaIII	CATG	4 cut(s)	309, 425, 527, 589
NsbI	TGCGCA	1 cut(s)	486
NspI	RCATGY	1 cut(s)	309
PciI	ACATGT	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	542
PflFI	GACNNNGTC	1 cut(s)	587
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	130, 419, 479, 514, 636
PscI	ACATGT	1 cut(s)	305
PsyI	GACNNNGTC	1 cut(s)	587
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	5 cut(s)	129, 418, 478, 513, 635
Sau3AI	GATC	2 cut(s)	297, 707
ScrFI	CCNGG	2 cut(s)	144, 314
SpeI	ACTAGT	1 cut(s)	490
Sse9I	AATT	3 cut(s)	107, 134, 326
SsiI	CCGC	6 cut(s)	58, 126, 129, 475, 478, 634
SspMI	CTAG	2 cut(s)	390, 491
StyD4I	CCNGG	2 cut(s)	142, 312
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	3 cut(s)	208, 296, 617
TasI	AATT	3 cut(s)	107, 134, 326
TauI	GCSGC	3 cut(s)	131, 480, 637
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	2 cut(s)	417, 512
TspDTI	ATGAA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	324
Tth111I	GACNNNGTC	1 cut(s)	587
Van91I	CCANNNNNTGG	1 cut(s)	167
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	309
XspI	CTAG	2 cut(s)	390, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.