Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001740

Physical Location & Seq

Genomic Coordinates Reverse (-)

39453997 .. 39454938

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1277300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGACGACGGAGGCAGTGAACCTGCCGATCATTGACTTGTCCTCATCAGATTCTATCTCCTCCGCCGCTTCAATCCGTCAGGCATGCATAGAGTGTGGTTTCTTCTACCTGGTGAATCATGGCGTCGAGGAAGAGCTGTTTGCAGAGGTGTTCGATCAGAGCAGCAACTTCTTTTCGCTTCCTTTGGAAGATAAGTTGAAACTGGATCGCAAGCATCACAGTGGTCACAGTGGATACACCCCACTCTTTTCCGAAAACCTCGACTTCGCTTCCAGCTCCAAAGGTGACTCGAAAGAGAGTTATTACGTCGGCAATTTATATGACCCAACTCAGAGTCATTTGAATAAATGGCCTTCAGAAGACATCCTTCCATCTTTGAGACCTACAATGGAATCGTACTATAGAAAAGTCCTGTCTGCTGGAAAAAGGTTAAGCTCTCTGATTGCCCTGGCTTTAAACCTAGATGAGGACTTTTTCGACAAAGTGGGGGCACTGAATAAACCAAGGGGTTTTCTTCGACTTTTACACTATCCAGGTGAGCTGGGATCAACCGATGAAGAAATATATGGTGCTTCTGCTCATTCAGACTATGGCATGGTCACACTCCTTGCATCCAATGGAGTTCCTGGACTTCAGGTTTGTAGGGACAAATCTAAGCAACCTCGAGTCTGGGAAGATGTTCTTCACATAGATGGGGCATTCATTGTCAACATTGGGGACATGCTGGAGAGGTGGACTAATTGTTTGTTCAGGTCAACACTGCATAGAGTGATGCCAGCAGGACGAGAACGCTACTCCGTCGCATTCTTCATGGATCCCAATGAAGATTGTGTCGTGGAATGTCTGGCAAGTTGTTGCAGTGAAGAATCACCGCCAAGATTTCCTCCCGTCCGCAGTGGGGACTACCTGGAAGAGCGTTTTCGGCTTACAAATGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

314

Amino Acids

35.14

Weight (kDa)

5.04

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	8 - 120	4e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	172 - 273	8.3e-21	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16770
fragaria_vesca	FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520
malus_domestica	MD00G1169400.v1.1 MD00G1169500.v1.1 MD04G1060700.v1.1 MD04G1060800.v1.1 MD11G1277300.v1.1
prunus_persica	Prupe.5G064700_v2.0.a1
pyrus_communis	pycom04g05460 pycom04g05470
rosa_chinensis	RchiOBHm_Chr7g0204121 RchiOBHm_Chr7g0204131
rosa_laevigata	RLG00000003486 RLG00000003488
rosa_multiflora	Rmu_sc0001311.1_g000016 Rmu_sc0001311.1_g000018
rosa_roxburghii	Rroxscaffold_3G00253320 Rroxscaffold_3G00253340
rosa_rugosa	Rorug07G0080800 Rorug07G0080900 Rorug07G0081000
rosa_samantha	Rh7AG210800 Rh7BG209300 Rh7BG209500 Rh7CG223200 Rh7CG223400 Rh7DG217500 Rh7DG217700
rosa_wichuraiana	Rw7G018340 Rw7G018350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AciI	CCGC	4 cut(s)	63, 66, 872, 892
AclWI	GGATC	4 cut(s)	213, 553, 809, 822
AcuI	CTGAAG	2 cut(s)	339, 617
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	466, 898
AgsI	TTSAA	3 cut(s)	72, 199, 343
AjnI	CCWGG	5 cut(s)	108, 447, 532, 625, 906
AluBI	AGCT	4 cut(s)	136, 276, 435, 541
AluI	AGCT	4 cut(s)	136, 276, 435, 541
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	4 cut(s)	213, 553, 809, 822
Ama87I	CYCGRG	1 cut(s)	663
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	162
ArsI	GACNNNNNNTTYG	4 cut(s)	621, 653, 727, 759
Asp700I	GAANNNNTTC	1 cut(s)	678
AsuHPI	GGTGA	4 cut(s)	124, 296, 548, 861
AvaI	CYCGRG	1 cut(s)	663
BaeGI	GKGCMC	1 cut(s)	493
BamHI	GGATCC	1 cut(s)	814
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	2 cut(s)	379, 686
BciT130I	CCWGG	5 cut(s)	110, 449, 534, 627, 908
BciVI	GTATCC	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	400
BfuAI	ACCTGC	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	66, 163
BlsI	GCNGC	2 cut(s)	67, 164
Bme1390I	CCNGG	5 cut(s)	110, 449, 534, 627, 908
BmeT110I	CYCGRG	1 cut(s)	663
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	5 cut(s)	110, 449, 534, 627, 908
BmsI	GCATC	3 cut(s)	223, 620, 762
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	746
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	447, 503
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 898
Bse1I	ACTGG	1 cut(s)	207
BseBI	CCWGG	5 cut(s)	110, 449, 534, 627, 908
BseDI	CCNNGG	2 cut(s)	447, 503
BseGI	GGATG	2 cut(s)	363, 611
BseLI	CCNNNNNNNGG	2 cut(s)	466, 898
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	49
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	1 cut(s)	174
BseYI	CCCAGC	1 cut(s)	541
BshFI	GGCC	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	663
BslFI	GGGAC	3 cut(s)	659, 731, 914
BslI	CCNNNNNNNGG	2 cut(s)	466, 898
BsmAI	GTCTC	1 cut(s)	373
BsmFI	GGGAC	3 cut(s)	659, 731, 914
BsmI	GAATGC	2 cut(s)	698, 803
BsnI	GGCC	1 cut(s)	352
Bso31I	GGTCTC	1 cut(s)	373
BsoBI	CYCGRG	1 cut(s)	663
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	5 cut(s)	27, 154, 205, 545, 814
BspACI	CCGC	4 cut(s)	63, 66, 872, 892
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	816
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	4 cut(s)	213, 553, 809, 822
BspQI	GCTCTTC	2 cut(s)	126, 906
BspTNI	GGTCTC	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	447, 503
BssMI	GATC	5 cut(s)	27, 154, 205, 545, 814
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	503
Bst2UI	CCWGG	5 cut(s)	110, 449, 534, 627, 908
Bst4CI	ACNGT	2 cut(s)	221, 230
Bst6I	CTCTTC	2 cut(s)	126, 906
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	85, 212, 777
BstDEI	CTNAG	2 cut(s)	330, 654
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstF5I	GGATG	2 cut(s)	363, 611
BstKTI	GATC	5 cut(s)	30, 157, 208, 548, 817
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	5 cut(s)	27, 154, 205, 545, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	922
BstNI	CCWGG	5 cut(s)	110, 449, 534, 627, 908
BstNSI	RCATGY	2 cut(s)	87, 724
BstSCI	CCNGG	5 cut(s)	108, 447, 532, 625, 906
BstSFI	CTRYAG	1 cut(s)	400
BstSLI	GKGCMC	1 cut(s)	493
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
BsuI	GTATCC	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	363, 611
BtsI	GCAGTG	4 cut(s)	21, 758, 865, 901
BtsIMutI	CAGTG	7 cut(s)	21, 226, 235, 491, 758, 865, 901
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	3 cut(s)	85, 212, 777
CseI	GACGC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	5 cut(s)	84, 119, 595, 721, 811
CviJI	RGCY	7 cut(s)	136, 276, 352, 435, 452, 541, 925
CviKI_1	RGCY	7 cut(s)	136, 276, 352, 435, 452, 541, 925
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	2 cut(s)	330, 654
DpnI	GATC	5 cut(s)	29, 156, 207, 547, 816
DpnII	GATC	5 cut(s)	27, 154, 205, 545, 814
DraI	TTTAAA	1 cut(s)	456
Eam1104I	CTCTTC	2 cut(s)	126, 906
EarI	CTCTTC	2 cut(s)	126, 906
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	503
Eco31I	GGTCTC	1 cut(s)	373
Eco57I	CTGAAG	2 cut(s)	339, 617
Eco88I	CYCGRG	1 cut(s)	663
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoRII	CCWGG	5 cut(s)	108, 447, 532, 625, 906
EcoT14I	CCWWGG	1 cut(s)	503
EcoT22I	ATGCAT	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	503
FaeI	CATG	5 cut(s)	87, 122, 598, 724, 814
FalI	AAGNNNNNCTT	4 cut(s)	351, 383, 666, 698
FaqI	GGGAC	3 cut(s)	659, 731, 914
FatI	CATG	5 cut(s)	83, 118, 594, 720, 810
Fnu4HI	GCNGC	2 cut(s)	66, 163
FokI	GGATG	2 cut(s)	350, 598
Fsp4HI	GCNGC	2 cut(s)	66, 163
FspBI	CTAG	1 cut(s)	461
GluI	GCNGC	2 cut(s)	66, 163
GsaI	CCCAGC	1 cut(s)	545
GsuI	CTGGAG	1 cut(s)	746
HaeIII	GGCC	1 cut(s)	352
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	5 cut(s)	87, 122, 598, 724, 814
HincII	GTYRAC	2 cut(s)	709, 756
HindII	GTYRAC	2 cut(s)	709, 756
HinfI	GANTC	7 cut(s)	50, 115, 287, 334, 392, 666, 866
HphI	GGTGA	4 cut(s)	124, 296, 548, 861
Hpy166II	GTNNAC	4 cut(s)	19, 709, 735, 756
Hpy188I	TCNGA	7 cut(s)	49, 159, 253, 333, 358, 441, 586
Hpy8I	GTNNAC	4 cut(s)	19, 709, 735, 756
Hpy99I	CGWCG	4 cut(s)	10, 128, 311, 803
HpyAV	CCTTC	2 cut(s)	363, 377
HpyCH4III	ACNGT	2 cut(s)	221, 230
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	6 cut(s)	87, 143, 611, 763, 858, 935
HpyF10VI	GCNNNNNNNGC	1 cut(s)	922
HpyF3I	CTNAG	2 cut(s)	330, 654
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	5 cut(s)	87, 122, 598, 724, 814
Kzo9I	GATC	5 cut(s)	27, 154, 205, 545, 814
LguI	GCTCTTC	2 cut(s)	126, 906
LmnI	GCTCC	1 cut(s)	281
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	3 cut(s)	223, 620, 762
MabI	ACCWGGT	1 cut(s)	108
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	3 cut(s)	224, 284, 598
MalI	GATC	5 cut(s)	29, 156, 207, 547, 816
MboI	GATC	5 cut(s)	27, 154, 205, 545, 814
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	3 cut(s)	313, 739, 936
MlyI	GAGTC	3 cut(s)	281, 343, 675
Mph1103I	ATGCAT	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	678
MseI	TTAA	3 cut(s)	431, 455, 940
MslI	CAYNNNNRTG	2 cut(s)	219, 690
MspR9I	CCNGG	5 cut(s)	110, 449, 534, 627, 908
Mva1269I	GAATGC	2 cut(s)	698, 803
MvaI	CCWGG	5 cut(s)	110, 449, 534, 627, 908
MwoI	GCNNNNNNNGC	1 cut(s)	922
NdeII	GATC	5 cut(s)	27, 154, 205, 545, 814
NlaIII	CATG	5 cut(s)	87, 122, 598, 724, 814
NlaIV	GGNNCC	1 cut(s)	816
NmuCI	GTSAC	3 cut(s)	224, 284, 598
NsiI	ATGCAT	1 cut(s)	89
NspI	RCATGY	2 cut(s)	87, 724
PaeI	GCATGC	1 cut(s)	87
PaeR7I	CTCGAG	1 cut(s)	663
PciSI	GCTCTTC	2 cut(s)	126, 906
PctI	GAATGC	2 cut(s)	698, 803
PdmI	GAANNNNTTC	1 cut(s)	678
PfeI	GAWTC	4 cut(s)	50, 115, 392, 866
PfoI	TCCNGGA	1 cut(s)	625
PkrI	GCNGC	2 cut(s)	67, 164
PleI	GAGTC	3 cut(s)	281, 342, 674
PpsI	GAGTC	3 cut(s)	281, 342, 674
Psp6I	CCWGG	5 cut(s)	108, 447, 532, 625, 906
PspFI	CCCAGC	1 cut(s)	541
PspGI	CCWGG	5 cut(s)	108, 447, 532, 625, 906
PspN4I	GGNNCC	1 cut(s)	816
PspXI	VCTCGAGB	1 cut(s)	663
PsuI	RGATCY	1 cut(s)	814
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	2 cut(s)	219, 690
SapI	GCTCTTC	2 cut(s)	126, 906
SaqAI	TTAA	3 cut(s)	431, 455, 940
SatI	GCNGC	2 cut(s)	66, 163
Sau3AI	GATC	5 cut(s)	27, 154, 205, 545, 814
SchI	GAGTC	3 cut(s)	281, 343, 675
ScrFI	CCNGG	5 cut(s)	110, 449, 534, 627, 908
SduI	GDGCHC	1 cut(s)	493
SexAI	ACCWGGT	1 cut(s)	108
SfaNI	GCATC	3 cut(s)	223, 620, 762
SfcI	CTRYAG	1 cut(s)	400
Sfr274I	CTCGAG	1 cut(s)	663
SlaI	CTCGAG	1 cut(s)	663
SmiMI	CAYNNNNRTG	2 cut(s)	219, 690
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
SphI	GCATGC	1 cut(s)	87
Sse9I	AATT	3 cut(s)	313, 739, 936
SsiI	CCGC	4 cut(s)	63, 66, 872, 892
SspMI	CTAG	1 cut(s)	461
StyD4I	CCNGG	5 cut(s)	108, 447, 532, 625, 906
StyI	CCWWGG	1 cut(s)	503
TaaI	ACNGT	2 cut(s)	221, 230
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	7 cut(s)	126, 153, 261, 290, 477, 517, 664
TasI	AATT	3 cut(s)	313, 739, 936
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	4 cut(s)	50, 115, 392, 866
Tru1I	TTAA	3 cut(s)	431, 455, 940
Tru9I	TTAA	3 cut(s)	431, 455, 940
TscAI	CASTG	7 cut(s)	21, 226, 235, 498, 765, 865, 901
TseFI	GTSAC	3 cut(s)	224, 284, 598
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	3 cut(s)	224, 284, 598
TspDTI	ATGAA	4 cut(s)	570, 691, 799, 837
TspGWI	ACGGA	3 cut(s)	23, 65, 787
TspRI	CASTG	7 cut(s)	21, 226, 235, 498, 765, 865, 901
XagI	CCTNNNNNAGG	1 cut(s)	464
XceI	RCATGY	2 cut(s)	87, 724
XhoI	CTCGAG	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	678
XspI	CTAG	1 cut(s)	461
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.