Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001740

Physical Location & Seq

Genomic Coordinates Reverse (-)

19682309 .. 19687363

Gene Structure 5055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G018340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAATTCAACAGCACTGCCCATCATAGACTTATCCTCACCGGACCGCACCTCCTCCGCCAGTTTAATCCGTCAGGCTTGCATAGGGTGTGGTTTCTTTTACTTGGTGAATCATGGTGTTGAGGAAGAGTTACTTGGCCAAGTGTTTGATCAGAGCAGTAACTTTTTTTCACTTCCTTTGGAAGTTAAGTCCAAATTGGCGCGCAAACAAAACAGAGGCTATACACCACTATTTGCTGAGAACCTTGACCCCACTGCCAGCTCCAAAGGTGATTCAAAAGAGAGTTTTTACATTGGCCCTTTAGAAGACGTAACTCAAAATAAGTTGAATCAATGGCCTTCAGAAGATATCCTTCCATCCTGGAGACCTACAATGGAATCCTACTATAAAAAAGTTCTTTCCGCTGGGAAAAGATTATTATCTCTGATTGCCCTGGCTTTGAACCTGGATGAGGATTTTTTTGAGAAAGTGGGGGGTCTGAATAAACACACAGCACTTCTTCGCCTTTTGCACTACCCAGGTCAACTGGGATCATCTGATGAAGAAGTACTTGGTGCTTCTGCTCATTCAGATTATGGAACAGTCACACTCCTGGCATCCAATGGTGTCCCAGGACTTCAGGTTTGTAGGGAAAAATCTAAGCAACCACGGGTTTGGGAAGATGTTATTCACATAGATGGAGCATTCATTGTTAACATTGGGGATTTGATGGAGAGGTGGACTAATTGTTTGTTCCAGTCAACGGTGCACAGAGTTATATCAGCAGGACAAGAACGCTACTCTGTGGCTTTCTTCTTAGACCCCAATGAAGACTCTCTGGTAGAATGCCTGGCAAGTTGTTGCAATGAATCATTGCCGCCAAGATTTCCTCCCATCCGCAGCGGGGACTACCTGAAAGAGCGGTTTAGGCTTACTTATGGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

308

Amino Acids

34.32

Weight (kDa)

5.35

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	6 - 115	4.5e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	166 - 268	5.8e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16770
fragaria_vesca	FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520
malus_domestica	MD00G1169400.v1.1 MD00G1169500.v1.1 MD04G1060700.v1.1 MD04G1060800.v1.1 MD11G1277300.v1.1
prunus_persica	Prupe.5G064700_v2.0.a1
pyrus_communis	pycom04g05460 pycom04g05470
rosa_chinensis	RchiOBHm_Chr7g0204121 RchiOBHm_Chr7g0204131
rosa_laevigata	RLG00000003486 RLG00000003488
rosa_multiflora	Rmu_sc0001311.1_g000016 Rmu_sc0001311.1_g000018
rosa_roxburghii	Rroxscaffold_3G00253320 Rroxscaffold_3G00253340
rosa_rugosa	Rorug07G0080800 Rorug07G0080900 Rorug07G0081000
rosa_samantha	Rh7AG210800 Rh7BG209300 Rh7BG209500 Rh7CG223200 Rh7CG223400 Rh7DG217500 Rh7DG217700
rosa_wichuraiana	Rw7G018340 Rw7G018350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	901
AccII	CGCG	1 cut(s)	202
AciI	CCGC	7 cut(s)	46, 57, 402, 857, 877, 882, 901
AclWI	GGATC	1 cut(s)	538
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	2 cut(s)	324, 602
AfaI	GTAC	1 cut(s)	549
AfiI	CCNNNNNNNGG	3 cut(s)	451, 742, 883
AgsI	TTSAA	4 cut(s)	9, 276, 328, 442
AjnI	CCWGG	7 cut(s)	359, 432, 444, 517, 591, 610, 828
AjuI	GAANNNNNNNTTGG	4 cut(s)	117, 149, 534, 566
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw21I	GWGCWC	1 cut(s)	750
Alw26I	GTCTC	1 cut(s)	358
Alw44I	GTGCAC	1 cut(s)	746
AlwI	GGATC	1 cut(s)	538
AoxI	GGCC	3 cut(s)	136, 295, 335
ApaLI	GTGCAC	1 cut(s)	746
ApeKI	GCWGC	1 cut(s)	879
ApoI	RAATTY	1 cut(s)	4
ArsI	GACNNNNNNTTYG	4 cut(s)	606, 638, 712, 744
AspLEI	GCGC	2 cut(s)	202, 204
AspS9I	GGNCC	2 cut(s)	43, 296
AsuHPI	GGTGA	3 cut(s)	30, 118, 281
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	750
BalI	TGGCCA	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	312, 816
Bbv12I	GWGCWC	1 cut(s)	750
BbvI	GCAGC	1 cut(s)	891
BccI	CCATC	5 cut(s)	29, 364, 671, 703, 881
BciT130I	CCWGG	7 cut(s)	361, 434, 446, 519, 593, 612, 830
BclI	TGATCA	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	358
BisI	GCNGC	2 cut(s)	857, 880
BlsI	GCNGC	2 cut(s)	858, 881
BmcAI	AGTACT	1 cut(s)	549
Bme1390I	CCNGG	7 cut(s)	361, 434, 446, 519, 593, 612, 830
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	43, 296
BmrFI	CCNGG	7 cut(s)	361, 434, 446, 519, 593, 612, 830
BmrI	ACTGGG	1 cut(s)	536
BmsI	GCATC	1 cut(s)	605
BmuI	ACTGGG	1 cut(s)	536
BpiI	GAAGAC	2 cut(s)	312, 816
BpmI	CTGGAG	1 cut(s)	382
BsaBI	GATNNNNATC	1 cut(s)	418
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	4 cut(s)	432, 517, 610, 647
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	3 cut(s)	451, 742, 883
Bse1I	ACTGG	3 cut(s)	60, 531, 736
Bse3DI	GCAATG	2 cut(s)	850, 851
Bse8I	GATNNNNATC	1 cut(s)	418
BseBI	CCWGG	7 cut(s)	361, 434, 446, 519, 593, 612, 830
BseDI	CCNNGG	4 cut(s)	432, 517, 610, 647
BseGI	GGATG	4 cut(s)	356, 454, 596, 873
BseJI	GATNNNNATC	1 cut(s)	418
BseLI	CCNNNNNNNGG	3 cut(s)	451, 742, 883
BseMI	GCAATG	2 cut(s)	850, 851
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	3 cut(s)	60, 531, 736
BsePI	GCGCGC	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	750
BseXI	GCAGC	1 cut(s)	891
BseYI	CCCAGC	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	138, 297, 337
BsiHKAI	GWGCWC	1 cut(s)	750
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	593, 899
BslI	CCNNNNNNNGG	3 cut(s)	451, 742, 883
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	2 cut(s)	593, 899
BsmI	GAATGC	2 cut(s)	683, 830
BsnI	GGCC	3 cut(s)	138, 297, 337
Bso31I	GGTCTC	1 cut(s)	358
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	2 cut(s)	148, 530
BspACI	CCGC	7 cut(s)	46, 57, 402, 857, 877, 882, 901
BspANI	GGCC	3 cut(s)	138, 297, 337
BspCNI	CTCAG	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	538
BspTNI	GGTCTC	1 cut(s)	358
BsrBI	CCGCTC	1 cut(s)	901
BsrDI	GCAATG	2 cut(s)	850, 851
BsrI	ACTGG	3 cut(s)	60, 531, 736
BssECI	CCNNGG	4 cut(s)	432, 517, 610, 647
BssHII	GCGCGC	1 cut(s)	200
BssMI	GATC	2 cut(s)	148, 530
Bst2UI	CCWGG	7 cut(s)	361, 434, 446, 519, 593, 612, 830
Bst4CI	ACNGT	2 cut(s)	583, 745
Bst6I	CTCTTC	1 cut(s)	120
BstC8I	GCNNGC	3 cut(s)	79, 202, 259
BstDEI	CTNAG	3 cut(s)	237, 639, 796
BstDSI	CCRYGG	1 cut(s)	647
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	4 cut(s)	356, 454, 596, 873
BstFNI	CGCG	1 cut(s)	202
BstHHI	GCGC	2 cut(s)	202, 204
BstKTI	GATC	2 cut(s)	151, 533
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	2 cut(s)	148, 530
BstMWI	GCNNNNNNNGC	1 cut(s)	907
BstNI	CCWGG	7 cut(s)	361, 434, 446, 519, 593, 612, 830
BstSCI	CCNGG	7 cut(s)	359, 432, 444, 517, 591, 610, 828
BstSLI	GKGCMC	1 cut(s)	750
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	891
BstV2I	GAAGAC	2 cut(s)	312, 816
BstXI	CCANNNNNNTGG	1 cut(s)	654
BsuRI	GGCC	3 cut(s)	138, 297, 337
BtgI	CCRYGG	1 cut(s)	647
BtsCI	GGATG	4 cut(s)	356, 454, 596, 873
BtsI	GCAGTG	2 cut(s)	14, 252
BtsIMutI	CAGTG	2 cut(s)	14, 252
Cac8I	GCNNGC	3 cut(s)	79, 202, 259
CfoI	GCGC	2 cut(s)	202, 204
Cfr13I	GGNCC	2 cut(s)	43, 296
CpoI	CGGWCCG	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	548
CspI	CGGWCCG	1 cut(s)	43
CviAII	CATG	1 cut(s)	113
CviQI	GTAC	1 cut(s)	548
DdeI	CTNAG	3 cut(s)	237, 639, 796
DpnI	GATC	2 cut(s)	150, 532
DpnII	GATC	2 cut(s)	148, 530
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	358
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	2 cut(s)	324, 602
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	7 cut(s)	359, 432, 444, 517, 591, 610, 828
EcoRV	GATATC	1 cut(s)	349
FaeI	CATG	1 cut(s)	116
FalI	AAGNNNNNCTT	6 cut(s)	117, 149, 336, 368, 534, 566
FaqI	GGGAC	2 cut(s)	593, 899
FatI	CATG	1 cut(s)	112
FauI	CCCGC	1 cut(s)	875
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	857, 880
FokI	GGATG	4 cut(s)	343, 461, 583, 860
Fsp4HI	GCNGC	2 cut(s)	857, 880
GlaI	GCGC	2 cut(s)	201, 203
GluI	GCNGC	2 cut(s)	857, 880
GsaI	CCCAGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	3 cut(s)	138, 297, 337
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	2 cut(s)	202, 204
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	2 cut(s)	200, 202
HinP1I	GCGC	2 cut(s)	200, 202
HincII	GTYRAC	3 cut(s)	524, 694, 741
HindII	GTYRAC	3 cut(s)	524, 694, 741
HinfI	GANTC	6 cut(s)	109, 272, 328, 377, 812, 848
HpaI	GTTAAC	1 cut(s)	694
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	3 cut(s)	30, 118, 281
Hpy166II	GTNNAC	5 cut(s)	524, 694, 720, 741, 748
Hpy188I	TCNGA	6 cut(s)	153, 343, 426, 480, 538, 571
Hpy8I	GTNNAC	5 cut(s)	524, 694, 720, 741, 748
HpyAV	CCTTC	2 cut(s)	348, 362
HpyCH4III	ACNGT	2 cut(s)	583, 745
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	4 cut(s)	81, 511, 748, 843
HpyF10VI	GCNNNNNNNGC	1 cut(s)	907
HpyF3I	CTNAG	3 cut(s)	237, 639, 796
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	2 cut(s)	200, 202
Ksp22I	TGATCA	1 cut(s)	148
KspAI	GTTAAC	1 cut(s)	694
Kzo9I	GATC	2 cut(s)	148, 530
LmnI	GCTCC	2 cut(s)	266, 680
Lsp1109I	GCAGC	1 cut(s)	891
LweI	GCATC	1 cut(s)	605
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	4 cut(s)	129, 158, 310, 583
MalI	GATC	2 cut(s)	150, 532
MbiI	CCGCTC	1 cut(s)	901
MboI	GATC	2 cut(s)	148, 530
MboII	GAAGA	8 cut(s)	137, 317, 356, 491, 554, 671, 784, 821
MhlI	GDGCHC	1 cut(s)	750
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	3 cut(s)	4, 194, 724
MluNI	TGGCCA	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	806
MnlI	CCTC	8 cut(s)	46, 61, 64, 115, 209, 445, 708, 879
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	3 cut(s)	65, 186, 693
MslI	CAYNNNNRTG	1 cut(s)	675
Msp20I	TGGCCA	1 cut(s)	138
MspA1I	CMGCKG	2 cut(s)	404, 882
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	7 cut(s)	361, 434, 446, 519, 593, 612, 830
Mva1269I	GAATGC	2 cut(s)	683, 830
MvaI	CCWGG	7 cut(s)	361, 434, 446, 519, 593, 612, 830
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	907
NdeII	GATC	2 cut(s)	148, 530
NlaIII	CATG	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	583
PauI	GCGCGC	1 cut(s)	200
PctI	GAATGC	2 cut(s)	683, 830
PfeI	GAWTC	5 cut(s)	109, 272, 328, 377, 848
PfoI	TCCNGGA	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	858, 881
PleI	GAGTC	1 cut(s)	806
PpsI	GAGTC	1 cut(s)	806
Psp6I	CCWGG	7 cut(s)	359, 432, 444, 517, 591, 610, 828
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	7 cut(s)	359, 432, 444, 517, 591, 610, 828
PspPI	GGNCC	2 cut(s)	43, 296
PteI	GCGCGC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	549
RsaNI	GTAC	1 cut(s)	548
RseI	CAYNNNNRTG	1 cut(s)	675
Rsr2I	CGGWCCG	1 cut(s)	43
RsrII	CGGWCCG	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	65, 186, 693
SatI	GCNGC	2 cut(s)	857, 880
Sau3AI	GATC	2 cut(s)	148, 530
Sau96I	GGNCC	2 cut(s)	43, 296
ScaI	AGTACT	1 cut(s)	549
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	7 cut(s)	361, 434, 446, 519, 593, 612, 830
SduI	GDGCHC	1 cut(s)	750
SfaNI	GCATC	1 cut(s)	605
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	675
Sse9I	AATT	3 cut(s)	4, 194, 724
SsiI	CCGC	7 cut(s)	46, 57, 402, 857, 877, 882, 901
StyD4I	CCNGG	7 cut(s)	359, 432, 444, 517, 591, 610, 828
TaaI	ACNGT	2 cut(s)	583, 745
TaiI	ACGT	1 cut(s)	312
TasI	AATT	3 cut(s)	4, 194, 724
TatI	WGTACW	1 cut(s)	547
TauI	GCSGC	1 cut(s)	859
TfiI	GAWTC	5 cut(s)	109, 272, 328, 377, 848
Tru1I	TTAA	3 cut(s)	65, 186, 693
Tru9I	TTAA	3 cut(s)	65, 186, 693
TscAI	CASTG	2 cut(s)	21, 259
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	1 cut(s)	879
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	5 cut(s)	17, 555, 676, 822, 861
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	2 cut(s)	21, 259
VneI	GTGCAC	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	4
ZrmI	AGTACT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.