Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001311.1

Orthogroup ID

OG0001740

Physical Location & Seq

Genomic Coordinates Reverse (-)

70943 .. 74964

Gene Structure 4022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001311.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atggcagagggtctgaagctgcccatcatagacttatcctcaccggaccgcacctcctccgccagtttaatccgtcaggcttgcatagggtgtggtttcttttacttggtgaatcatggtgttgaggaagagttacttggccaagtgtttgatcagagcagtaagtttttttcacttcctttggaagttaagtccaaattggcgcgcaaacaaaacagaggctatacaccactatttgctgagaaccttgaccccactgccagctccaaaggtgattcaaaagagagtttttacattggccctttagaagacgttactcaaaataagttgaatcaatggccttcagaagatatccttccatcctggagacctacaatggaatcctactatagaaaagttctttccgctgggaaaagattattatctctgattgccctggctttgaacctggatgaggatttttttgagaaagtggggggtctgaataaacacacagcacttcttcgccttttgcactacccaggtcaactgggatcatctgatgaagaagtacttggtgcttctgctcattcagattatggaacagtcacactcctggcatccaatggtgtcccaggacttcaggtttgtagggaaaaatctaagcaaccacgggtttgggaagatgttattcacatagatggagcattcattgttaacattggggatttgatggagaggtggactaattgtttgttccagtcaacggtgcacagagttataccagcaggacaagaacgctactctgtggctttcttcttagaccccaatgaagactctctggtagaatgcctggcaagttgttgcaatgaatcattgccgccaagatttcctcccatccgcagcggggactacctgaaagagcggtttaggcttacttatggctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

309

Amino Acids

34.5

Weight (kDa)

5.48

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16770
fragaria_vesca	FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520
malus_domestica	MD00G1169400.v1.1 MD00G1169500.v1.1 MD04G1060700.v1.1 MD04G1060800.v1.1 MD11G1277300.v1.1
prunus_persica	Prupe.5G064700_v2.0.a1
pyrus_communis	pycom04g05460 pycom04g05470
rosa_chinensis	RchiOBHm_Chr7g0204121 RchiOBHm_Chr7g0204131
rosa_laevigata	RLG00000003486 RLG00000003488
rosa_multiflora	Rmu_sc0001311.1_g000016 Rmu_sc0001311.1_g000018
rosa_roxburghii	Rroxscaffold_3G00253320 Rroxscaffold_3G00253340
rosa_rugosa	Rorug07G0080800 Rorug07G0080900 Rorug07G0081000
rosa_samantha	Rh7AG210800 Rh7BG209300 Rh7BG209500 Rh7CG223200 Rh7CG223400 Rh7DG217500 Rh7DG217700
rosa_wichuraiana	Rw7G018340 Rw7G018350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	904
AccII	CGCG	1 cut(s)	205
AciI	CCGC	7 cut(s)	49, 60, 405, 860, 880, 885, 904
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	1 cut(s)	139
AcuI	CTGAAG	3 cut(s)	35, 327, 605
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	3 cut(s)	454, 745, 886
AgsI	TTSAA	3 cut(s)	279, 331, 445
AjnI	CCWGG	7 cut(s)	362, 435, 447, 520, 594, 613, 831
AjuI	GAANNNNNNNTTGG	4 cut(s)	120, 152, 537, 569
AluBI	AGCT	2 cut(s)	19, 264
AluI	AGCT	2 cut(s)	19, 264
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	1 cut(s)	361
Alw44I	GTGCAC	1 cut(s)	749
AlwI	GGATC	1 cut(s)	541
AoxI	GGCC	3 cut(s)	139, 298, 338
ApaLI	GTGCAC	1 cut(s)	749
ApeKI	GCWGC	2 cut(s)	19, 882
ArsI	GACNNNNNNTTYG	4 cut(s)	609, 641, 715, 747
AspLEI	GCGC	2 cut(s)	205, 207
AspS9I	GGNCC	2 cut(s)	46, 299
AsuHPI	GGTGA	3 cut(s)	33, 121, 284
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	753
BalI	TGGCCA	1 cut(s)	141
BbsI	GAAGAC	2 cut(s)	315, 819
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	2 cut(s)	6, 894
BccI	CCATC	5 cut(s)	32, 367, 674, 706, 884
BciT130I	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	361
BfmI	CTRYAG	1 cut(s)	388
BisI	GCNGC	3 cut(s)	20, 860, 883
BlsI	GCNGC	3 cut(s)	21, 861, 884
BmcAI	AGTACT	1 cut(s)	552
Bme1390I	CCNGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	46, 299
BmrFI	CCNGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
BmrI	ACTGGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	608
BmuI	ACTGGG	1 cut(s)	539
BpiI	GAAGAC	2 cut(s)	315, 819
BpmI	CTGGAG	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	421
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	4 cut(s)	435, 520, 613, 650
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	3 cut(s)	454, 745, 886
Bse1I	ACTGG	3 cut(s)	63, 534, 739
Bse3DI	GCAATG	2 cut(s)	853, 854
Bse8I	GATNNNNATC	1 cut(s)	421
BseBI	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
BseDI	CCNNGG	4 cut(s)	435, 520, 613, 650
BseGI	GGATG	4 cut(s)	359, 457, 599, 876
BseJI	GATNNNNATC	1 cut(s)	421
BseLI	CCNNNNNNNGG	3 cut(s)	454, 745, 886
BseMI	GCAATG	2 cut(s)	853, 854
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	3 cut(s)	63, 534, 739
BsePI	GCGCGC	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	753
BseXI	GCAGC	2 cut(s)	6, 894
BseYI	CCCAGC	1 cut(s)	407
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	3 cut(s)	141, 300, 340
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	2 cut(s)	596, 902
BslI	CCNNNNNNNGG	3 cut(s)	454, 745, 886
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	2 cut(s)	596, 902
BsmI	GAATGC	2 cut(s)	686, 833
BsnI	GGCC	3 cut(s)	141, 300, 340
Bso31I	GGTCTC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	2 cut(s)	151, 533
BspACI	CCGC	7 cut(s)	49, 60, 405, 860, 880, 885, 904
BspANI	GGCC	3 cut(s)	141, 300, 340
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	205
BspPI	GGATC	1 cut(s)	541
BspTNI	GGTCTC	1 cut(s)	361
BsrBI	CCGCTC	1 cut(s)	904
BsrDI	GCAATG	2 cut(s)	853, 854
BsrI	ACTGG	3 cut(s)	63, 534, 739
BssECI	CCNNGG	4 cut(s)	435, 520, 613, 650
BssHII	GCGCGC	1 cut(s)	203
BssMI	GATC	2 cut(s)	151, 533
Bst2UI	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
Bst4CI	ACNGT	2 cut(s)	586, 748
Bst6I	CTCTTC	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	82, 205, 262
BstDEI	CTNAG	3 cut(s)	240, 642, 799
BstDSI	CCRYGG	1 cut(s)	650
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	4 cut(s)	359, 457, 599, 876
BstFNI	CGCG	1 cut(s)	205
BstHHI	GCGC	2 cut(s)	205, 207
BstKTI	GATC	2 cut(s)	154, 536
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	2 cut(s)	151, 533
BstMWI	GCNNNNNNNGC	1 cut(s)	910
BstNI	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
BstSCI	CCNGG	7 cut(s)	362, 435, 447, 520, 594, 613, 831
BstSFI	CTRYAG	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	753
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	6, 894
BstV2I	GAAGAC	2 cut(s)	315, 819
BstXI	CCANNNNNNTGG	1 cut(s)	657
BsuRI	GGCC	3 cut(s)	141, 300, 340
BtgI	CCRYGG	1 cut(s)	650
BtsCI	GGATG	4 cut(s)	359, 457, 599, 876
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	82, 205, 262
CfoI	GCGC	2 cut(s)	205, 207
Cfr13I	GGNCC	2 cut(s)	46, 299
CpoI	CGGWCCG	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	551
CspI	CGGWCCG	1 cut(s)	46
CviAII	CATG	1 cut(s)	116
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	3 cut(s)	240, 642, 799
DpnI	GATC	2 cut(s)	153, 535
DpnII	GATC	2 cut(s)	151, 533
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	361
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	3 cut(s)	35, 327, 605
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRII	CCWGG	7 cut(s)	362, 435, 447, 520, 594, 613, 831
EcoRV	GATATC	1 cut(s)	352
FaeI	CATG	1 cut(s)	119
FalI	AAGNNNNNCTT	6 cut(s)	120, 152, 339, 371, 537, 569
FaqI	GGGAC	2 cut(s)	596, 902
FatI	CATG	1 cut(s)	115
FauI	CCCGC	1 cut(s)	878
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	20, 860, 883
FokI	GGATG	4 cut(s)	346, 464, 586, 863
Fsp4HI	GCNGC	3 cut(s)	20, 860, 883
GlaI	GCGC	2 cut(s)	204, 206
GluI	GCNGC	3 cut(s)	20, 860, 883
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	385
HaeIII	GGCC	3 cut(s)	141, 300, 340
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	2 cut(s)	205, 207
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	2 cut(s)	203, 205
HinP1I	GCGC	2 cut(s)	203, 205
HincII	GTYRAC	3 cut(s)	527, 697, 744
HindII	GTYRAC	3 cut(s)	527, 697, 744
HinfI	GANTC	6 cut(s)	112, 275, 331, 380, 815, 851
HpaI	GTTAAC	1 cut(s)	697
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	3 cut(s)	33, 121, 284
Hpy166II	GTNNAC	5 cut(s)	527, 697, 723, 744, 751
Hpy188I	TCNGA	7 cut(s)	15, 156, 346, 429, 483, 541, 574
Hpy8I	GTNNAC	5 cut(s)	527, 697, 723, 744, 751
HpyAV	CCTTC	2 cut(s)	351, 365
HpyCH4III	ACNGT	2 cut(s)	586, 748
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	84, 514, 751, 846
HpyF10VI	GCNNNNNNNGC	1 cut(s)	910
HpyF3I	CTNAG	3 cut(s)	240, 642, 799
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	2 cut(s)	203, 205
Ksp22I	TGATCA	1 cut(s)	151
KspAI	GTTAAC	1 cut(s)	697
Kzo9I	GATC	2 cut(s)	151, 533
LmnI	GCTCC	2 cut(s)	269, 683
Lsp1109I	GCAGC	2 cut(s)	6, 894
LweI	GCATC	1 cut(s)	608
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	132, 313, 586
MalI	GATC	2 cut(s)	153, 535
MbiI	CCGCTC	1 cut(s)	904
MboI	GATC	2 cut(s)	151, 533
MboII	GAAGA	8 cut(s)	140, 320, 359, 494, 557, 674, 787, 824
MhlI	GDGCHC	1 cut(s)	753
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	2 cut(s)	197, 727
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	809
MnlI	CCTC	8 cut(s)	49, 64, 67, 118, 212, 448, 711, 882
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	3 cut(s)	68, 189, 696
MslI	CAYNNNNRTG	1 cut(s)	678
Msp20I	TGGCCA	1 cut(s)	141
MspA1I	CMGCKG	2 cut(s)	407, 885
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
Mva1269I	GAATGC	2 cut(s)	686, 833
MvaI	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	910
NdeII	GATC	2 cut(s)	151, 533
NlaIII	CATG	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	586
PauI	GCGCGC	1 cut(s)	203
PctI	GAATGC	2 cut(s)	686, 833
PfeI	GAWTC	5 cut(s)	112, 275, 331, 380, 851
PfoI	TCCNGGA	1 cut(s)	362
PkrI	GCNGC	3 cut(s)	21, 861, 884
PleI	GAGTC	1 cut(s)	809
PpsI	GAGTC	1 cut(s)	809
Psp6I	CCWGG	7 cut(s)	362, 435, 447, 520, 594, 613, 831
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	7 cut(s)	362, 435, 447, 520, 594, 613, 831
PspPI	GGNCC	2 cut(s)	46, 299
PteI	GCGCGC	1 cut(s)	203
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
RseI	CAYNNNNRTG	1 cut(s)	678
Rsr2I	CGGWCCG	1 cut(s)	46
RsrII	CGGWCCG	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	68, 189, 696
SatI	GCNGC	3 cut(s)	20, 860, 883
Sau3AI	GATC	2 cut(s)	151, 533
Sau96I	GGNCC	2 cut(s)	46, 299
ScaI	AGTACT	1 cut(s)	552
SchI	GAGTC	1 cut(s)	809
ScrFI	CCNGG	7 cut(s)	364, 437, 449, 522, 596, 615, 833
SduI	GDGCHC	1 cut(s)	753
SfaNI	GCATC	1 cut(s)	608
SfcI	CTRYAG	1 cut(s)	388
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	678
Sse9I	AATT	2 cut(s)	197, 727
SsiI	CCGC	7 cut(s)	49, 60, 405, 860, 880, 885, 904
StyD4I	CCNGG	7 cut(s)	362, 435, 447, 520, 594, 613, 831
TaaI	ACNGT	2 cut(s)	586, 748
TaiI	ACGT	1 cut(s)	315
TasI	AATT	2 cut(s)	197, 727
TatI	WGTACW	1 cut(s)	550
TauI	GCSGC	1 cut(s)	862
TfiI	GAWTC	5 cut(s)	112, 275, 331, 380, 851
Tru1I	TTAA	3 cut(s)	68, 189, 696
Tru9I	TTAA	3 cut(s)	68, 189, 696
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	2 cut(s)	19, 882
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	4 cut(s)	558, 679, 825, 864
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	262
VneI	GTGCAC	1 cut(s)	749
VpaK11BI	GGWCC	1 cut(s)	46
XagI	CCTNNNNNAGG	1 cut(s)	452
ZrmI	AGTACT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.