Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001740

Physical Location & Seq

Genomic Coordinates Forward (+)

38968153 .. 38971617

Gene Structure 3465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1169400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGACGACGGAGGCGGTGAACCTGCCGATCATTGACTTGTCCTCATCAGATTCCATCTCCTCTGCCAATTCAATCCGTCAGGCATGCATAGAATATGGTTTCTTCTACCTGGTGAATCATGGCGTCGAGGAAGAGCTGTTTGCAGAGGTGTTCGATCGGAGCCGCAACTTCTTTTCGCTTCCTCTGGAAGATAAGTTGAAATTGACTCGCAAGCACCACAGAGGCTACACCCCACTATTTATGGAGAATCTCGACTTCGCTTCCAGCTCCAAAGGTGACTCGAAAGAGAGTTTTTATGTTGGCTCTTTAGATGACCCAACTCTGATTAATTTGAACCAATGGCCTCCAGAAGATATCCTGCCATCTTGGAGGCCTGCAATGGAATTGTACTATAGAAAAGTCCTGGGTGTGTGGATAGCACCACCCATCTACGAATTTCTGGTGTTGGATATGCTGTCTCAGGTCTGCTGGAAAAAGATTAATCTCTCTCTGATTGCCCTGGCTTTAAACCTGGATGAGGACTTTTTCGAGAAAGTGGGGGCACTGAATAAACCAAGGGGTCTTCTTCGACTTTTGCACTATCCAGGTGAGCTGGGATCAACTGACGAAGAAATATATGGTGCTTCTGCTCATTCAGATTATGGCATGGTCACTCTCCTTGCATCCAATGGAGTTCCTGGACTTCAGGCATGCTTTTTGTTTGTTTGTAGGGACAAATCTAAGCAACCTCGAATCTGGGAAGATGTTCTTCACATAGATGGGGCATTCATTGTCAACATTGGGGACATGATGGAGAGGTGGACTAATTGTTTGTTCAGGTCAACACTGCATAGAGTGATGCCAGCAGGACAAGAACGCTACTCCGTGGCTTTCTTCATGGATCCCAATGAAGATTGTGTGGTGGAATGTCTGAAAAGTTGTTGCAGTGAAGAATCACCGGCAAGATTTCCTCCCGTCCGCAGCGGGGACTACCTGGAAGAGCGTTTTCGGCTTACGTATGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

336

Amino Acids

38.22

Weight (kDa)

4.95

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	8 - 117	8.3e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	188 - 295	1e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16770
fragaria_vesca	FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520
malus_domestica	MD00G1169400.v1.1 MD00G1169500.v1.1 MD04G1060700.v1.1 MD04G1060800.v1.1 MD11G1277300.v1.1
prunus_persica	Prupe.5G064700_v2.0.a1
pyrus_communis	pycom04g05460 pycom04g05470
rosa_chinensis	RchiOBHm_Chr7g0204121 RchiOBHm_Chr7g0204131
rosa_laevigata	RLG00000003486 RLG00000003488
rosa_multiflora	Rmu_sc0001311.1_g000016 Rmu_sc0001311.1_g000018
rosa_roxburghii	Rroxscaffold_3G00253320 Rroxscaffold_3G00253340
rosa_rugosa	Rorug07G0080800 Rorug07G0080900 Rorug07G0081000
rosa_samantha	Rh7AG210800 Rh7BG209300 Rh7BG209500 Rh7CG223200 Rh7CG223400 Rh7DG217500 Rh7DG217700
rosa_wichuraiana	Rw7G018340 Rw7G018350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AciI	CCGC	4 cut(s)	14, 163, 958, 963
AclWI	GGATC	3 cut(s)	604, 875, 888
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	668
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	517, 964
AgsI	TTSAA	3 cut(s)	72, 199, 334
AjnI	CCWGG	7 cut(s)	108, 402, 498, 510, 583, 676, 972
AluBI	AGCT	3 cut(s)	136, 267, 592
AluI	AGCT	3 cut(s)	136, 267, 592
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	3 cut(s)	604, 875, 888
AoxI	GGCC	2 cut(s)	341, 371
ApeKI	GCWGC	1 cut(s)	960
ApoI	RAATTY	1 cut(s)	434
ArsI	GACNNNNNNTTYG	2 cut(s)	793, 825
AseI	ATTAAT	2 cut(s)	327, 480
Asp700I	GAANNNNTTC	1 cut(s)	744
AsuHPI	GGTGA	5 cut(s)	28, 124, 287, 599, 927
BaeGI	GKGCMC	1 cut(s)	544
BamHI	GGATCC	1 cut(s)	880
BbsI	GAAGAC	1 cut(s)	554
BbvI	GCAGC	1 cut(s)	972
BccI	CCATC	5 cut(s)	62, 370, 434, 752, 784
BciT130I	CCWGG	7 cut(s)	110, 404, 500, 512, 585, 678, 974
BcoDI	GTCTC	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	30
BisI	GCNGC	2 cut(s)	163, 961
BlsI	GCNGC	2 cut(s)	164, 962
Bme1390I	CCNGG	7 cut(s)	110, 404, 500, 512, 585, 678, 974
BmiI	GGNNCC	2 cut(s)	161, 882
BmrFI	CCNGG	7 cut(s)	110, 404, 500, 512, 585, 678, 974
BmsI	GCATC	2 cut(s)	671, 828
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	330
BsaAI	YACGTR	1 cut(s)	996
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	4 cut(s)	403, 498, 554, 864
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 964
Bse118I	RCCGGY	1 cut(s)	937
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	7 cut(s)	110, 404, 500, 512, 585, 678, 974
BseDI	CCNNGG	4 cut(s)	403, 498, 554, 864
BseGI	GGATG	2 cut(s)	520, 662
BseLI	CCNNNNNNNGG	2 cut(s)	517, 964
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	473
BseRI	GAGGAG	1 cut(s)	49
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	1 cut(s)	972
BseYI	CCCAGC	1 cut(s)	592
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	343, 373
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	938
BslFI	GGGAC	3 cut(s)	725, 797, 980
BslI	CCNNNNNNNGG	2 cut(s)	517, 964
BsmAI	GTCTC	1 cut(s)	462
BsmFI	GGGAC	3 cut(s)	725, 797, 980
BsmI	GAATGC	1 cut(s)	764
BsnI	GGCC	2 cut(s)	343, 373
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	4 cut(s)	27, 154, 596, 880
BspACI	CCGC	4 cut(s)	14, 163, 958, 963
BspANI	GGCC	2 cut(s)	343, 373
BspCNI	CTCAG	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	161, 882
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	3 cut(s)	604, 875, 888
BspQI	GCTCTTC	2 cut(s)	126, 972
BsrDI	GCAATG	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	937
BssAI	RCCGGY	1 cut(s)	937
BssECI	CCNNGG	4 cut(s)	403, 498, 554, 864
BssMI	GATC	4 cut(s)	27, 154, 596, 880
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	7 cut(s)	110, 404, 500, 512, 585, 678, 974
Bst6I	CTCTTC	2 cut(s)	126, 972
BstACI	GRCGYC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	996
BstC8I	GCNNGC	5 cut(s)	85, 212, 375, 691, 843
BstDEI	CTNAG	2 cut(s)	459, 720
BstDSI	CCRYGG	1 cut(s)	864
BstENI	CCTNNNNNAGG	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	520, 662
BstKTI	GATC	4 cut(s)	30, 157, 599, 883
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	4 cut(s)	27, 154, 596, 880
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	988
BstNI	CCWGG	7 cut(s)	110, 404, 500, 512, 585, 678, 974
BstNSI	RCATGY	2 cut(s)	87, 693
BstSCI	CCNGG	7 cut(s)	108, 402, 498, 510, 583, 676, 972
BstSFI	CTRYAG	1 cut(s)	391
BstSLI	GKGCMC	1 cut(s)	544
BstSNI	TACGTA	1 cut(s)	996
BstV1I	GCAGC	1 cut(s)	972
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
BsuRI	GGCC	2 cut(s)	343, 373
BtgI	CCRYGG	1 cut(s)	864
BtsCI	GGATG	2 cut(s)	520, 662
BtsI	GCAGTG	2 cut(s)	824, 931
BtsIMutI	CAGTG	3 cut(s)	542, 824, 931
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	5 cut(s)	85, 212, 375, 691, 843
Cfr10I	RCCGGY	1 cut(s)	937
CseI	GACGC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	6 cut(s)	84, 119, 646, 690, 787, 877
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	2 cut(s)	459, 720
DpnI	GATC	4 cut(s)	29, 156, 598, 882
DpnII	GATC	4 cut(s)	27, 154, 596, 880
DraI	TTTAAA	1 cut(s)	507
Eam1104I	CTCTTC	2 cut(s)	126, 972
EarI	CTCTTC	2 cut(s)	126, 972
Eco105I	TACGTA	1 cut(s)	996
Eco130I	CCWWGG	1 cut(s)	554
Eco147I	AGGCCT	1 cut(s)	373
Eco32I	GATATC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	668
EcoNI	CCTNNNNNAGG	1 cut(s)	515
EcoRII	CCWGG	7 cut(s)	108, 402, 498, 510, 583, 676, 972
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	554
EcoT22I	ATGCAT	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	6 cut(s)	87, 122, 649, 693, 790, 880
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FaqI	GGGAC	3 cut(s)	725, 797, 980
FatI	CATG	6 cut(s)	83, 118, 645, 689, 786, 876
FauI	CCCGC	1 cut(s)	956
Fnu4HI	GCNGC	2 cut(s)	163, 961
FokI	GGATG	2 cut(s)	527, 649
Fsp4HI	GCNGC	2 cut(s)	163, 961
GluI	GCNGC	2 cut(s)	163, 961
GsaI	CCCAGC	1 cut(s)	596
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	343, 373
HapII	CCGG	1 cut(s)	938
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	6 cut(s)	87, 122, 649, 693, 790, 880
HincII	GTYRAC	2 cut(s)	775, 822
HindII	GTYRAC	2 cut(s)	775, 822
HinfI	GANTC	7 cut(s)	50, 115, 205, 247, 278, 732, 932
HpaII	CCGG	1 cut(s)	938
HphI	GGTGA	5 cut(s)	28, 124, 287, 599, 927
Hpy166II	GTNNAC	4 cut(s)	19, 775, 801, 822
Hpy188I	TCNGA	6 cut(s)	49, 159, 324, 492, 637, 912
Hpy188III	TCNNGA	4 cut(s)	185, 251, 347, 529
Hpy8I	GTNNAC	4 cut(s)	19, 775, 801, 822
Hpy99I	CGWCG	2 cut(s)	10, 128
HpyCH4IV	ACGT	1 cut(s)	995
HpyCH4V	TGCA	8 cut(s)	87, 143, 377, 577, 662, 829, 924, 1001
HpyF10VI	GCNNNNNNNGC	1 cut(s)	988
HpyF3I	CTNAG	2 cut(s)	459, 720
HpySE526I	ACGT	1 cut(s)	995
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	6 cut(s)	87, 122, 649, 693, 790, 880
Kzo9I	GATC	4 cut(s)	27, 154, 596, 880
LguI	GCTCTTC	2 cut(s)	126, 972
LmnI	GCTCC	2 cut(s)	159, 272
Lsp1109I	GCAGC	1 cut(s)	972
LweI	GCATC	2 cut(s)	671, 828
MabI	ACCWGGT	1 cut(s)	108
MaeII	ACGT	1 cut(s)	995
MaeIII	GTNAC	2 cut(s)	275, 649
MalI	GATC	4 cut(s)	29, 156, 598, 882
MboI	GATC	4 cut(s)	27, 154, 596, 880
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	6 cut(s)	67, 200, 328, 383, 434, 805
MlyI	GAGTC	2 cut(s)	199, 272
MmeI	TCCRAC	1 cut(s)	426
Mph1103I	ATGCAT	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	4 cut(s)	327, 480, 506, 1006
MslI	CAYNNNNRTG	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	963
MspI	CCGG	1 cut(s)	938
MspR9I	CCNGG	7 cut(s)	110, 404, 500, 512, 585, 678, 974
Mva1269I	GAATGC	1 cut(s)	764
MvaI	CCWGG	7 cut(s)	110, 404, 500, 512, 585, 678, 974
MwoI	GCNNNNNNNGC	1 cut(s)	988
NdeII	GATC	4 cut(s)	27, 154, 596, 880
NlaIII	CATG	6 cut(s)	87, 122, 649, 693, 790, 880
NlaIV	GGNNCC	2 cut(s)	161, 882
NmuCI	GTSAC	2 cut(s)	275, 649
NsiI	ATGCAT	1 cut(s)	89
NspI	RCATGY	2 cut(s)	87, 693
PaeI	GCATGC	2 cut(s)	87, 693
PceI	AGGCCT	1 cut(s)	373
PciSI	GCTCTTC	2 cut(s)	126, 972
PctI	GAATGC	1 cut(s)	764
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	5 cut(s)	50, 115, 247, 732, 932
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	2 cut(s)	164, 962
Ple19I	CGATCG	1 cut(s)	157
PleI	GAGTC	2 cut(s)	199, 272
PpsI	GAGTC	2 cut(s)	199, 272
Ppu21I	YACGTR	1 cut(s)	996
PshBI	ATTAAT	2 cut(s)	327, 480
Psp6I	CCWGG	7 cut(s)	108, 402, 498, 510, 583, 676, 972
PspFI	CCCAGC	1 cut(s)	592
PspGI	CCWGG	7 cut(s)	108, 402, 498, 510, 583, 676, 972
PspN4I	GGNNCC	2 cut(s)	161, 882
PsuI	RGATCY	1 cut(s)	880
PvuI	CGATCG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	756
SapI	GCTCTTC	2 cut(s)	126, 972
SaqAI	TTAA	4 cut(s)	327, 480, 506, 1006
SatI	GCNGC	2 cut(s)	163, 961
Sau3AI	GATC	4 cut(s)	27, 154, 596, 880
SchI	GAGTC	2 cut(s)	199, 272
ScrFI	CCNGG	7 cut(s)	110, 404, 500, 512, 585, 678, 974
SduI	GDGCHC	1 cut(s)	544
SexAI	ACCWGGT	1 cut(s)	108
SfaNI	GCATC	2 cut(s)	671, 828
SfcI	CTRYAG	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	756
SnaBI	TACGTA	1 cut(s)	996
SphI	GCATGC	2 cut(s)	87, 693
Sse9I	AATT	6 cut(s)	67, 200, 328, 383, 434, 805
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	4 cut(s)	14, 163, 958, 963
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	7 cut(s)	108, 402, 498, 510, 583, 676, 972
StyI	CCWWGG	1 cut(s)	554
TaiI	ACGT	1 cut(s)	998
TaqI	TCGA	7 cut(s)	126, 153, 252, 281, 528, 568, 730
TasI	AATT	6 cut(s)	67, 200, 328, 383, 434, 805
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	5 cut(s)	50, 115, 247, 732, 932
Tru1I	TTAA	4 cut(s)	327, 480, 506, 1006
Tru9I	TTAA	4 cut(s)	327, 480, 506, 1006
TscAI	CASTG	3 cut(s)	549, 831, 931
TseFI	GTSAC	2 cut(s)	275, 649
TseI	GCWGC	1 cut(s)	960
Tsp45I	GTSAC	2 cut(s)	275, 649
TspDTI	ATGAA	3 cut(s)	757, 865, 903
TspGWI	ACGGA	3 cut(s)	23, 65, 853
TspRI	CASTG	3 cut(s)	549, 831, 931
VspI	ATTAAT	2 cut(s)	327, 480
XagI	CCTNNNNNAGG	1 cut(s)	515
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	2 cut(s)	87, 693
XmnI	GAANNNNTTC	1 cut(s)	744
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.