pycom04g05460

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
5249948 .. 5256144
6197 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g05460.2

Sequence Viewer

Length: 288 bp
ATGACGACGGAGGCGGTGAACCTGCCGATCATTGACTTGTCCTCATCAGATTCCATCTCCTCCGCCCATTCAATCCGTCAGGCATGCATAGAGTATGGTTTCTTCTACCTGGTGAATCATGGCGTCGAGGAAGAGCTGTTTGCAGAGGTGTTCGATCGGAGCAGCAACTTCTTTTCGCTTCCTTTGGAAGATAAGTTGAAATTGACTCGCAAGCACCACAGAGCACCACAGAGGCTACACCCCACTATTTTCGGAGAATCTCGACTTCGCTTCCAGCTCCAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

11.02

Weight (kDa)

6.5

Isoelectric Point (pI)

58.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 30
AciI CCGC 2 cut(s) 14, 63
AcyI GRCGYC 1 cut(s) 123
AgsI TTSAA 2 cut(s) 72, 199
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 2 cut(s) 136, 277
AluI AGCT 2 cut(s) 136, 277
Alw21I GWGCWC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 162
AsuHPI GGTGA 2 cut(s) 28, 124
BarI GAAGNNNNNNTAC 2 cut(s) 86, 118
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 30
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 123
BseBI CCWGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 2 cut(s) 27, 154
BspACI CCGC 2 cut(s) 14, 63
BspMI ACCTGC 1 cut(s) 30
BspQI GCTCTTC 1 cut(s) 126
BssMI GATC 2 cut(s) 27, 154
BssNI GRCGYC 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 85, 212
BstKTI GATC 2 cut(s) 30, 157
BstMBI GATC 2 cut(s) 27, 154
BstMCI CGRYCG 1 cut(s) 157
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 174
BveI ACCTGC 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 85, 212
CseI GACGC 1 cut(s) 112
CsiI ACCWGGT 1 cut(s) 108
CviAII CATG 2 cut(s) 84, 119
CviJI RGCY 3 cut(s) 136, 235, 277
CviKI_1 RGCY 3 cut(s) 136, 235, 277
DpnI GATC 2 cut(s) 29, 156
DpnII GATC 2 cut(s) 27, 154
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
EciI GGCGGA 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 89
FaeI CATG 2 cut(s) 87, 122
FaiI YATR 4 cut(s) 85, 89, 96, 120
FatI CATG 2 cut(s) 83, 118
Fnu4HI GCNGC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 163
HgaI GACGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 2 cut(s) 87, 122
HinfI GANTC 4 cut(s) 50, 115, 205, 257
HphI GGTGA 2 cut(s) 28, 124
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 49, 159, 254
Hpy188III TCNNGA 1 cut(s) 261
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 2 cut(s) 10, 128
HpyCH4V TGCA 2 cut(s) 87, 143
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 2 cut(s) 87, 122
Kzo9I GATC 2 cut(s) 27, 154
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 2 cut(s) 159, 282
LpnPI CCDG 4 cut(s) 35, 65, 95, 122
Lsp1109I GCAGC 1 cut(s) 174
MabI ACCWGGT 1 cut(s) 108
MalI GATC 2 cut(s) 29, 156
MboI GATC 2 cut(s) 27, 154
MboII GAAGA 3 cut(s) 94, 143, 200
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 6 cut(s) 4, 52, 70, 121, 139, 225
Mph1103I ATGCAT 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
NdeII GATC 2 cut(s) 27, 154
NlaIII CATG 2 cut(s) 87, 122
NsiI ATGCAT 1 cut(s) 89
NspI RCATGY 1 cut(s) 87
PaeI GCATGC 1 cut(s) 87
PciSI GCTCTTC 1 cut(s) 126
PfeI GAWTC 3 cut(s) 50, 115, 257
PkrI GCNGC 1 cut(s) 164
Ple19I CGATCG 1 cut(s) 157
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PvuI CGATCG 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 126
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 2 cut(s) 27, 154
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 226
SetI ASST 6 cut(s) 24, 111, 138, 150, 279, 287
SexAI ACCWGGT 1 cut(s) 108
SphI GCATGC 1 cut(s) 87
Sse9I AATT 1 cut(s) 200
SsiI CCGC 2 cut(s) 14, 63
StyD4I CCNGG 1 cut(s) 108
TaqI TCGA 3 cut(s) 126, 153, 262
TasI AATT 1 cut(s) 200
TfiI GAWTC 3 cut(s) 50, 115, 257
TseI GCWGC 1 cut(s) 162
TspGWI ACGGA 2 cut(s) 23, 65
XceI RCATGY 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.