Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001740

Physical Location & Seq

Genomic Coordinates Forward (+)

49089279 .. 49092249

Gene Structure 2971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003488

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCAGAGGGTCTGAAGATGCCCATCATAGACTTATCCTCACCGGACCGCACCTCCTCCGCCAGTTTAATCCGTCAGGCTTGCATAGAGTGTGGTTTCTTTTACTTGGTGAATCATGGTGTCGAGGAAGAGTTACTTGGCCAAGTTTTTGATCAGAGCAGTAAGTTTTTTTCACTTCCTTTGGAAGTTAAGTCCAAATTGGTGCGCAAACAAAACAGAGGCTATACACCACTATTTGCTGAGAACCTTGACCCCACTGCCAGCTCCAAAGGTGATTCAAAAGAGAGTTTTTACATTGGCCCTTTAGAAGACATAACTCAAAATAAGTTGAATCAATGGCCTTCAGAAGATATGCTTCCATCCTGGAGACCTACAATGGAATCCTACTATAAAAAAGTTCTTTCTGCTGGGAAAAGAGTACTATCCCTGATTGCCCTGGCTTTGAACCTGGATGAGGATTTTTTTGAGAAAGCGGGGGGTCTGAATAAACACACAGCACTTCTTCGCCTTTTGCACTACCCAGGTCAACTGGGATCATCTGATGAAGAAGTACTTGGTGCTTCTGCTCATTCAGACTATGGAACAGTCACACTCCTGGCATCCAATGGTGTCCCAGGACTTCAGGTTTGTAGGGAAAAATCTAGGCAACCACGGGTTTGGGAAGATGTTATTCACATAGATGCATTCATTGTTAACATTGGGGATTTGATGGAGAGGTGGACTAATTGTTTGTTCCAGTCAACGGCGCACAGAGTTATACCAACAGGACAGGAACGCTACTCTGTGGCTTTCTTCTTAGACCCCAATGAAGACGCTCTGGTAGAATGCCTGGCAAGTTGTTGCAATGAATCATTGCCGCCAAGAACTTCTCCTTGCAAAACTGGTTCACTGGGGATGGATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

302

Amino Acids

33.43

Weight (kDa)

5.16

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	8 - 116	2.2e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	167 - 268	2.7e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16770
fragaria_vesca	FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520
malus_domestica	MD00G1169400.v1.1 MD00G1169500.v1.1 MD04G1060700.v1.1 MD04G1060800.v1.1 MD11G1277300.v1.1
prunus_persica	Prupe.5G064700_v2.0.a1
pyrus_communis	pycom04g05460 pycom04g05470
rosa_chinensis	RchiOBHm_Chr7g0204121 RchiOBHm_Chr7g0204131
rosa_laevigata	RLG00000003486 RLG00000003488
rosa_multiflora	Rmu_sc0001311.1_g000016 Rmu_sc0001311.1_g000018
rosa_roxburghii	Rroxscaffold_3G00253320 Rroxscaffold_3G00253340
rosa_rugosa	Rorug07G0080800 Rorug07G0080900 Rorug07G0081000
rosa_samantha	Rh7AG210800 Rh7BG209300 Rh7BG209500 Rh7CG223200 Rh7CG223400 Rh7DG217500 Rh7DG217700
rosa_wichuraiana	Rw7G018340 Rw7G018350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	206
AciI	CCGC	4 cut(s)	49, 60, 473, 857
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	1 cut(s)	139
AcuI	CTGAAG	3 cut(s)	35, 327, 605
AfaI	GTAC	2 cut(s)	420, 552
AfiI	CCNNNNNNNGG	2 cut(s)	454, 742
AgsI	TTSAA	3 cut(s)	279, 331, 445
AjnI	CCWGG	7 cut(s)	362, 435, 447, 520, 594, 613, 828
AjuI	GAANNNNNNNTTGG	4 cut(s)	120, 152, 537, 569
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	541
AoxI	GGCC	3 cut(s)	139, 298, 338
ArsI	GACNNNNNNTTYG	4 cut(s)	609, 641, 712, 744
AspLEI	GCGC	2 cut(s)	207, 748
AspS9I	GGNCC	2 cut(s)	46, 299
AsuHPI	GGTGA	3 cut(s)	33, 121, 284
AvaII	GGWCC	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	141
BbsI	GAAGAC	2 cut(s)	315, 816
BccI	CCATC	4 cut(s)	32, 367, 703, 889
BceAI	ACGGC	1 cut(s)	759
BciT130I	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 830
BciVI	GTATCC	1 cut(s)	892
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	642
BfuI	GTATCC	1 cut(s)	892
BisI	GCNGC	1 cut(s)	857
BlsI	GCNGC	1 cut(s)	858
BmcAI	AGTACT	2 cut(s)	420, 552
Bme1390I	CCNGG	7 cut(s)	364, 437, 449, 522, 596, 615, 830
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	46, 299
BmrFI	CCNGG	7 cut(s)	364, 437, 449, 522, 596, 615, 830
BmrI	ACTGGG	2 cut(s)	539, 899
BmsI	GCATC	3 cut(s)	9, 608, 670
BmuI	ACTGGG	2 cut(s)	539, 899
BpiI	GAAGAC	2 cut(s)	315, 816
BpmI	CTGGAG	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	4 cut(s)	435, 520, 613, 650
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 742
Bse1I	ACTGG	5 cut(s)	63, 534, 736, 886, 894
Bse3DI	GCAATG	2 cut(s)	850, 851
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 830
BseDI	CCNNGG	4 cut(s)	435, 520, 613, 650
BseGI	GGATG	4 cut(s)	359, 457, 599, 900
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	2 cut(s)	454, 742
BseMI	GCAATG	2 cut(s)	850, 851
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	5 cut(s)	63, 534, 736, 886, 894
BseRI	GAGGAG	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	3 cut(s)	141, 300, 340
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	2 cut(s)	454, 742
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	596
BsmI	GAATGC	2 cut(s)	683, 830
BsnI	GGCC	3 cut(s)	141, 300, 340
Bso31I	GGTCTC	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	151, 533
BspACI	CCGC	4 cut(s)	49, 60, 473, 857
BspANI	GGCC	3 cut(s)	141, 300, 340
BspCNI	CTCAG	1 cut(s)	232
BspPI	GGATC	1 cut(s)	541
BspTNI	GGTCTC	1 cut(s)	361
BsrDI	GCAATG	2 cut(s)	850, 851
BsrI	ACTGG	5 cut(s)	63, 534, 736, 886, 894
BssECI	CCNNGG	4 cut(s)	435, 520, 613, 650
BssMI	GATC	2 cut(s)	151, 533
Bst2UI	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 830
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	82, 262
BstDEI	CTNAG	2 cut(s)	240, 796
BstDSI	CCRYGG	1 cut(s)	650
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	4 cut(s)	359, 457, 599, 900
BstHHI	GCGC	2 cut(s)	207, 748
BstKTI	GATC	2 cut(s)	154, 536
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	2 cut(s)	151, 533
BstNI	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 830
BstSCI	CCNGG	7 cut(s)	362, 435, 447, 520, 594, 613, 828
BstV2I	GAAGAC	2 cut(s)	315, 816
BstXI	CCANNNNNNTGG	1 cut(s)	657
BsuI	GTATCC	1 cut(s)	892
BsuRI	GGCC	3 cut(s)	141, 300, 340
BtgI	CCRYGG	1 cut(s)	650
BtsCI	GGATG	4 cut(s)	359, 457, 599, 900
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 887
Cac8I	GCNNGC	2 cut(s)	82, 262
CfoI	GCGC	2 cut(s)	207, 748
Cfr13I	GGNCC	2 cut(s)	46, 299
CpoI	CGGWCCG	1 cut(s)	46
CseI	GACGC	1 cut(s)	821
Csp6I	GTAC	2 cut(s)	419, 551
CspI	CGGWCCG	1 cut(s)	46
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	8 cut(s)	80, 141, 222, 264, 300, 340, 440, 788
CviKI_1	RGCY	8 cut(s)	80, 141, 222, 264, 300, 340, 440, 788
CviQI	GTAC	2 cut(s)	419, 551
DdeI	CTNAG	2 cut(s)	240, 796
DpnI	GATC	2 cut(s)	153, 535
DpnII	GATC	2 cut(s)	151, 533
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	3 cut(s)	35, 327, 605
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRII	CCWGG	7 cut(s)	362, 435, 447, 520, 594, 613, 828
EcoT22I	ATGCAT	1 cut(s)	685
FaeI	CATG	1 cut(s)	119
FalI	AAGNNNNNCTT	6 cut(s)	120, 152, 339, 371, 537, 569
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	1 cut(s)	115
FauI	CCCGC	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	857
FokI	GGATG	3 cut(s)	346, 464, 586
Fsp4HI	GCNGC	1 cut(s)	857
FspBI	CTAG	1 cut(s)	642
FspI	TGCGCA	1 cut(s)	206
GlaI	GCGC	2 cut(s)	206, 747
GluI	GCNGC	1 cut(s)	857
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	385
HaeIII	GGCC	3 cut(s)	141, 300, 340
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	821
HhaI	GCGC	2 cut(s)	207, 748
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	2 cut(s)	205, 746
HinP1I	GCGC	2 cut(s)	205, 746
HincII	GTYRAC	3 cut(s)	527, 694, 741
HindII	GTYRAC	3 cut(s)	527, 694, 741
HinfI	GANTC	5 cut(s)	112, 275, 331, 380, 848
HpaI	GTTAAC	1 cut(s)	694
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	3 cut(s)	33, 121, 284
Hpy166II	GTNNAC	5 cut(s)	527, 694, 720, 741, 887
Hpy188I	TCNGA	6 cut(s)	15, 156, 346, 483, 541, 574
Hpy8I	GTNNAC	5 cut(s)	527, 694, 720, 741, 887
HpyAV	CCTTC	1 cut(s)	351
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4V	TGCA	5 cut(s)	84, 514, 683, 843, 876
HpyF3I	CTNAG	2 cut(s)	240, 796
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	2 cut(s)	205, 746
Ksp22I	TGATCA	1 cut(s)	151
KspAI	GTTAAC	1 cut(s)	694
Kzo9I	GATC	2 cut(s)	151, 533
LmnI	GCTCC	1 cut(s)	269
LweI	GCATC	3 cut(s)	9, 608, 670
MaeI	CTAG	1 cut(s)	642
MaeIII	GTNAC	2 cut(s)	132, 586
MalI	GATC	2 cut(s)	153, 535
MboI	GATC	2 cut(s)	151, 533
MboII	GAAGA	9 cut(s)	28, 140, 320, 359, 494, 557, 674, 784, 821
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	2 cut(s)	197, 724
MluNI	TGGCCA	1 cut(s)	141
MnlI	CCTC	7 cut(s)	49, 64, 67, 118, 212, 448, 708
Mox20I	TGGCCA	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	685
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	3 cut(s)	68, 189, 693
MslI	CAYNNNNRTG	1 cut(s)	678
Msp20I	TGGCCA	1 cut(s)	141
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	7 cut(s)	364, 437, 449, 522, 596, 615, 830
Mva1269I	GAATGC	2 cut(s)	683, 830
MvaI	CCWGG	7 cut(s)	364, 437, 449, 522, 596, 615, 830
NdeII	GATC	2 cut(s)	151, 533
NlaIII	CATG	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	586
NsbI	TGCGCA	1 cut(s)	206
NsiI	ATGCAT	1 cut(s)	685
PctI	GAATGC	2 cut(s)	683, 830
PfeI	GAWTC	5 cut(s)	112, 275, 331, 380, 848
PfoI	TCCNGGA	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	858
Psp6I	CCWGG	7 cut(s)	362, 435, 447, 520, 594, 613, 828
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	7 cut(s)	362, 435, 447, 520, 594, 613, 828
PspPI	GGNCC	2 cut(s)	46, 299
RsaI	GTAC	2 cut(s)	420, 552
RsaNI	GTAC	2 cut(s)	419, 551
RseI	CAYNNNNRTG	1 cut(s)	678
Rsr2I	CGGWCCG	1 cut(s)	46
RsrII	CGGWCCG	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	68, 189, 693
SatI	GCNGC	1 cut(s)	857
Sau3AI	GATC	2 cut(s)	151, 533
Sau96I	GGNCC	2 cut(s)	46, 299
ScaI	AGTACT	2 cut(s)	420, 552
ScrFI	CCNGG	7 cut(s)	364, 437, 449, 522, 596, 615, 830
SfaNI	GCATC	3 cut(s)	9, 608, 670
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	678
Sse9I	AATT	2 cut(s)	197, 724
SsiI	CCGC	4 cut(s)	49, 60, 473, 857
SspMI	CTAG	1 cut(s)	642
StyD4I	CCNGG	7 cut(s)	362, 435, 447, 520, 594, 613, 828
TaaI	ACNGT	1 cut(s)	586
TaqI	TCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	197, 724
TatI	WGTACW	2 cut(s)	418, 550
TauI	GCSGC	1 cut(s)	859
TfiI	GAWTC	5 cut(s)	112, 275, 331, 380, 848
Tru1I	TTAA	3 cut(s)	68, 189, 693
Tru9I	TTAA	3 cut(s)	68, 189, 693
TscAI	CASTG	2 cut(s)	262, 894
TseFI	GTSAC	1 cut(s)	586
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	4 cut(s)	558, 676, 822, 861
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	2 cut(s)	262, 894
VpaK11BI	GGWCC	1 cut(s)	46
XagI	CCTNNNNNAGG	1 cut(s)	452
XspI	CTAG	1 cut(s)	642
ZrmI	AGTACT	2 cut(s)	420, 552
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.