Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001740

Physical Location & Seq

Genomic Coordinates Reverse (-)

11344128 .. 11348267

Gene Structure 4140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19520.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCAGAAGGTCTGAAGCTGCCTATCATAGACTTGTCCTCACCGGATCGGAACTCCTCCGCCAGTTCAATCCGTCAGGCTTGCATAGATTGTGGTTTCTTTTACTTGGTGAATCATGGTGTTGAGGAAGAGTTACTGGGCCAAGTGTTTGATCAGAGCAGCAAGTTTTTTTCACTTCCTTTGAAAGATAAGTCCAAATTGACGCGCAAACATCACAGAGGCTACACAGCGCTCTTTGCTGAGAATCTTGACCCCACTTCCAGCTCCAAAGGTGATTCAAAAGAGAGTTTTTACATTGGCCCTTTAGAAGACGCAACTCAAGATAAGTTGAATCAATGGCCTTCAGAAGATATCCTTCCATCCTGGAGACCTACAATGGAAACTTACTATAAAAAAGTTCTTTCTGCTGGGAAAAGATTAGTATCTCTGATTTCCCTGGCTTTGAACCTGGATGAGGACTTTTTTGAGAAAGTGGGGGGTCTGAATAAACACACGGCATTTCTTCGCCTTTTGCACTATCCAGGTGAACGGGGATCATCTGATGAAGAAGTACTTGGTGCTTCTGCTCATTCAGATTATGGGATGGTCACACTCCTCATATCCAATGGTGTCCCAGGACTTCAGGTTTGTAGGGATAAATTTAAGCAACCACGGGTTTGGGAAGATGTTCCTCACATAGATAGAGCATTCATTGTTAACATTGGGGATATGATGGAGAGGTGGACTAATTGTTTGTTCCAGTCAACGGTGCACAGAGTTATACCAGCAGGACAAGAACGCTACTCTATGGCTTTCTTTTTAGACCCCAATGAAGACTCTGTGGTAGAATGCCTCACAAGTTGTTGCAATGAATCATTGCCGCCAAGTTGTCAGGGTCTATGGGTATCACTCTATTGTGAACTTCTCCTTGCAAAAATGGTTCAGTGGGGAATGGGGATGGGTACCTTACTACTCCCGCATAGAATACATAATGGGTGTGTGTGTGTGTGTGGTCTCACTTATACCAAAATTGGGAATATGAAAGTCCAGCATGCTTCCGTCTCTGGAGTCCTCATCAGCCATTCCATTAAGACAGGCCCAATAGCTCTGTGTGTGTGTGTGTGTGTTCTGCGTGTGGTCTCACTTATACCAAAATATGAAAGTCCAGCATGCTTCCGTCTCTGGAGTCCTCATCAGCCATTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

396

Amino Acids

44.12

Weight (kDa)

6.39

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	7 - 116	4.7e-31	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	168 - 269	8.9e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16770
fragaria_vesca	FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520
malus_domestica	MD00G1169400.v1.1 MD00G1169500.v1.1 MD04G1060700.v1.1 MD04G1060800.v1.1 MD11G1277300.v1.1
prunus_persica	Prupe.5G064700_v2.0.a1
pyrus_communis	pycom04g05460 pycom04g05470
rosa_chinensis	RchiOBHm_Chr7g0204121 RchiOBHm_Chr7g0204131
rosa_laevigata	RLG00000003486 RLG00000003488
rosa_multiflora	Rmu_sc0001311.1_g000016 Rmu_sc0001311.1_g000018
rosa_roxburghii	Rroxscaffold_3G00253320 Rroxscaffold_3G00253340
rosa_rugosa	Rorug07G0080800 Rorug07G0080900 Rorug07G0081000
rosa_samantha	Rh7AG210800 Rh7BG209300 Rh7BG209500 Rh7CG223200 Rh7CG223400 Rh7DG217500 Rh7DG217700
rosa_wichuraiana	Rw7G018340 Rw7G018350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	941
AccB1I	GGYRCC	1 cut(s)	941
AccII	CGCG	1 cut(s)	205
AciI	CCGC	3 cut(s)	60, 860, 956
AclWI	GGATC	2 cut(s)	54, 541
AcsI	RAATTY	1 cut(s)	638
AcuI	CTGAAG	3 cut(s)	35, 327, 605
AfaI	GTAC	2 cut(s)	552, 943
AfeI	AGCGCT	1 cut(s)	231
AfiI	CCNNNNNNNGG	3 cut(s)	454, 745, 1011
AgsI	TTSAA	5 cut(s)	69, 184, 279, 331, 445
AjnI	CCWGG	5 cut(s)	362, 435, 447, 520, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	537, 569
AluBI	AGCT	3 cut(s)	19, 264, 1085
AluI	AGCT	3 cut(s)	19, 264, 1085
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	5 cut(s)	361, 998, 1045, 1123, 1163
Alw44I	GTGCAC	1 cut(s)	749
AlwI	GGATC	2 cut(s)	54, 541
Aor51HI	AGCGCT	1 cut(s)	231
AoxI	GGCC	4 cut(s)	139, 298, 338, 1075
ApaLI	GTGCAC	1 cut(s)	749
ApeKI	GCWGC	2 cut(s)	19, 159
ApoI	RAATTY	1 cut(s)	638
ArsI	GACNNNNNNTTYG	4 cut(s)	609, 641, 715, 747
Asp700I	GAANNNNTTC	1 cut(s)	666
Asp718I	GGTACC	1 cut(s)	941
AspLEI	GCGC	2 cut(s)	207, 232
AspS9I	GGNCC	3 cut(s)	139, 299, 1076
AsuHPI	GGTGA	4 cut(s)	33, 121, 284, 536
BaeGI	GKGCMC	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	941
BbsI	GAAGAC	2 cut(s)	315, 819
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	2 cut(s)	6, 171
BccI	CCATC	4 cut(s)	367, 577, 706, 931
BceAI	ACGGC	1 cut(s)	510
BciT130I	CCWGG	5 cut(s)	364, 437, 449, 522, 615
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	5 cut(s)	361, 998, 1045, 1123, 1163
BfoI	RGCGCY	1 cut(s)	233
BisI	GCNGC	3 cut(s)	20, 160, 860
BlsI	GCNGC	3 cut(s)	21, 161, 861
BmcAI	AGTACT	1 cut(s)	552
Bme1390I	CCNGG	5 cut(s)	364, 437, 449, 522, 615
BmgT120I	GGNCC	3 cut(s)	139, 299, 1076
BmiI	GGNNCC	1 cut(s)	943
BmrFI	CCNGG	5 cut(s)	364, 437, 449, 522, 615
BmrI	ACTGGG	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	2 cut(s)	315, 819
BpmI	CTGGAG	3 cut(s)	385, 1065, 1183
BpuEI	CTTGAG	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	421
BsaI	GGTCTC	3 cut(s)	361, 998, 1123
BsaJI	CCNNGG	3 cut(s)	435, 613, 650
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	3 cut(s)	454, 745, 1011
Bse1I	ACTGG	3 cut(s)	63, 141, 739
Bse3DI	GCAATG	2 cut(s)	853, 854
Bse8I	GATNNNNATC	1 cut(s)	421
BseBI	CCWGG	5 cut(s)	364, 437, 449, 522, 615
BseDI	CCNNGG	3 cut(s)	435, 613, 650
BseGI	GGATG	4 cut(s)	359, 457, 588, 942
BseJI	GATNNNNATC	1 cut(s)	421
BseLI	CCNNNNNNNGG	3 cut(s)	454, 745, 1011
BseMI	GCAATG	2 cut(s)	853, 854
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	3 cut(s)	63, 141, 739
BseRI	GAGGAG	2 cut(s)	46, 584
BseSI	GKGCMC	1 cut(s)	753
BseXI	GCAGC	2 cut(s)	6, 171
BseYI	CCCAGC	1 cut(s)	407
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	4 cut(s)	141, 300, 340, 1077
BshNI	GGYRCC	1 cut(s)	941
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	3 cut(s)	454, 745, 1011
BsmAI	GTCTC	5 cut(s)	361, 998, 1045, 1123, 1163
BsmBI	CGTCTC	2 cut(s)	1045, 1163
BsmFI	GGGAC	1 cut(s)	596
BsmI	GAATGC	2 cut(s)	686, 833
BsnI	GGCC	4 cut(s)	141, 300, 340, 1077
Bso31I	GGTCTC	3 cut(s)	361, 998, 1123
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	3 cut(s)	46, 151, 533
BspACI	CCGC	3 cut(s)	60, 860, 956
BspANI	GGCC	4 cut(s)	141, 300, 340, 1077
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	943
BspPI	GGATC	2 cut(s)	54, 541
BspT107I	GGYRCC	1 cut(s)	941
BspTNI	GGTCTC	3 cut(s)	361, 998, 1123
BsrDI	GCAATG	2 cut(s)	853, 854
BsrI	ACTGG	3 cut(s)	63, 141, 739
BssECI	CCNNGG	3 cut(s)	435, 613, 650
BssMI	GATC	3 cut(s)	46, 151, 533
Bst2UI	CCWGG	5 cut(s)	364, 437, 449, 522, 615
Bst4CI	ACNGT	1 cut(s)	748
Bst6I	CTCTTC	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	82, 1032, 1150
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	650
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	4 cut(s)	359, 457, 588, 942
BstFNI	CGCG	1 cut(s)	205
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	2 cut(s)	207, 232
BstKTI	GATC	3 cut(s)	49, 154, 536
BstMAI	GTCTC	5 cut(s)	361, 998, 1045, 1123, 1163
BstMBI	GATC	3 cut(s)	46, 151, 533
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	5 cut(s)	364, 437, 449, 522, 615
BstNSI	RCATGY	2 cut(s)	1034, 1152
BstSCI	CCNGG	5 cut(s)	362, 435, 447, 520, 613
BstSLI	GKGCMC	1 cut(s)	753
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	6, 171
BstV2I	GAAGAC	2 cut(s)	315, 819
BstXI	CCANNNNNNTGG	1 cut(s)	657
BsuRI	GGCC	4 cut(s)	141, 300, 340, 1077
BtgI	CCRYGG	1 cut(s)	650
BtsCI	GGATG	4 cut(s)	359, 457, 588, 942
BtsIMutI	CAGTG	1 cut(s)	929
Cac8I	GCNNGC	3 cut(s)	82, 1032, 1150
CfoI	GCGC	2 cut(s)	207, 232
Cfr13I	GGNCC	3 cut(s)	139, 299, 1076
CseI	GACGC	2 cut(s)	211, 320
Csp6I	GTAC	2 cut(s)	551, 942
CviAII	CATG	3 cut(s)	116, 1031, 1149
CviQI	GTAC	2 cut(s)	551, 942
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	3 cut(s)	48, 153, 535
DpnII	GATC	3 cut(s)	46, 151, 533
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	49
Eco31I	GGTCTC	3 cut(s)	361, 998, 1123
Eco32I	GATATC	1 cut(s)	352
Eco47III	AGCGCT	1 cut(s)	231
Eco57I	CTGAAG	3 cut(s)	35, 327, 605
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRII	CCWGG	5 cut(s)	362, 435, 447, 520, 613
EcoRV	GATATC	1 cut(s)	352
Esp3I	CGTCTC	2 cut(s)	1045, 1163
FaeI	CATG	3 cut(s)	119, 1034, 1152
FalI	AAGNNNNNCTT	4 cut(s)	339, 371, 537, 569
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	3 cut(s)	115, 1030, 1148
FauI	CCCGC	1 cut(s)	963
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	20, 160, 860
FokI	GGATG	4 cut(s)	346, 464, 595, 949
Fsp4HI	GCNGC	3 cut(s)	20, 160, 860
GlaI	GCGC	2 cut(s)	206, 231
GluI	GCNGC	3 cut(s)	20, 160, 860
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	3 cut(s)	385, 1065, 1183
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	4 cut(s)	141, 300, 340, 1077
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	2 cut(s)	211, 320
HhaI	GCGC	2 cut(s)	207, 232
Hin1II	CATG	3 cut(s)	119, 1034, 1152
Hin6I	GCGC	2 cut(s)	205, 230
HinP1I	GCGC	2 cut(s)	205, 230
HincII	GTYRAC	2 cut(s)	697, 744
HindII	GTYRAC	2 cut(s)	697, 744
HinfI	GANTC	8 cut(s)	112, 244, 275, 331, 815, 851, 1047, 1165
HpaI	GTTAAC	1 cut(s)	697
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	4 cut(s)	33, 121, 284, 536
Hpy166II	GTNNAC	6 cut(s)	527, 697, 723, 744, 751, 899
Hpy188I	TCNGA	8 cut(s)	15, 51, 156, 346, 429, 483, 541, 574
Hpy188III	TCNNGA	4 cut(s)	248, 320, 1044, 1162
Hpy8I	GTNNAC	6 cut(s)	527, 697, 723, 744, 751, 899
HpyAV	CCTTC	2 cut(s)	351, 365
HpyCH4III	ACNGT	1 cut(s)	748
HpyCH4V	TGCA	5 cut(s)	84, 514, 751, 846, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	119, 1034, 1152
HspAI	GCGC	2 cut(s)	205, 230
KpnI	GGTACC	1 cut(s)	945
Ksp22I	TGATCA	1 cut(s)	151
KspAI	GTTAAC	1 cut(s)	697
Kzo9I	GATC	3 cut(s)	46, 151, 533
LmnI	GCTCC	1 cut(s)	269
Lsp1109I	GCAGC	2 cut(s)	6, 171
MaeIII	GTNAC	2 cut(s)	132, 586
MalI	GATC	3 cut(s)	48, 153, 535
MboI	GATC	3 cut(s)	46, 151, 533
MboII	GAAGA	7 cut(s)	140, 320, 359, 494, 557, 674, 824
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	4 cut(s)	197, 638, 727, 1008
MlyI	GAGTC	3 cut(s)	809, 1056, 1174
MroXI	GAANNNNTTC	1 cut(s)	666
MseI	TTAA	4 cut(s)	642, 696, 1068, 1186
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	5 cut(s)	364, 437, 449, 522, 615
Mva1269I	GAATGC	2 cut(s)	686, 833
MvaI	CCWGG	5 cut(s)	364, 437, 449, 522, 615
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	3 cut(s)	46, 151, 533
NlaIII	CATG	3 cut(s)	119, 1034, 1152
NlaIV	GGNNCC	1 cut(s)	943
NmuCI	GTSAC	1 cut(s)	586
NspI	RCATGY	2 cut(s)	1034, 1152
PaeI	GCATGC	2 cut(s)	1034, 1152
PctI	GAATGC	2 cut(s)	686, 833
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	5 cut(s)	112, 244, 275, 331, 851
PfoI	TCCNGGA	1 cut(s)	362
PkrI	GCNGC	3 cut(s)	21, 161, 861
PleI	GAGTC	3 cut(s)	809, 1055, 1173
PpsI	GAGTC	3 cut(s)	809, 1055, 1173
Psp6I	CCWGG	5 cut(s)	362, 435, 447, 520, 613
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	5 cut(s)	362, 435, 447, 520, 613
PspN4I	GGNNCC	1 cut(s)	943
PspPI	GGNCC	3 cut(s)	139, 299, 1076
RsaI	GTAC	2 cut(s)	552, 943
RsaNI	GTAC	2 cut(s)	551, 942
SaqAI	TTAA	4 cut(s)	642, 696, 1068, 1186
SatI	GCNGC	3 cut(s)	20, 160, 860
Sau3AI	GATC	3 cut(s)	46, 151, 533
Sau96I	GGNCC	3 cut(s)	139, 299, 1076
ScaI	AGTACT	1 cut(s)	552
SchI	GAGTC	3 cut(s)	809, 1056, 1174
ScrFI	CCNGG	5 cut(s)	364, 437, 449, 522, 615
SduI	GDGCHC	1 cut(s)	753
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
SphI	GCATGC	2 cut(s)	1034, 1152
Sse9I	AATT	4 cut(s)	197, 638, 727, 1008
SsiI	CCGC	3 cut(s)	60, 860, 956
StyD4I	CCNGG	5 cut(s)	362, 435, 447, 520, 613
TaaI	ACNGT	1 cut(s)	748
TasI	AATT	4 cut(s)	197, 638, 727, 1008
TatI	WGTACW	1 cut(s)	550
TauI	GCSGC	1 cut(s)	862
TfiI	GAWTC	5 cut(s)	112, 244, 275, 331, 851
Tru1I	TTAA	4 cut(s)	642, 696, 1068, 1186
Tru9I	TTAA	4 cut(s)	642, 696, 1068, 1186
TscAI	CASTG	1 cut(s)	929
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	2 cut(s)	19, 159
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	6 cut(s)	558, 679, 825, 864, 1034, 1152
TspGWI	ACGGA	3 cut(s)	62, 1027, 1145
TspRI	CASTG	1 cut(s)	929
VneI	GTGCAC	1 cut(s)	749
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	1 cut(s)	638
XceI	RCATGY	2 cut(s)	1034, 1152
XmnI	GAANNNNTTC	1 cut(s)	666
ZrmI	AGTACT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.