Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001311.1

Orthogroup ID

OG0001740

Physical Location & Seq

Genomic Coordinates Reverse (-)

78689 .. 82520

Gene Structure 3832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001311.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atggctgggggtctgaaactgcctatcatagacttgtcctcaccggaccgcaactcctccgccagtttaatccgtcaggcttgtatagagtgtggtttcttttacttggtgaatcatggtgttgaggaggagttacttggccaagtgtttgatcagagcagtaggtttttttcacttcctttggaagttaagtccagattgacgcgcaaacaaaacagaggctacacaccgctctttgctgagaaccttgaccccagttccagctgcaaaggtgattcaaaagaaagtttttattttggtccttttgaagacgagactcaaaataagttgaatcaatggcctccagaagatatccttccatcctggcgacctacaatggaatcctactataaaaaagttctttctgctgggaaaagagtactatccctgattgccctggctttgaacctggatgaggatttttttgagaaagtgggggatctaaataaacacacagcagttcttcgccttttgcactatccaggtcaactgggatcatctgatgaagaagtacttggtgcttctgctcattcagattatgggatgatcacactcctggcatccaatggtgtcccaggacttcaggtttgtagggaaaaatctaagcaaccacgggtttgggaagatgttcttcacatagatggagcattcattgttaacattggggatttgatggagaggtggactaattgtttgttccagtcaacggtgcacagggttataccagcaggacaagaacgctactctgtggttttcttcttagaacccaatgaagaaactctggtagaatgcctggcaagttgttgcaatgaatcattgccgccaagatttcctcccatccgcagcggggactacctgaaagagcggtttagacatacttatggctcatctgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

311

Amino Acids

35.08

Weight (kDa)

5.31

Isoelectric Point (pI)

59.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16770
fragaria_vesca	FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520
malus_domestica	MD00G1169400.v1.1 MD00G1169500.v1.1 MD04G1060700.v1.1 MD04G1060800.v1.1 MD11G1277300.v1.1
prunus_persica	Prupe.5G064700_v2.0.a1
pyrus_communis	pycom04g05460 pycom04g05470
rosa_chinensis	RchiOBHm_Chr7g0204121 RchiOBHm_Chr7g0204131
rosa_laevigata	RLG00000003486 RLG00000003488
rosa_multiflora	Rmu_sc0001311.1_g000016 Rmu_sc0001311.1_g000018
rosa_roxburghii	Rroxscaffold_3G00253320 Rroxscaffold_3G00253340
rosa_rugosa	Rorug07G0080800 Rorug07G0080900 Rorug07G0081000
rosa_samantha	Rh7AG210800 Rh7BG209300 Rh7BG209500 Rh7CG223200 Rh7CG223400 Rh7DG217500 Rh7DG217700
rosa_wichuraiana	Rw7G018340 Rw7G018350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	232, 904
AccII	CGCG	1 cut(s)	205
AciI	CCGC	7 cut(s)	49, 60, 230, 860, 880, 885, 904
AclWI	GGATC	2 cut(s)	486, 541
AcoI	YGGCCR	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	2 cut(s)	420, 552
AfiI	CCNNNNNNNGG	3 cut(s)	454, 745, 886
AgsI	TTSAA	4 cut(s)	279, 308, 331, 445
AjnI	CCWGG	7 cut(s)	362, 435, 447, 520, 594, 613, 831
AjuI	GAANNNNNNNTTGG	2 cut(s)	537, 569
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	1 cut(s)	308
Alw44I	GTGCAC	1 cut(s)	749
AlwI	GGATC	2 cut(s)	486, 541
AoxI	GGCC	2 cut(s)	139, 338
ApaLI	GTGCAC	1 cut(s)	749
ApeKI	GCWGC	2 cut(s)	264, 882
ArsI	GACNNNNNNTTYG	4 cut(s)	609, 641, 715, 747
Asp700I	GAANNNNTTC	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	46, 299
AsuHPI	GGTGA	3 cut(s)	33, 121, 284
AvaII	GGWCC	2 cut(s)	46, 299
BaeGI	GKGCMC	1 cut(s)	753
BalI	TGGCCA	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	2 cut(s)	251, 894
BccI	CCATC	4 cut(s)	367, 674, 706, 884
BciT130I	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
BclI	TGATCA	2 cut(s)	151, 585
BcoDI	GTCTC	1 cut(s)	308
BisI	GCNGC	3 cut(s)	265, 860, 883
BlsI	GCNGC	3 cut(s)	266, 861, 884
BmcAI	AGTACT	2 cut(s)	420, 552
Bme1390I	CCNGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
Bme18I	GGWCC	2 cut(s)	46, 299
BmgT120I	GGNCC	2 cut(s)	46, 299
BmrFI	CCNGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
BmrI	ACTGGG	2 cut(s)	249, 539
BmsI	GCATC	1 cut(s)	608
BmuI	ACTGGG	2 cut(s)	249, 539
BpiI	GAAGAC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	435, 613, 650
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	3 cut(s)	454, 745, 886
Bse1I	ACTGG	4 cut(s)	63, 255, 534, 739
Bse3DI	GCAATG	2 cut(s)	853, 854
BseBI	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
BseDI	CCNNGG	3 cut(s)	435, 613, 650
BseGI	GGATG	5 cut(s)	359, 457, 588, 599, 876
BseLI	CCNNNNNNNGG	3 cut(s)	454, 745, 886
BseMI	GCAATG	2 cut(s)	853, 854
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	4 cut(s)	63, 255, 534, 739
BseRI	GAGGAG	3 cut(s)	46, 140, 143
BseSI	GKGCMC	1 cut(s)	753
BseXI	GCAGC	2 cut(s)	251, 894
BseYI	CCCAGC	2 cut(s)	5, 407
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	141, 340
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	2 cut(s)	596, 902
BslI	CCNNNNNNNGG	3 cut(s)	454, 745, 886
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	2 cut(s)	596, 902
BsmI	GAATGC	2 cut(s)	686, 833
BsnI	GGCC	2 cut(s)	141, 340
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	4 cut(s)	151, 478, 533, 585
BspACI	CCGC	7 cut(s)	49, 60, 230, 860, 880, 885, 904
BspANI	GGCC	2 cut(s)	141, 340
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	205
BspPI	GGATC	2 cut(s)	486, 541
BsrBI	CCGCTC	2 cut(s)	232, 904
BsrDI	GCAATG	2 cut(s)	853, 854
BsrI	ACTGG	4 cut(s)	63, 255, 534, 739
BssECI	CCNNGG	3 cut(s)	435, 613, 650
BssMI	GATC	4 cut(s)	151, 478, 533, 585
Bst2UI	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
Bst4CI	ACNGT	1 cut(s)	748
BstDEI	CTNAG	3 cut(s)	240, 642, 799
BstDSI	CCRYGG	1 cut(s)	650
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	5 cut(s)	359, 457, 588, 599, 876
BstFNI	CGCG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	4 cut(s)	154, 481, 536, 588
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	4 cut(s)	151, 478, 533, 585
BstNI	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
BstSCI	CCNGG	7 cut(s)	362, 435, 447, 520, 594, 613, 831
BstSLI	GKGCMC	1 cut(s)	753
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	251, 894
BstV2I	GAAGAC	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	478
BstXI	CCANNNNNNTGG	1 cut(s)	657
BstYI	RGATCY	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	141, 340
BtgI	CCRYGG	1 cut(s)	650
BtsCI	GGATG	5 cut(s)	359, 457, 588, 599, 876
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	46, 299
CpoI	CGGWCCG	1 cut(s)	46
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	419, 551
CspI	CGGWCCG	1 cut(s)	46
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	8 cut(s)	5, 80, 141, 222, 264, 340, 440, 924
CviKI_1	RGCY	8 cut(s)	5, 80, 141, 222, 264, 340, 440, 924
CviQI	GTAC	2 cut(s)	419, 551
DdeI	CTNAG	3 cut(s)	240, 642, 799
DpnI	GATC	4 cut(s)	153, 480, 535, 587
DpnII	GATC	4 cut(s)	151, 478, 533, 585
EaeI	YGGCCR	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	49
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	46, 299
Eco57I	CTGAAG	1 cut(s)	605
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRII	CCWGG	7 cut(s)	362, 435, 447, 520, 594, 613, 831
EcoRV	GATATC	1 cut(s)	352
FaeI	CATG	1 cut(s)	119
FaiI	YATR	9 cut(s)	29, 86, 117, 390, 579, 677, 761, 915, 921
FalI	AAGNNNNNCTT	6 cut(s)	339, 371, 537, 569, 654, 686
FaqI	GGGAC	2 cut(s)	596, 902
FatI	CATG	1 cut(s)	115
FauI	CCCGC	1 cut(s)	878
FbaI	TGATCA	2 cut(s)	151, 585
Fnu4HI	GCNGC	3 cut(s)	265, 860, 883
FokI	GGATG	5 cut(s)	346, 464, 586, 595, 863
Fsp4HI	GCNGC	3 cut(s)	265, 860, 883
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	3 cut(s)	265, 860, 883
GsaI	CCCAGC	2 cut(s)	9, 411
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	141, 340
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HincII	GTYRAC	3 cut(s)	527, 697, 744
HindII	GTYRAC	3 cut(s)	527, 697, 744
HinfI	GANTC	6 cut(s)	112, 275, 316, 331, 380, 851
HpaI	GTTAAC	1 cut(s)	697
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	3 cut(s)	33, 121, 284
Hpy166II	GTNNAC	5 cut(s)	527, 697, 723, 744, 751
Hpy188I	TCNGA	5 cut(s)	15, 156, 541, 574, 931
Hpy188III	TCNNGA	2 cut(s)	195, 344
Hpy8I	GTNNAC	5 cut(s)	527, 697, 723, 744, 751
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	1 cut(s)	748
HpyCH4V	TGCA	4 cut(s)	267, 514, 751, 846
HpyF3I	CTNAG	3 cut(s)	240, 642, 799
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	1 cut(s)	205
Ksp22I	TGATCA	2 cut(s)	151, 585
KspAI	GTTAAC	1 cut(s)	697
Kzo9I	GATC	4 cut(s)	151, 478, 533, 585
LmnI	GCTCC	1 cut(s)	683
Lsp1109I	GCAGC	2 cut(s)	251, 894
LweI	GCATC	1 cut(s)	608
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	4 cut(s)	153, 480, 535, 587
MbiI	CCGCTC	2 cut(s)	232, 904
MboI	GATC	4 cut(s)	151, 478, 533, 585
MboII	GAAGA	8 cut(s)	320, 359, 494, 557, 662, 674, 787, 824
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	753
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	1 cut(s)	727
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	9 cut(s)	49, 67, 118, 121, 212, 351, 448, 711, 882
Mox20I	TGGCCA	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	666
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	3 cut(s)	68, 189, 696
MslI	CAYNNNNRTG	3 cut(s)	678, 918, 931
Msp20I	TGGCCA	1 cut(s)	141
MspA1I	CMGCKG	2 cut(s)	264, 885
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
Mva1269I	GAATGC	2 cut(s)	686, 833
MvaI	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
MvnI	CGCG	1 cut(s)	205
NdeII	GATC	4 cut(s)	151, 478, 533, 585
NlaIII	CATG	1 cut(s)	119
PctI	GAATGC	2 cut(s)	686, 833
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	5 cut(s)	112, 275, 331, 380, 851
PkrI	GCNGC	3 cut(s)	266, 861, 884
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Psp6I	CCWGG	7 cut(s)	362, 435, 447, 520, 594, 613, 831
PspFI	CCCAGC	2 cut(s)	5, 407
PspGI	CCWGG	7 cut(s)	362, 435, 447, 520, 594, 613, 831
PspPI	GGNCC	2 cut(s)	46, 299
PsuI	RGATCY	1 cut(s)	478
PvuII	CAGCTG	1 cut(s)	264
RsaI	GTAC	2 cut(s)	420, 552
RsaNI	GTAC	2 cut(s)	419, 551
RseI	CAYNNNNRTG	3 cut(s)	678, 918, 931
Rsr2I	CGGWCCG	1 cut(s)	46
RsrII	CGGWCCG	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	68, 189, 696
SatI	GCNGC	3 cut(s)	265, 860, 883
Sau3AI	GATC	4 cut(s)	151, 478, 533, 585
Sau96I	GGNCC	2 cut(s)	46, 299
ScaI	AGTACT	2 cut(s)	420, 552
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
SduI	GDGCHC	1 cut(s)	753
SfaNI	GCATC	1 cut(s)	608
SinI	GGWCC	2 cut(s)	46, 299
SmiMI	CAYNNNNRTG	3 cut(s)	678, 918, 931
Sse9I	AATT	1 cut(s)	727
SsiI	CCGC	7 cut(s)	49, 60, 230, 860, 880, 885, 904
StyD4I	CCNGG	7 cut(s)	362, 435, 447, 520, 594, 613, 831
TaaI	ACNGT	1 cut(s)	748
TasI	AATT	1 cut(s)	727
TatI	WGTACW	2 cut(s)	418, 550
TauI	GCSGC	1 cut(s)	862
TfiI	GAWTC	5 cut(s)	112, 275, 331, 380, 851
Tru1I	TTAA	3 cut(s)	68, 189, 696
Tru9I	TTAA	3 cut(s)	68, 189, 696
TseI	GCWGC	2 cut(s)	264, 882
TspDTI	ATGAA	4 cut(s)	558, 679, 825, 864
TspGWI	ACGGA	1 cut(s)	62
VneI	GTGCAC	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	46, 299
XagI	CCTNNNNNAGG	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	666
ZrmI	AGTACT	2 cut(s)	420, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.