Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001740

Physical Location & Seq

Genomic Coordinates Reverse (-)

20600353 .. 20601886

Gene Structure 1534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG223200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAGAGGGTCTGAAGCTGCCCATCATAGACTTATCCTCACCGGACCGCACCTCCTCCGCCAGTTTAATCCGTCAGGCTTGCATAGGGTGTGGTTTCTTTTACTTGGTTAATCATGGTGTTGAGGAAGAGTTACTTGGCCAAGTGTTTGATCAGAGCAGTAAGTTTTTTTCACTTCCTTTGGAAGTTAAGTCCAAATTGGCGCACAAACAAAACAGAGGCTATACACCACTATTTGCTGAGAACCTTGACCCCACTGCCAGCTCCAAAGGTGATTCAAAAGAGAGTTTTTACATTGGCCCTTTAGAAGACGTAACTCAAAATAAGTTGAATCAATGGCCTTCAAAAGATATCCTTCCATCCTGGAGACCTATAATGGAATCCTACTATAAAAAAGTTCTTTCCGCTGGGAAAAGATTATTATCTCTGATTGCCCTGGCTTTGAACCTGGATGAGGATTTTTTTGAGAAAGTGGGGGGTCTGAATAAACACACAGCACTTCTTCGCCTTTTGCACTACCCAGGTCAACTGGGATCATCTGATGAAGAAGTACTTGGTGCTTCTGCTCATTCAGATTATGGAACAGTCACACTCCTGGCATCCAATGGTGTCCCAGGACTTCAGGTATGTTTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

212

Amino Acids

23.33

Weight (kDa)

5.74

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	7 - 115	1.3e-30	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16770
fragaria_vesca	FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520
malus_domestica	MD00G1169400.v1.1 MD00G1169500.v1.1 MD04G1060700.v1.1 MD04G1060800.v1.1 MD11G1277300.v1.1
prunus_persica	Prupe.5G064700_v2.0.a1
pyrus_communis	pycom04g05460 pycom04g05470
rosa_chinensis	RchiOBHm_Chr7g0204121 RchiOBHm_Chr7g0204131
rosa_laevigata	RLG00000003486 RLG00000003488
rosa_multiflora	Rmu_sc0001311.1_g000016 Rmu_sc0001311.1_g000018
rosa_roxburghii	Rroxscaffold_3G00253320 Rroxscaffold_3G00253340
rosa_rugosa	Rorug07G0080800 Rorug07G0080900 Rorug07G0081000
rosa_samantha	Rh7AG210800 Rh7BG209300 Rh7BG209500 Rh7CG223200 Rh7CG223400 Rh7DG217500 Rh7DG217700
rosa_wichuraiana	Rw7G018340 Rw7G018350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	49, 60, 405
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	1 cut(s)	139
AcuI	CTGAAG	2 cut(s)	35, 605
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	4 cut(s)	279, 331, 345, 445
AjnI	CCWGG	6 cut(s)	362, 435, 447, 520, 594, 613
AjuI	GAANNNNNNNTTGG	4 cut(s)	120, 152, 537, 569
AluBI	AGCT	2 cut(s)	19, 264
AluI	AGCT	2 cut(s)	19, 264
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	541
AoxI	GGCC	3 cut(s)	139, 298, 338
ApeKI	GCWGC	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	2 cut(s)	46, 299
AsuHPI	GGTGA	2 cut(s)	33, 284
AvaII	GGWCC	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	6
BccI	CCATC	2 cut(s)	32, 367
BciT130I	CCWGG	6 cut(s)	364, 437, 449, 522, 596, 615
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	637
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
BmcAI	AGTACT	1 cut(s)	552
Bme1390I	CCNGG	6 cut(s)	364, 437, 449, 522, 596, 615
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	46, 299
BmrFI	CCNGG	6 cut(s)	364, 437, 449, 522, 596, 615
BmrI	ACTGGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	608
BmuI	ACTGGG	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	421
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	3 cut(s)	435, 520, 613
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	2 cut(s)	63, 534
Bse8I	GATNNNNATC	1 cut(s)	421
BseBI	CCWGG	6 cut(s)	364, 437, 449, 522, 596, 615
BseDI	CCNNGG	3 cut(s)	435, 520, 613
BseGI	GGATG	3 cut(s)	359, 457, 599
BseJI	GATNNNNATC	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	63, 534
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	6
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	3 cut(s)	141, 300, 340
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	3 cut(s)	141, 300, 340
Bso31I	GGTCTC	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	151, 533
BspACI	CCGC	3 cut(s)	49, 60, 405
BspANI	GGCC	3 cut(s)	141, 300, 340
BspCNI	CTCAG	1 cut(s)	232
BspPI	GGATC	1 cut(s)	541
BspTNI	GGTCTC	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	63, 534
BssECI	CCNNGG	3 cut(s)	435, 520, 613
BssMI	GATC	2 cut(s)	151, 533
Bst2UI	CCWGG	6 cut(s)	364, 437, 449, 522, 596, 615
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	82, 262
BstDEI	CTNAG	1 cut(s)	240
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	3 cut(s)	359, 457, 599
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	2 cut(s)	154, 536
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	2 cut(s)	151, 533
BstNI	CCWGG	6 cut(s)	364, 437, 449, 522, 596, 615
BstSCI	CCNGG	6 cut(s)	362, 435, 447, 520, 594, 613
BstV1I	GCAGC	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	141, 300, 340
BtsCI	GGATG	3 cut(s)	359, 457, 599
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	82, 262
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	46, 299
CpoI	CGGWCCG	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	551
CspI	CGGWCCG	1 cut(s)	46
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	8 cut(s)	19, 80, 141, 222, 264, 300, 340, 440
CviKI_1	RGCY	8 cut(s)	19, 80, 141, 222, 264, 300, 340, 440
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	153, 535
DpnII	GATC	2 cut(s)	151, 533
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	361
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	35, 605
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRII	CCWGG	6 cut(s)	362, 435, 447, 520, 594, 613
EcoRV	GATATC	1 cut(s)	352
FaeI	CATG	1 cut(s)	119
FaiI	YATR	8 cut(s)	29, 86, 117, 225, 374, 390, 579, 628
FalI	AAGNNNNNCTT	6 cut(s)	120, 152, 339, 371, 537, 569
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	3 cut(s)	346, 464, 586
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	637
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	20
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	385
HaeIII	GGCC	3 cut(s)	141, 300, 340
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	527
HindII	GTYRAC	1 cut(s)	527
HinfI	GANTC	3 cut(s)	275, 331, 380
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	33, 284
Hpy166II	GTNNAC	1 cut(s)	527
Hpy188I	TCNGA	6 cut(s)	15, 156, 429, 483, 541, 574
Hpy8I	GTNNAC	1 cut(s)	527
HpyAV	CCTTC	2 cut(s)	351, 365
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	2 cut(s)	84, 514
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	151, 533
LmnI	GCTCC	1 cut(s)	269
Lsp1109I	GCAGC	1 cut(s)	6
LweI	GCATC	1 cut(s)	608
MaeI	CTAG	1 cut(s)	637
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	132, 313, 586
MalI	GATC	2 cut(s)	153, 535
MboI	GATC	2 cut(s)	151, 533
MboII	GAAGA	4 cut(s)	140, 320, 494, 557
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	1 cut(s)	197
MluNI	TGGCCA	1 cut(s)	141
MnlI	CCTC	6 cut(s)	49, 64, 67, 118, 212, 448
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	3 cut(s)	68, 111, 189
Msp20I	TGGCCA	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	6 cut(s)	364, 437, 449, 522, 596, 615
MvaI	CCWGG	6 cut(s)	364, 437, 449, 522, 596, 615
NdeII	GATC	2 cut(s)	151, 533
NlaIII	CATG	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	586
PfeI	GAWTC	3 cut(s)	275, 331, 380
PfoI	TCCNGGA	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	21
Psp6I	CCWGG	6 cut(s)	362, 435, 447, 520, 594, 613
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	6 cut(s)	362, 435, 447, 520, 594, 613
PspPI	GGNCC	2 cut(s)	46, 299
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
Rsr2I	CGGWCCG	1 cut(s)	46
RsrII	CGGWCCG	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	68, 111, 189
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	151, 533
Sau96I	GGNCC	2 cut(s)	46, 299
ScaI	AGTACT	1 cut(s)	552
ScrFI	CCNGG	6 cut(s)	364, 437, 449, 522, 596, 615
SfaNI	GCATC	1 cut(s)	608
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	3 cut(s)	49, 60, 405
SspMI	CTAG	1 cut(s)	637
StyD4I	CCNGG	6 cut(s)	362, 435, 447, 520, 594, 613
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	1 cut(s)	315
TasI	AATT	1 cut(s)	197
TatI	WGTACW	1 cut(s)	550
TfiI	GAWTC	3 cut(s)	275, 331, 380
Tru1I	TTAA	3 cut(s)	68, 111, 189
Tru9I	TTAA	3 cut(s)	68, 111, 189
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	1 cut(s)	558
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	46
XagI	CCTNNNNNAGG	1 cut(s)	452
XspI	CTAG	1 cut(s)	637
ZrmI	AGTACT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.