Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001740

Physical Location & Seq

Genomic Coordinates Forward (+)

7894497 .. 7898973

Gene Structure 4477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G064700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACAGCGGCTCTAAACCTGCCTATCATAGACTTGTCCTCACCAGATTCCCTCTCCTCCGCCACTTCCATCCGTCAGGCGTGCATAGAGTGTGGTTTCTTCTACTTAGTGAATCATGGTGTTGAGGAAGAGTTGCTCGGGCATGTGTTCGAGGAGAGCAGCAAGCTGTTTTCGCTGCCATTGGAGGACAAGTTGAAATTGGCTCGCAAGCAACACAGAGGTTACACCCCACTCTTTTCCGAGAACCTCGATCCCACTTCCACCTCCAAAGGTGACTCGAAAGAGAGTTTTTATATCGGACCGTTAGATACTCGCAGTAATTTGAATCAATGGCCTTCAGAAGATATCCTACCATCTTGGAGACCGACAATGGAATCCTACTATAGAAAAGTCCTCTCTGCTGGAAAAAGATTAATCTCACTGATTGCCCTGGCTTTGAACCTGGATGAGGAATTTTTTGAGAAAGTGGGGGCGCTGAATAAGCCAACAGCAGTTCTTCGCCTTTTGCACTATCCAGGTCAACTGGGATCAACTGATGAAGAAATATACGGTGCTTCTGCTCATTCAGATTATGGGATGGTCACTCTCCTTGCATCAAATGGAGTTCCTGGACTTCAGGTTTGTAGGGAAAAATCTAAACAACCACGGATCTGGGAAGATGTTCTTCACATAGATGGGGCATTCATTGTTAACATTGGGGACATGTTGGAGAGGTGGACTAATTGTTTGTTCAGGTCAACACTGCATAGAGTGATGCCAGCAGGACAAGAGCGCTACTCTGTGGCATTCTTCTTAGACCCCAATGAAGACTTTGTAGTGGAATGTCTGAAAAGTTGTTGCAGTGAAGCATCACCCCCAAGATTTCCTCCCATCCGTAGCGGGGACTACCTGAAAGAGCGATTCAGGCTTACATATGGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

308

Amino Acids

34.52

Weight (kDa)

5.47

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16765 AT4G16770
fragaria_vesca	FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520 FvH4_5g19520
malus_domestica	MD00G1169400.v1.1 MD00G1169500.v1.1 MD04G1060700.v1.1 MD04G1060800.v1.1 MD11G1277300.v1.1
prunus_persica	Prupe.5G064700_v2.0.a1
pyrus_communis	pycom04g05460 pycom04g05470
rosa_chinensis	RchiOBHm_Chr7g0204121 RchiOBHm_Chr7g0204131
rosa_laevigata	RLG00000003486 RLG00000003488
rosa_multiflora	Rmu_sc0001311.1_g000016 Rmu_sc0001311.1_g000018
rosa_roxburghii	Rroxscaffold_3G00253320 Rroxscaffold_3G00253340
rosa_rugosa	Rorug07G0080800 Rorug07G0080900 Rorug07G0081000
rosa_samantha	Rh7AG210800 Rh7BG209300 Rh7BG209500 Rh7CG223200 Rh7CG223400 Rh7DG217500 Rh7DG217700
rosa_wichuraiana	Rw7G018340 Rw7G018350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	27
AciI	CCGC	3 cut(s)	8, 60, 879
AclWI	GGATC	3 cut(s)	245, 535, 656
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	2 cut(s)	321, 599
AfeI	AGCGCT	1 cut(s)	773
AfiI	CCNNNNNNNGG	2 cut(s)	448, 880
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	3 cut(s)	196, 325, 439
AjnI	CCWGG	4 cut(s)	429, 441, 514, 607
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	3 cut(s)	245, 535, 656
Ama87I	CYCGRG	1 cut(s)	137
Aor51HI	AGCGCT	1 cut(s)	773
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	2 cut(s)	159, 175
ApoI	RAATTY	1 cut(s)	452
ArsI	GACNNNNNNTTYG	4 cut(s)	603, 635, 709, 741
AseI	ATTAAT	1 cut(s)	413
Asp700I	GAANNNNTTC	1 cut(s)	660
AspLEI	GCGC	2 cut(s)	475, 774
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	3 cut(s)	33, 284, 843
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	299
BarI	GAAGNNNNNNTAC	2 cut(s)	333, 365
BbsI	GAAGAC	1 cut(s)	813
BbvI	GCAGC	2 cut(s)	162, 171
BccI	CCATC	5 cut(s)	77, 361, 571, 668, 878
BciT130I	CCWGG	4 cut(s)	431, 443, 516, 609
BcoDI	GTCTC	1 cut(s)	355
BfmI	CTRYAG	1 cut(s)	382
BfoI	RGCGCY	2 cut(s)	476, 775
BfuAI	ACCTGC	1 cut(s)	27
BisI	GCNGC	3 cut(s)	9, 160, 176
BlsI	GCNGC	3 cut(s)	10, 161, 177
Bme1390I	CCNGG	4 cut(s)	431, 443, 516, 609
Bme18I	GGWCC	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	299
BmrFI	CCNGG	4 cut(s)	431, 443, 516, 609
BmrI	ACTGGG	1 cut(s)	533
BmsI	GCATC	3 cut(s)	602, 744, 857
BmuI	ACTGGG	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	813
BplI	GAGNNNNNCTC	2 cut(s)	761, 793
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	429, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 880
Bse1I	ACTGG	1 cut(s)	528
BseBI	CCWGG	4 cut(s)	431, 443, 516, 609
BseDI	CCNNGG	2 cut(s)	429, 644
BseGI	GGATG	4 cut(s)	69, 451, 582, 870
BseLI	CCNNNNNNNGG	2 cut(s)	448, 880
BseNI	ACTGG	1 cut(s)	528
BseRI	GAGGAG	2 cut(s)	46, 167
BseXI	GCAGC	2 cut(s)	162, 171
BshFI	GGCC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	137
BslFI	GGGAC	2 cut(s)	713, 896
BslI	CCNNNNNNNGG	2 cut(s)	448, 880
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	2 cut(s)	713, 896
BsmI	GAATGC	2 cut(s)	680, 785
BsnI	GGCC	1 cut(s)	334
Bso31I	GGTCTC	1 cut(s)	355
BsoBI	CYCGRG	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	250, 527, 648
BspACI	CCGC	3 cut(s)	8, 60, 879
BspANI	GGCC	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	27
BspPI	GGATC	3 cut(s)	245, 535, 656
BspTNI	GGTCTC	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	528
BssECI	CCNNGG	2 cut(s)	429, 644
BssMI	GATC	3 cut(s)	250, 527, 648
Bst2UI	CCWGG	4 cut(s)	431, 443, 516, 609
Bst4CI	ACNGT	2 cut(s)	303, 551
Bst6I	CTCTTC	1 cut(s)	123
BstC8I	GCNNGC	5 cut(s)	82, 164, 205, 209, 759
BstDEI	CTNAG	2 cut(s)	106, 793
BstDSI	CCRYGG	1 cut(s)	644
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	4 cut(s)	69, 451, 582, 870
BstH2I	RGCGCY	2 cut(s)	476, 775
BstHHI	GCGC	2 cut(s)	475, 774
BstKTI	GATC	3 cut(s)	253, 530, 651
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	3 cut(s)	250, 527, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 481, 904
BstNI	CCWGG	4 cut(s)	431, 443, 516, 609
BstNSI	RCATGY	2 cut(s)	146, 706
BstSCI	CCNGG	4 cut(s)	429, 441, 514, 607
BstSFI	CTRYAG	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	162, 171
BstV2I	GAAGAC	1 cut(s)	813
BstX2I	RGATCY	1 cut(s)	648
BstXI	CCANNNNNNTGG	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	644
BtsCI	GGATG	4 cut(s)	69, 451, 582, 870
BtsI	GCAGTG	2 cut(s)	740, 847
BtsIMutI	CAGTG	3 cut(s)	419, 740, 847
BveI	ACCTGC	1 cut(s)	27
Cac8I	GCNNGC	5 cut(s)	82, 164, 205, 209, 759
CfoI	GCGC	2 cut(s)	475, 774
Cfr13I	GGNCC	1 cut(s)	299
CpoI	CGGWCCG	1 cut(s)	299
CspI	CGGWCCG	1 cut(s)	299
CviAII	CATG	3 cut(s)	116, 143, 703
CviJI	RGCY	8 cut(s)	11, 166, 203, 334, 434, 484, 907, 918
CviKI_1	RGCY	8 cut(s)	11, 166, 203, 334, 434, 484, 907, 918
DdeI	CTNAG	2 cut(s)	106, 793
DpnI	GATC	3 cut(s)	252, 529, 650
DpnII	GATC	3 cut(s)	250, 527, 648
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	355
Eco32I	GATATC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	299
Eco47III	AGCGCT	1 cut(s)	773
Eco57I	CTGAAG	2 cut(s)	321, 599
Eco88I	CYCGRG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoRII	CCWGG	4 cut(s)	429, 441, 514, 607
EcoRV	GATATC	1 cut(s)	346
FaeI	CATG	3 cut(s)	119, 146, 706
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FaqI	GGGAC	2 cut(s)	713, 896
FatI	CATG	3 cut(s)	115, 142, 702
FauI	CCCGC	1 cut(s)	872
FauNDI	CATATG	1 cut(s)	913
Fnu4HI	GCNGC	3 cut(s)	9, 160, 176
FokI	GGATG	4 cut(s)	56, 458, 589, 857
Fsp4HI	GCNGC	3 cut(s)	9, 160, 176
GlaI	GCGC	2 cut(s)	474, 773
GluI	GCNGC	3 cut(s)	9, 160, 176
HaeII	RGCGCY	2 cut(s)	476, 775
HaeIII	GGCC	1 cut(s)	334
HhaI	GCGC	2 cut(s)	475, 774
Hin1II	CATG	3 cut(s)	119, 146, 706
Hin6I	GCGC	2 cut(s)	473, 772
HinP1I	GCGC	2 cut(s)	473, 772
HincII	GTYRAC	3 cut(s)	521, 691, 738
HindII	GTYRAC	3 cut(s)	521, 691, 738
HinfI	GANTC	6 cut(s)	47, 112, 275, 325, 374, 900
HpaI	GTTAAC	1 cut(s)	691
HphI	GGTGA	3 cut(s)	33, 284, 843
Hpy166II	GTNNAC	4 cut(s)	521, 691, 717, 738
Hpy188I	TCNGA	5 cut(s)	241, 299, 340, 568, 828
Hpy8I	GTNNAC	4 cut(s)	521, 691, 717, 738
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	2 cut(s)	303, 551
HpyCH4V	TGCA	5 cut(s)	84, 508, 593, 745, 840
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 481, 904
HpyF3I	CTNAG	2 cut(s)	106, 793
Hsp92II	CATG	3 cut(s)	119, 146, 706
HspAI	GCGC	2 cut(s)	473, 772
KspAI	GTTAAC	1 cut(s)	691
Kzo9I	GATC	3 cut(s)	250, 527, 648
Lsp1109I	GCAGC	2 cut(s)	162, 171
LweI	GCATC	3 cut(s)	602, 744, 857
MaeIII	GTNAC	3 cut(s)	221, 272, 580
MalI	GATC	3 cut(s)	252, 529, 650
MboI	GATC	3 cut(s)	250, 527, 648
MboII	GAAGA	9 cut(s)	91, 140, 353, 488, 551, 656, 668, 781, 818
MflI	RGATCY	1 cut(s)	648
MluCI	AATT	4 cut(s)	197, 319, 452, 721
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	687
MroXI	GAANNNNTTC	1 cut(s)	660
MseI	TTAA	2 cut(s)	413, 690
MslI	CAYNNNNRTG	1 cut(s)	672
MspA1I	CMGCKG	1 cut(s)	8
MspR9I	CCNGG	4 cut(s)	431, 443, 516, 609
Mva1269I	GAATGC	2 cut(s)	680, 785
MvaI	CCWGG	4 cut(s)	431, 443, 516, 609
MwoI	GCNNNNNNNGC	3 cut(s)	172, 481, 904
NdeI	CATATG	1 cut(s)	913
NdeII	GATC	3 cut(s)	250, 527, 648
NlaIII	CATG	3 cut(s)	119, 146, 706
NmuCI	GTSAC	2 cut(s)	272, 580
NspI	RCATGY	2 cut(s)	146, 706
PciI	ACATGT	1 cut(s)	702
PctI	GAATGC	2 cut(s)	680, 785
PdmI	GAANNNNTTC	1 cut(s)	660
PfeI	GAWTC	5 cut(s)	47, 112, 325, 374, 900
PfoI	TCCNGGA	1 cut(s)	607
PkrI	GCNGC	3 cut(s)	10, 161, 177
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PscI	ACATGT	1 cut(s)	702
PshBI	ATTAAT	1 cut(s)	413
Psp6I	CCWGG	4 cut(s)	429, 441, 514, 607
PspGI	CCWGG	4 cut(s)	429, 441, 514, 607
PspPI	GGNCC	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	648
RseI	CAYNNNNRTG	1 cut(s)	672
Rsr2I	CGGWCCG	1 cut(s)	299
RsrII	CGGWCCG	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	413, 690
SatI	GCNGC	3 cut(s)	9, 160, 176
Sau3AI	GATC	3 cut(s)	250, 527, 648
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	4 cut(s)	431, 443, 516, 609
SfaNI	GCATC	3 cut(s)	602, 744, 857
SfcI	CTRYAG	1 cut(s)	382
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	672
Sse9I	AATT	4 cut(s)	197, 319, 452, 721
SsiI	CCGC	3 cut(s)	8, 60, 879
StyD4I	CCNGG	4 cut(s)	429, 441, 514, 607
TaaI	ACNGT	2 cut(s)	303, 551
TaqI	TCGA	3 cut(s)	150, 249, 278
TaqII	GACCGA	1 cut(s)	379
TasI	AATT	4 cut(s)	197, 319, 452, 721
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	5 cut(s)	47, 112, 325, 374, 900
Tru1I	TTAA	2 cut(s)	413, 690
Tru9I	TTAA	2 cut(s)	413, 690
TscAI	CASTG	3 cut(s)	426, 747, 847
TseFI	GTSAC	2 cut(s)	272, 580
TseI	GCWGC	2 cut(s)	159, 175
Tsp45I	GTSAC	2 cut(s)	272, 580
TspDTI	ATGAA	3 cut(s)	552, 673, 819
TspGWI	ACGGA	3 cut(s)	62, 661, 863
TspRI	CASTG	3 cut(s)	426, 747, 847
VpaK11BI	GGWCC	1 cut(s)	299
VspI	ATTAAT	1 cut(s)	413
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	2 cut(s)	146, 706
XmnI	GAANNNNTTC	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.