Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001740

Physical Location & Seq

Genomic Coordinates Forward (+)

38974046 .. 38978226

Gene Structure 4181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1169500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACGACGGCGGCGGTGAACCTGCCGATCATTGACTTGTCCTCATCAGATTCCATCTCCTCCGCCAATTCAATCCGTCAGGCATGCATAGAGTGTGGTTTCTTCTACCTGGTGAATCATGGCGTCGAGGAAGAGCTGTTTGCAGAGCTGTTCGATCGGAGCAGCAACTTCTTTTCGCTTCCTTTGGAAGATAAGTTGAAATTTTCTCGCAAGCATAACAGAGGCTACACCGCACTATTTTCGGAGAATCTCGACTTCGCTTCCAGCTCCAAAGGTGACTCAAAAGAGAGTTTTTATGTTGGCCCTTTAGATGACCCAACTCAAAGTAATTTGAACCAATGGCCTCCAGAAGATATCCTTCCATCTTGGAGGCCTGCAGTGGAATCGTACTATAGAAAAGTAATGTCTGCTGGAAAAAGATTAATCTCTGTTATTGCCCTGGCTTTAAACCTGGATGAGGACTTTTTCGAGAAAGTGGGGGCAATGGATAAACCAAAGGGTTTTCTTCGACTTTTGCACTATCCAGGTGAGCTGGGATCAACTGATGAAGAAATATATGGTGCTTCTGCTCATTCAGATTATGGCATGATCACACTCCTTGCATCCAATGGAGTTCCTGGACTTCAGGCATGCTTTTTGGACAAATCTAAGCAACCTCGAATCTGGGAAGATGTTCTTCACATAGATGGGGCATTCATTGTTAACATTGGGGACATGATGGAGAGGTGGACTAATTGTTTGTTCAGGTCAACACTGCATAGAGTGATGCCAACAGGACAAGAACGCTACTCTGTGGCTTTCTTCATGGATCCCAATGACGATTGTGTGGTGGAATGTCTGAAAAGTTGTTGCAGTGAAGCATCACCGCCAAGATTTCCTCCCGTCCGCAGTGGGGACTACCTGGAAGAGCGTTTTCGGCTTACATATGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

312

Amino Acids

35.01

Weight (kDa)

4.9

Isoelectric Point (pI)

57.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	8 - 117	2.5e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	169 - 271	2.7e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16770
fragaria_vesca	FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520
malus_domestica	MD00G1169400.v1.1 MD00G1169500.v1.1 MD04G1060700.v1.1 MD04G1060800.v1.1 MD11G1277300.v1.1
prunus_persica	Prupe.5G064700_v2.0.a1
pyrus_communis	pycom04g05460 pycom04g05470
rosa_chinensis	RchiOBHm_Chr7g0204121 RchiOBHm_Chr7g0204131
rosa_laevigata	RLG00000003486 RLG00000003488
rosa_multiflora	Rmu_sc0001311.1_g000016 Rmu_sc0001311.1_g000018
rosa_roxburghii	Rroxscaffold_3G00253320 Rroxscaffold_3G00253340
rosa_rugosa	Rorug07G0080800 Rorug07G0080900 Rorug07G0081000
rosa_samantha	Rh7AG210800 Rh7BG209300 Rh7BG209500 Rh7CG223200 Rh7CG223400 Rh7DG217500 Rh7DG217700
rosa_wichuraiana	Rw7G018340 Rw7G018350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AciI	CCGC	6 cut(s)	11, 14, 63, 231, 866, 886
AclWI	GGATC	3 cut(s)	544, 803, 816
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	608
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	457, 892
AgsI	TTSAA	3 cut(s)	72, 199, 334
AjnI	CCWGG	6 cut(s)	108, 438, 450, 523, 616, 900
AluBI	AGCT	4 cut(s)	136, 148, 267, 532
AluI	AGCT	4 cut(s)	136, 148, 267, 532
AlwI	GGATC	3 cut(s)	544, 803, 816
AoxI	GGCC	3 cut(s)	301, 341, 371
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	200
ArsI	GACNNNNNNTTYG	2 cut(s)	721, 753
AseI	ATTAAT	1 cut(s)	422
Asp700I	GAANNNNTTC	1 cut(s)	672
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	5 cut(s)	28, 124, 287, 539, 855
BamHI	GGATCC	1 cut(s)	808
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	4 cut(s)	62, 370, 680, 712
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	4 cut(s)	222, 256, 366, 400
BciT130I	CCWGG	6 cut(s)	110, 440, 452, 525, 618, 902
BclI	TGATCA	1 cut(s)	588
BfmI	CTRYAG	2 cut(s)	375, 391
BfuAI	ACCTGC	1 cut(s)	30
BisI	GCNGC	2 cut(s)	12, 163
BlsI	GCNGC	2 cut(s)	13, 164
Bme1390I	CCNGG	6 cut(s)	110, 440, 452, 525, 618, 902
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	810
BmrFI	CCNGG	6 cut(s)	110, 440, 452, 525, 618, 902
BmsI	GCATC	3 cut(s)	611, 756, 869
BpmI	CTGGAG	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	2 cut(s)	457, 892
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	6 cut(s)	110, 440, 452, 525, 618, 902
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	2 cut(s)	460, 602
BseLI	CCNNNNNNNGG	2 cut(s)	457, 892
BseMI	GCAATG	1 cut(s)	489
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	174
BseYI	CCCAGC	1 cut(s)	532
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	3 cut(s)	303, 343, 373
BsiEI	CGRYCG	1 cut(s)	157
BslFI	GGGAC	2 cut(s)	725, 908
BslI	CCNNNNNNNGG	2 cut(s)	457, 892
BsmFI	GGGAC	2 cut(s)	725, 908
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	3 cut(s)	303, 343, 373
Bsp143I	GATC	5 cut(s)	27, 154, 536, 588, 808
BspACI	CCGC	6 cut(s)	11, 14, 63, 231, 866, 886
BspANI	GGCC	3 cut(s)	303, 343, 373
BspLI	GGNNCC	1 cut(s)	810
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	3 cut(s)	544, 803, 816
BspQI	GCTCTTC	2 cut(s)	126, 900
BsrDI	GCAATG	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	5 cut(s)	27, 154, 536, 588, 808
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	6 cut(s)	110, 440, 452, 525, 618, 902
Bst6I	CTCTTC	2 cut(s)	126, 900
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	4 cut(s)	85, 212, 375, 631
BstDEI	CTNAG	1 cut(s)	648
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	2 cut(s)	460, 602
BstKTI	GATC	5 cut(s)	30, 157, 539, 591, 811
BstMBI	GATC	5 cut(s)	27, 154, 536, 588, 808
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	916
BstNI	CCWGG	6 cut(s)	110, 440, 452, 525, 618, 902
BstNSI	RCATGY	2 cut(s)	87, 633
BstSCI	CCNGG	6 cut(s)	108, 438, 450, 523, 616, 900
BstSFI	CTRYAG	2 cut(s)	375, 391
BstV1I	GCAGC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	808
BsuRI	GGCC	3 cut(s)	303, 343, 373
BtsCI	GGATG	2 cut(s)	460, 602
BtsI	GCAGTG	4 cut(s)	384, 752, 859, 895
BtsIMutI	CAGTG	4 cut(s)	384, 752, 859, 895
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	4 cut(s)	85, 212, 375, 631
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	6 cut(s)	84, 119, 586, 630, 715, 805
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	5 cut(s)	29, 156, 538, 590, 810
DpnII	GATC	5 cut(s)	27, 154, 536, 588, 808
DraI	TTTAAA	1 cut(s)	447
Eam1104I	CTCTTC	2 cut(s)	126, 900
EarI	CTCTTC	2 cut(s)	126, 900
EciI	GGCGGA	1 cut(s)	52
Eco147I	AGGCCT	1 cut(s)	373
Eco32I	GATATC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	608
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoRII	CCWGG	6 cut(s)	108, 438, 450, 523, 616, 900
EcoRV	GATATC	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	89
FaeI	CATG	6 cut(s)	87, 122, 589, 633, 718, 808
FalI	AAGNNNNNCTT	4 cut(s)	342, 374, 660, 692
FaqI	GGGAC	2 cut(s)	725, 908
FatI	CATG	6 cut(s)	83, 118, 585, 629, 714, 804
FauNDI	CATATG	1 cut(s)	925
FbaI	TGATCA	1 cut(s)	588
Fnu4HI	GCNGC	2 cut(s)	12, 163
FokI	GGATG	2 cut(s)	467, 589
Fsp4HI	GCNGC	2 cut(s)	12, 163
GluI	GCNGC	2 cut(s)	12, 163
GsaI	CCCAGC	1 cut(s)	536
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	3 cut(s)	303, 343, 373
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	6 cut(s)	87, 122, 589, 633, 718, 808
HincII	GTYRAC	2 cut(s)	703, 750
HindII	GTYRAC	2 cut(s)	703, 750
HinfI	GANTC	6 cut(s)	50, 115, 247, 278, 383, 660
HpaI	GTTAAC	1 cut(s)	703
HphI	GGTGA	5 cut(s)	28, 124, 287, 539, 855
Hpy166II	GTNNAC	4 cut(s)	19, 703, 729, 750
Hpy188I	TCNGA	5 cut(s)	49, 159, 244, 577, 840
Hpy188III	TCNNGA	3 cut(s)	251, 347, 469
Hpy8I	GTNNAC	4 cut(s)	19, 703, 729, 750
Hpy99I	CGWCG	2 cut(s)	10, 128
HpyAV	CCTTC	1 cut(s)	368
HpyCH4V	TGCA	8 cut(s)	87, 143, 377, 517, 602, 757, 852, 929
HpyF10VI	GCNNNNNNNGC	1 cut(s)	916
HpyF3I	CTNAG	1 cut(s)	648
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	6 cut(s)	87, 122, 589, 633, 718, 808
Ksp22I	TGATCA	1 cut(s)	588
KspAI	GTTAAC	1 cut(s)	703
Kzo9I	GATC	5 cut(s)	27, 154, 536, 588, 808
LguI	GCTCTTC	2 cut(s)	126, 900
LmnI	GCTCC	2 cut(s)	159, 272
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	3 cut(s)	611, 756, 869
MabI	ACCWGGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	5 cut(s)	29, 156, 538, 590, 810
MboI	GATC	5 cut(s)	27, 154, 536, 588, 808
MflI	RGATCY	1 cut(s)	808
MluCI	AATT	4 cut(s)	67, 200, 328, 733
MlyI	GAGTC	1 cut(s)	272
Mph1103I	ATGCAT	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	4 cut(s)	422, 446, 702, 934
MslI	CAYNNNNRTG	1 cut(s)	684
MspR9I	CCNGG	6 cut(s)	110, 440, 452, 525, 618, 902
Mva1269I	GAATGC	1 cut(s)	692
MvaI	CCWGG	6 cut(s)	110, 440, 452, 525, 618, 902
MwoI	GCNNNNNNNGC	1 cut(s)	916
NdeI	CATATG	1 cut(s)	925
NdeII	GATC	5 cut(s)	27, 154, 536, 588, 808
NlaIII	CATG	6 cut(s)	87, 122, 589, 633, 718, 808
NlaIV	GGNNCC	1 cut(s)	810
NmuCI	GTSAC	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	89
NspI	RCATGY	2 cut(s)	87, 633
PaeI	GCATGC	2 cut(s)	87, 633
PceI	AGGCCT	1 cut(s)	373
PciSI	GCTCTTC	2 cut(s)	126, 900
PctI	GAATGC	1 cut(s)	692
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	5 cut(s)	50, 115, 247, 383, 660
PfoI	TCCNGGA	1 cut(s)	616
PkrI	GCNGC	2 cut(s)	13, 164
Ple19I	CGATCG	1 cut(s)	157
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
PshBI	ATTAAT	1 cut(s)	422
Psp6I	CCWGG	6 cut(s)	108, 438, 450, 523, 616, 900
PspFI	CCCAGC	1 cut(s)	532
PspGI	CCWGG	6 cut(s)	108, 438, 450, 523, 616, 900
PspN4I	GGNNCC	1 cut(s)	810
PspPI	GGNCC	1 cut(s)	302
PstI	CTGCAG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	808
PvuI	CGATCG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	684
SapI	GCTCTTC	2 cut(s)	126, 900
SaqAI	TTAA	4 cut(s)	422, 446, 702, 934
SatI	GCNGC	2 cut(s)	12, 163
Sau3AI	GATC	5 cut(s)	27, 154, 536, 588, 808
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	6 cut(s)	110, 440, 452, 525, 618, 902
SexAI	ACCWGGT	1 cut(s)	108
SfaNI	GCATC	3 cut(s)	611, 756, 869
SfcI	CTRYAG	2 cut(s)	375, 391
SmiMI	CAYNNNNRTG	1 cut(s)	684
SphI	GCATGC	2 cut(s)	87, 633
Sse9I	AATT	4 cut(s)	67, 200, 328, 733
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	6 cut(s)	11, 14, 63, 231, 866, 886
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	6 cut(s)	108, 438, 450, 523, 616, 900
TaqI	TCGA	6 cut(s)	126, 153, 252, 468, 508, 658
TasI	AATT	4 cut(s)	67, 200, 328, 733
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	5 cut(s)	50, 115, 247, 383, 660
Tru1I	TTAA	4 cut(s)	422, 446, 702, 934
Tru9I	TTAA	4 cut(s)	422, 446, 702, 934
TscAI	CASTG	4 cut(s)	384, 759, 859, 895
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	3 cut(s)	561, 685, 793
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	4 cut(s)	384, 759, 859, 895
VspI	ATTAAT	1 cut(s)	422
XagI	CCTNNNNNAGG	1 cut(s)	455
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	2 cut(s)	87, 633
XmnI	GAANNNNTTC	1 cut(s)	672
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.