Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Forward (+)

18703356 .. 18711075

Gene Structure 7720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27450.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3654 bp

ATGTCAGTAGCAGCAATGGGGGTGTCTGATCCAAGCCAACTCCACTTGAAGAAGGAGCTAACCCAGATTCGAAAAGCCGCCCGCCTTCTCCGCGATCCGGGGACCACTGCCTCCTGGCGGTCCCCTCTTCCTTCCTCTAGATCCGCGGCGGGTCCGGCGGGTGCGGGAGCCCTTCCTTCTGCCTGTTCCACTTCCAACGGAGGCGGCGACAGTAAGAAGGTGTTCTTGTACAACTGGAAGGGCTCTTCCAAGTCGTCGAGGAATGATGACTACGAAGACGATGATGAGGATGAAGATTATGGTGTTGAAGAGGAGGACGAAGCCTCTTCAGTTGCGGCATTGAGTGTGGATGACACCTTGAGCCACGGAGGAGATTCCAGGAGTGAAACTGGGGGTGGTCAGAGCCGGTCATTGATGATGCTGCGGCGCAGGTATCCGAATCTCCTGCCGCCGATCAAGGATGGTGGTAAGAAAGGAAGCAAGTCACATTCTCATGTTTTGTCGAAATATCAGCAGAAAGAGTTGATTCTTGGCAGGAACTTGAGGAAGGGCGAGCAGTCTGATGACACTGAGGATTACTCTAATTCGGAGATTAGAGGGGCTTCCCCGTTGCTGTTGAAGCTTAGGCACAAGCATTGGCCTCCGGCCTCGAGTAATGTTAGGAGGAATGATAGTAGAGCAGAGGACTCTTCTTATTGCTATAGCACTCCTGCATTGTCGACTAGCTCTTATAATAGGTATGGTGTTCGGAATCCGAGTACCGTTGGATCTTGGGATGGAACTGCAACTTCAATGAATGATGGGGATGATGAGGTTGAGGATCGTTTGGATTTTCCGGGTAGCAAGGGATGTGGGATTCCTTGTTATTGGTCTAAAAAGACACCTAAGCACAGAGGCATGTATGGAAGCTGTTGCTCCCCTTCACTTTCTGATACTATAAGGAGAAAAGGAAGTGTCCTTTTGTGTGGGAGTCAAAATGTTTATCCTAGACGACGGGGGTCTTCGTCAGGTTCCAATAAGCGGAGAATTGCATCTAGAAGTGCCCAAGGTGTTCTGCCATTGCTAAACAATAGTGGTGATGGTAGGGGAGGGTCATCCATAGGAACTGGGAGGAGTGATGACGAACTTTCCACAAACTTTGGGGAGCTTGATTTGGAAGCTTTGAGTAGATTAGATGGGCGGAGATGGTCATCAAGCTGCCGAAGTCAAGAAGGCTTGGAGATTGTAGCTCTGAATGGAGTGGGGGAAGAGGGAAGCACTCCAGAGAGTGTTACAAGTTTTAGCCAGAAGTACAAGCCCATGTTCTTTCGTGAATTGATTGGCCAGAATATTGTGGTGCAATCACTTATCAATGCTATTGGTAGGTGCAGGATTGCTCCTGTTTATCTTTTCCAGGGACCCCGTGGAACTGGAAAAACGTCGACAGCTAGAATTTTTGCTGCTTCCTTGAACTGCCTAGCTCCTGATGAAACTAAACCCTGTGGCTACTGTAGGGAGTGCACTGATTTTATGTCTGGTAAGAACAAAGATCTATTGGAAGTTGATGGTACCAATAAGAAAGGAATTGATAAAGTTAGGTACCTATTGAAAACTCTATCTGTGGCTCCCTCATCAGCATCATCAAGGTATAAGGTTTTTGTGATTGATGAGTGTCACTTACTGCCTTCCAAGACATGGTTGGCATTTCTTAAATATTTGGAAGAACCACCGGAGCGAGTTGTCTTTATATTCGTTACAACTGATTTGGATAATGTTCCTCGTACTATTCAATCTCGGTGTCAGAAATATCTCTTCAACAAAATTAAGGATAGTGAGATTGTGGCCAGGTTGAGGAAAATTGCTGTTCAAGAGAACCTAGATGTTGAACCAGATGCTTTAGATTTGATTGCTCTGAATGCAGATGGTTCACTTCGAGATGCAGAAACTATGTTGGACCAGTTGAGTTTGCTGGGGAAAAGAATCTCAACGTCTCTTGTGAATGAACTTGTGGGAGTTGTTTCCGATGACAAGTTACTAGAACTTTTGGAGTTAGCGATGTCATCGGACACTGCAGAAACAGTGAAAAGGGCCAGAGATTTGATGGACTCTGGGGTCGATCCCATGGTTTTGATGTCTCAGTTGGCCAGCCTAATTATGGATATCATTGCGGGAACCAACAGTACCAATGATGTCAAACATGACTCCTTATATGGCGCCCAGAACTTGACCGAAGCAGAATTGGAGAGATTAAAACATGCTTTGAAGATTCTTTCGGAGGCTGAAAAACAGCTTAGAGTTTCAAGCGAGCGCTCAACATGGTTTACAGCAACTCTGTTGCAGCTTGGTTCATTGCCTTCCCCAGACCTTAGTCACTCATGCAGCAGAAGGCATAGCTGCAAGACAACCGAGGATGGTTCTTCAAGTGCTTCAACTTCAAGAGAAGCTGCCACTTACAAACAAAAGTTAGACGGTCACTATATGCTTCAAAAATCGACTCATAATTCTGTACAAAGAGCACCAAATGAAAATTCCAACCATCGGGGCGATTCATTGTCAAGAAATAGTGGTTTTGGTGTGAATCCCAAGCCCTCACATGATCAGTTCGTGGATAGTGGTGCCTCAACTCCCTTGTGTGGAAATGTTATGGCTGGAAATATGAGCCTTAGTTGTGTAAACTCTGAAAAGTTAAATGATATCTGGGCACAGTGTATCGAGAAGTGTCATTCAAAGACGTTGAGGCAGCTGCTACATTCTCATGGAAAGCTAGTGTCAATATCTGAAGCCGAAGCTGAAGGTGTTCTGGTTGCTTATGTTGCATTTGAAGATGGAAGTATCAAATCTAGAGCAGAGAGATTTGTGAGCAGTATCACGAATTCAATGGAAATAGTTCTCAGGCGCAACGTAGAGGTTAGAATTGTCCACTTGCCAGGTGGGGAGGCTTCTCTAAATTGTCCAAGTCCAGTTCACTTGCTGGAAGGTCTAAAGCAGGCAGAACTTGTCAGGGAAAGGAAACGAGTTGGTTCAAATGCCACAGATGGTTATTCCAATTGTTCTCTGTTTCTGGATGGGACCCACAAGTCAACCTCTGATTCATCAGACTTAGTCGCTGATGGCAATGCTCAAACAAGTGATACAAGAGAGAGCAGACAGGAGATCCCAATGCAGAGAATTGAATCCATTATTCGTGACCAAAGGTTAGAAACTGCGTGGCTACAGGTTGTAGAGAAAGGCACTCCTGGTTCGTTGAGTCGTTCGAAACCTGAAAAAAATCAAGTCCTGCCTCAGGAGGGCATTTATTACGAAGATCAGATGGAATCAATAAATTTAATGGGATTATCCTCTCAGCAATGGGATGATGGATTAAACCATGAAGTAAAAATTTTGAGAGCTAACAGTGGGAAGGTCGTTCAACAGGACCAAATCGGTAAAAGGGTTGATCATTATCCTATGTCACCAAGTTTACTACATGAGAAGGGCAAGTCTGATAAAGATAACCTGGGCGATGAATCAGGGTCAGGTAGAGGAGGTTGCAGCGGATTTTTTCGATGTTATGACACCAGACGTCGTAAAAGAGGGAAGGTAAAAGGGACCCCTGTTCAACCACGGAAAGGTAGACAGTTTTCATTGTTTGGTGTGTGTGGGAAGTCAAGGAAGACAGCAGAGAAGACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

1218

Amino Acids

133.45

Weight (kDa)

8.42

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	442 - 601	5e-34	DNA polymerase III, delta subunit
AAA	PF00004	463 - 598	1.4e-08	ATPase family associated with various cellular activities (AAA)
DNAX_ATPase_lid	PF22608	605 - 646	7.1e-10	DNA polymerase III clamp loader subunit, ATPase lid domain
DNA_pol3_gamma3	PF12169	655 - 780	1.5e-08	DNA polymerase III subunits gamma and tau domain III
DnaA_N-like_STI	PF23007	882 - 965	1.4e-29	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
AasI	GACNNNNNNGTC	2 cut(s)	2090, 3055
AatII	GACGTC	1 cut(s)	3544
Acc36I	ACCTGC	1 cut(s)	420
Acc65I	GGTACC	2 cut(s)	1547, 1578
AccB1I	GGYRCC	4 cut(s)	1547, 1578, 2192, 2594
AccB7I	CCANNNNNTGG	1 cut(s)	1674
AccI	GTMKAC	3 cut(s)	719, 1421, 3592
AccII	CGCG	2 cut(s)	93, 146
AclWI	GGATC	7 cut(s)	23, 89, 135, 775, 828, 2090, 3127
AcoI	YGGCCR	3 cut(s)	1321, 1821, 2121
AcsI	RAATTY	5 cut(s)	1431, 2506, 2851, 3301, 3357
AcuI	CTGAAG	3 cut(s)	312, 2778, 2790
AcyI	GRCGYC	2 cut(s)	2193, 3541
AfaI	GTAC	8 cut(s)	230, 760, 1292, 1549, 1580, 1762, 2161, 2487
AfeI	AGCGCT	1 cut(s)	2288
AjnI	CCWGG	7 cut(s)	113, 377, 1392, 1823, 2905, 3214, 3474
AjuI	GAANNNNNNNTTGG	2 cut(s)	2491, 2523
Alw21I	GWGCWC	2 cut(s)	1502, 2497
Alw26I	GTCTC	2 cut(s)	1974, 2118
Alw44I	GTGCAC	1 cut(s)	1498
AlwI	GGATC	7 cut(s)	23, 89, 135, 775, 828, 2090, 3127
Ama87I	CYCGRG	1 cut(s)	649
Aor51HI	AGCGCT	1 cut(s)	2288
AoxI	GGCC	6 cut(s)	638, 645, 1321, 1821, 2067, 2121
ApaLI	GTGCAC	1 cut(s)	1498
ApoI	RAATTY	5 cut(s)	1431, 2506, 2851, 3301, 3357
Asp700I	GAANNNNTTC	3 cut(s)	221, 2775, 2865
Asp718I	GGTACC	2 cut(s)	1547, 1578
AspLEI	GCGC	4 cut(s)	429, 2195, 2289, 2877
AspS9I	GGNCC	9 cut(s)	102, 120, 152, 1397, 1933, 2067, 3048, 3394, 3567
AsuC2I	CCSGG	2 cut(s)	99, 837
AsuHPI	GGTGA	2 cut(s)	1088, 3423
AsuII	TTCGAA	2 cut(s)	70, 3233
AvaI	CYCGRG	1 cut(s)	649
AvaII	GGWCC	8 cut(s)	102, 120, 152, 1397, 1933, 3048, 3394, 3567
AxyI	CCTNAGG	1 cut(s)	3261
BaeGI	GKGCMC	3 cut(s)	1045, 1502, 2683
BalI	TGGCCA	3 cut(s)	1323, 1823, 2123
BanI	GGYRCC	4 cut(s)	1547, 1578, 2192, 2594
BanII	GRGCYC	2 cut(s)	172, 245
BbsI	GAAGAC	4 cut(s)	282, 993, 3638, 3650
Bbv12I	GWGCWC	2 cut(s)	1502, 2497
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BciT130I	CCWGG	7 cut(s)	115, 379, 1394, 1825, 2907, 3216, 3476
BciVI	GTATCC	1 cut(s)	444
BclI	TGATCA	2 cut(s)	2575, 3415
BcnI	CCSGG	2 cut(s)	99, 837
BcoDI	GTCTC	2 cut(s)	1974, 2118
BfmI	CTRYAG	4 cut(s)	700, 1489, 2049, 3191
BfoI	RGCGCY	2 cut(s)	2196, 2290
BfuAI	ACCTGC	1 cut(s)	420
BfuI	GTATCC	1 cut(s)	444
BglII	AGATCT	1 cut(s)	1528
Bme1390I	CCNGG	9 cut(s)	99, 115, 379, 837, 1394, 1825, 2907, 3216, 3476
Bme18I	GGWCC	8 cut(s)	102, 120, 152, 1397, 1933, 3048, 3394, 3567
BmeT110I	CYCGRG	1 cut(s)	649
BmgT120I	GGNCC	9 cut(s)	102, 120, 152, 1397, 1933, 2067, 3048, 3394, 3567
BmrFI	CCNGG	9 cut(s)	99, 115, 379, 837, 1394, 1825, 2907, 3216, 3476
BmrI	ACTGGG	2 cut(s)	399, 1116
BmsI	GCATC	5 cut(s)	408, 1040, 1625, 1861, 1906
BmuI	ACTGGG	2 cut(s)	399, 1116
BoxI	GACNNNNGTC	2 cut(s)	997, 2346
BpiI	GAAGAC	4 cut(s)	282, 993, 3638, 3650
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BpmI	CTGGAG	1 cut(s)	1245
Bpu10I	CCTNAGC	2 cut(s)	623, 885
Bpu14I	TTCGAA	2 cut(s)	70, 3233
BpuEI	CTTGAG	2 cut(s)	379, 562
BpuMI	CCSGG	2 cut(s)	99, 837
BsaBI	GATNNNNATC	2 cut(s)	1189, 3420
BsaHI	GRCGYC	2 cut(s)	2193, 3541
BsaWI	WCCGGW	1 cut(s)	1708
Bse118I	RCCGGY	1 cut(s)	405
Bse1I	ACTGG	6 cut(s)	239, 394, 1111, 1414, 1936, 2939
Bse21I	CCTNAGG	1 cut(s)	3261
Bse3DI	GCAATG	6 cut(s)	21, 1058, 2142, 2327, 3100, 3332
Bse8I	GATNNNNATC	2 cut(s)	1189, 3420
BseBI	CCWGG	7 cut(s)	115, 379, 1394, 1825, 2907, 3216, 3476
BseJI	GATNNNNATC	2 cut(s)	1189, 3420
BseMI	GCAATG	6 cut(s)	21, 1058, 2142, 2327, 3100, 3332
BseMII	CTCAG	5 cut(s)	561, 2129, 2884, 3275, 3335
BseNI	ACTGG	6 cut(s)	239, 394, 1111, 1414, 1936, 2939
BseRI	GAGGAG	4 cut(s)	326, 384, 1126, 3516
BseSI	GKGCMC	3 cut(s)	1045, 1502, 2683
BseYI	CCCAGC	1 cut(s)	1948
BsgI	GTGCAG	1 cut(s)	1387
Bsh1236I	CGCG	2 cut(s)	93, 146
BshFI	GGCC	6 cut(s)	640, 647, 1323, 1823, 2069, 2123
BshNI	GGYRCC	4 cut(s)	1547, 1578, 2192, 2594
BsiHKAI	GWGCWC	2 cut(s)	1502, 2497
BsiHKCI	CYCGRG	1 cut(s)	649
BsiSI	CCGG	6 cut(s)	98, 155, 406, 644, 836, 1709
BslFI	GGGAC	5 cut(s)	106, 115, 1410, 3061, 3580
BsmAI	GTCTC	2 cut(s)	1974, 2118
BsmBI	CGTCTC	1 cut(s)	1974
BsmFI	GGGAC	5 cut(s)	106, 115, 1410, 3061, 3580
BsmI	GAATGC	1 cut(s)	1900
BsnI	GGCC	6 cut(s)	640, 647, 1323, 1823, 2069, 2123
BsoBI	CYCGRG	1 cut(s)	649
Bsp119I	TTCGAA	2 cut(s)	70, 3233
Bsp1286I	GDGCHC	6 cut(s)	172, 245, 1045, 1502, 2497, 2683
Bsp1407I	TGTACA	2 cut(s)	228, 2485
Bsp19I	CCATGG	1 cut(s)	2100
BspANI	GGCC	6 cut(s)	640, 647, 1323, 1823, 2069, 2123
BspCNI	CTCAG	5 cut(s)	562, 2128, 2883, 3274, 3334
BspFNI	CGCG	2 cut(s)	93, 146
BspMAI	CTGCAG	1 cut(s)	2053
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	7 cut(s)	23, 89, 135, 775, 828, 2090, 3127
BspQI	GCTCTTC	1 cut(s)	250
BspT104I	TTCGAA	2 cut(s)	70, 3233
BspT107I	GGYRCC	4 cut(s)	1547, 1578, 2192, 2594
BsrDI	GCAATG	6 cut(s)	21, 1058, 2142, 2327, 3100, 3332
BsrFI	RCCGGY	1 cut(s)	405
BsrGI	TGTACA	2 cut(s)	228, 2485
BsrI	ACTGG	6 cut(s)	239, 394, 1111, 1414, 1936, 2939
BssAI	RCCGGY	1 cut(s)	405
BssNI	GRCGYC	2 cut(s)	2193, 3541
BssT1I	CCWWGG	2 cut(s)	1045, 2100
Bst2UI	CCWGG	7 cut(s)	115, 379, 1394, 1825, 2907, 3216, 3476
Bst4CI	ACNGT	9 cut(s)	212, 763, 1490, 2059, 2159, 2450, 2685, 3374, 3597
Bst6I	CTCTTC	7 cut(s)	132, 250, 303, 331, 694, 1242, 1796
BstACI	GRCGYC	2 cut(s)	2193, 3541
BstAUI	TGTACA	2 cut(s)	228, 2485
BstBI	TTCGAA	2 cut(s)	70, 3233
BstC8I	GCNNGC	5 cut(s)	82, 554, 2125, 2285, 2967
BstDSI	CCRYGG	5 cut(s)	144, 364, 1402, 2100, 3581
BstENI	CCTNNNNNAGG	1 cut(s)	3260
BstFNI	CGCG	2 cut(s)	93, 146
BstH2I	RGCGCY	2 cut(s)	2196, 2290
BstHHI	GCGC	4 cut(s)	429, 2195, 2289, 2877
BstMAI	GTCTC	2 cut(s)	1974, 2118
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 155, 619, 1895, 2792
BstNI	CCWGG	7 cut(s)	115, 379, 1394, 1825, 2907, 3216, 3476
BstNSI	RCATGY	2 cut(s)	901, 2237
BstPAI	GACNNNNGTC	2 cut(s)	997, 2346
BstSCI	CCNGG	9 cut(s)	97, 113, 377, 835, 1392, 1823, 2905, 3214, 3474
BstSFI	CTRYAG	4 cut(s)	700, 1489, 2049, 3191
BstSLI	GKGCMC	3 cut(s)	1045, 1502, 2683
BstUI	CGCG	2 cut(s)	93, 146
BstV2I	GAAGAC	4 cut(s)	282, 993, 3638, 3650
BstX2I	RGATCY	4 cut(s)	140, 767, 1528, 3132
BstYI	RGATCY	4 cut(s)	140, 767, 1528, 3132
Bsu36I	CCTNAGG	1 cut(s)	3261
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	6 cut(s)	640, 647, 1323, 1823, 2069, 2123
BtgI	CCRYGG	5 cut(s)	144, 364, 1402, 2100, 3581
BtgZI	GCGATG	2 cut(s)	2048, 3495
BtsI	GCAGTG	2 cut(s)	105, 2046
BtsIMutI	CAGTG	7 cut(s)	105, 567, 1500, 2046, 2064, 2690, 3379
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	5 cut(s)	82, 554, 2125, 2285, 2967
CfoI	GCGC	4 cut(s)	429, 2195, 2289, 2877
Cfr10I	RCCGGY	1 cut(s)	405
Cfr13I	GGNCC	9 cut(s)	102, 120, 152, 1397, 1933, 2067, 3048, 3394, 3567
Cfr42I	CCGCGG	1 cut(s)	147
Csp6I	GTAC	8 cut(s)	229, 759, 1291, 1548, 1579, 1761, 2160, 2486
CspCI	CAANNNNNGTGG	6 cut(s)	445, 480, 832, 867, 1120, 1155
CviQI	GTAC	8 cut(s)	229, 759, 1291, 1548, 1579, 1761, 2160, 2486
DinI	GGCGCC	1 cut(s)	2194
DrdI	GACNNNNNNGTC	2 cut(s)	2090, 3055
DseDI	GACNNNNNNGTC	2 cut(s)	2090, 3055
EaeI	YGGCCR	3 cut(s)	1321, 1821, 2121
Eam1104I	CTCTTC	7 cut(s)	132, 250, 303, 331, 694, 1242, 1796
EarI	CTCTTC	7 cut(s)	132, 250, 303, 331, 694, 1242, 1796
EciI	GGCGGA	1 cut(s)	1195
Eco130I	CCWWGG	2 cut(s)	1045, 2100
Eco24I	GRGCYC	2 cut(s)	172, 245
Eco32I	GATATC	2 cut(s)	2140, 2674
Eco47I	GGWCC	8 cut(s)	102, 120, 152, 1397, 1933, 3048, 3394, 3567
Eco47III	AGCGCT	1 cut(s)	2288
Eco57I	CTGAAG	3 cut(s)	312, 2778, 2790
Eco81I	CCTNAGG	1 cut(s)	3261
Eco88I	CYCGRG	1 cut(s)	649
EcoNI	CCTNNNNNAGG	1 cut(s)	3260
EcoO109I	RGGNCCY	3 cut(s)	1397, 3048, 3567
EcoRI	GAATTC	1 cut(s)	2851
EcoRII	CCWGG	7 cut(s)	113, 377, 1392, 1823, 2905, 3214, 3474
EcoRV	GATATC	2 cut(s)	2140, 2674
EcoT14I	CCWWGG	2 cut(s)	1045, 2100
EcoT38I	GRGCYC	2 cut(s)	172, 245
EgeI	GGCGCC	1 cut(s)	2194
EheI	GGCGCC	1 cut(s)	2194
ErhI	CCWWGG	2 cut(s)	1045, 2100
Esp3I	CGTCTC	1 cut(s)	1974
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	5 cut(s)	106, 115, 1410, 3061, 3580
FauI	CCCGC	5 cut(s)	89, 142, 151, 157, 2140
FbaI	TGATCA	2 cut(s)	2575, 3415
FblI	GTMKAC	3 cut(s)	719, 1421, 3592
FriOI	GRGCYC	2 cut(s)	172, 245
GlaI	GCGC	4 cut(s)	428, 2194, 2288, 2876
GsaI	CCCAGC	1 cut(s)	1952
GsuI	CTGGAG	1 cut(s)	1245
HaeII	RGCGCY	2 cut(s)	2196, 2290
HaeIII	GGCC	6 cut(s)	640, 647, 1323, 1823, 2069, 2123
HapII	CCGG	6 cut(s)	98, 155, 406, 644, 836, 1709
HhaI	GCGC	4 cut(s)	429, 2195, 2289, 2877
Hin1I	GRCGYC	2 cut(s)	2193, 3541
Hin6I	GCGC	4 cut(s)	427, 2193, 2287, 2875
HinP1I	GCGC	4 cut(s)	427, 2193, 2287, 2875
HincII	GTYRAC	3 cut(s)	720, 1422, 3060
HindII	GTYRAC	3 cut(s)	720, 1422, 3060
HindIII	AAGCTT	2 cut(s)	620, 1158
HpaII	CCGG	6 cut(s)	98, 155, 406, 644, 836, 1709
HphI	GGTGA	2 cut(s)	1088, 3423
Hpy99I	CGWCG	4 cut(s)	259, 996, 1423, 3546
HpyCH4III	ACNGT	9 cut(s)	212, 763, 1490, 2059, 2159, 2450, 2685, 3374, 3597
HpyCH4IV	ACGT	5 cut(s)	1418, 1967, 2711, 2880, 3541
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 155, 619, 1895, 2792
HpySE526I	ACGT	5 cut(s)	1418, 1967, 2711, 2880, 3541
Hsp92I	GRCGYC	2 cut(s)	2193, 3541
HspAI	GCGC	4 cut(s)	427, 2193, 2287, 2875
KasI	GGCGCC	1 cut(s)	2192
KflI	GGGWCCC	3 cut(s)	1397, 3048, 3567
KpnI	GGTACC	2 cut(s)	1551, 1582
Ksp22I	TGATCA	2 cut(s)	2575, 3415
KspI	CCGCGG	1 cut(s)	147
LguI	GCTCTTC	1 cut(s)	250
LmnI	GCTCC	8 cut(s)	55, 167, 920, 1144, 1381, 1465, 1609, 1711
LweI	GCATC	5 cut(s)	408, 1040, 1625, 1861, 1906
MaeII	ACGT	5 cut(s)	1418, 1967, 2711, 2880, 3541
MaeIII	GTNAC	9 cut(s)	483, 1270, 1652, 1732, 2010, 2348, 2450, 3164, 3429
MfeI	CAATTG	1 cut(s)	3025
MflI	RGATCY	4 cut(s)	140, 767, 1528, 3132
MhlI	GDGCHC	6 cut(s)	172, 245, 1045, 1502, 2497, 2683
MlsI	TGGCCA	3 cut(s)	1323, 1823, 2123
MluNI	TGGCCA	3 cut(s)	1323, 1823, 2123
Mly113I	GGCGCC	1 cut(s)	2193
MlyI	GAGTC	6 cut(s)	680, 979, 2078, 2174, 2467, 3235
MmeI	TCCRAC	4 cut(s)	219, 745, 1911, 2535
Mox20I	TGGCCA	3 cut(s)	1323, 1823, 2123
MroXI	GAANNNNTTC	3 cut(s)	221, 2775, 2865
MscI	TGGCCA	3 cut(s)	1323, 1823, 2123
MseI	TTAA	6 cut(s)	1689, 1803, 2228, 2666, 3305, 3341
MslI	CAYNNNNRTG	2 cut(s)	492, 2733
Msp20I	TGGCCA	3 cut(s)	1323, 1823, 2123
MspA1I	CMGCKG	3 cut(s)	146, 2722, 3513
MspI	CCGG	6 cut(s)	98, 155, 406, 644, 836, 1709
MspR9I	CCNGG	9 cut(s)	99, 115, 379, 837, 1394, 1825, 2907, 3216, 3476
MunI	CAATTG	1 cut(s)	3025
Mva1269I	GAATGC	1 cut(s)	1900
MvaI	CCWGG	7 cut(s)	115, 379, 1394, 1825, 2907, 3216, 3476
MvnI	CGCG	2 cut(s)	93, 146
MwoI	GCNNNNNNNGC	5 cut(s)	90, 155, 619, 1895, 2792
NarI	GGCGCC	1 cut(s)	2193
NciI	CCSGG	2 cut(s)	99, 837
NcoI	CCATGG	1 cut(s)	2100
NmuCI	GTSAC	6 cut(s)	483, 1652, 2348, 2450, 3164, 3429
NspI	RCATGY	2 cut(s)	901, 2237
NspV	TTCGAA	2 cut(s)	70, 3233
PaeR7I	CTCGAG	1 cut(s)	649
PciSI	GCTCTTC	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	1900
PdmI	GAANNNNTTC	3 cut(s)	221, 2775, 2865
PflFI	GACNNNGTC	1 cut(s)	3080
PflMI	CCANNNNNTGG	1 cut(s)	1674
PfoI	TCCNGGA	1 cut(s)	377
PleI	GAGTC	6 cut(s)	680, 978, 2078, 2174, 2467, 3234
PluTI	GGCGCC	1 cut(s)	2196
PpsI	GAGTC	6 cut(s)	680, 978, 2078, 2174, 2467, 3234
PpuMI	RGGWCCY	3 cut(s)	1397, 3048, 3567
PshAI	GACNNNNGTC	2 cut(s)	997, 2346
PsiI	TTATAA	1 cut(s)	732
Psp5II	RGGWCCY	3 cut(s)	1397, 3048, 3567
Psp6I	CCWGG	7 cut(s)	113, 377, 1392, 1823, 2905, 3214, 3474
PspFI	CCCAGC	1 cut(s)	1948
PspGI	CCWGG	7 cut(s)	113, 377, 1392, 1823, 2905, 3214, 3474
PspPI	GGNCC	9 cut(s)	102, 120, 152, 1397, 1933, 2067, 3048, 3394, 3567
PspPPI	RGGWCCY	3 cut(s)	1397, 3048, 3567
PspXI	VCTCGAGB	1 cut(s)	649
PsrI	GAACNNNNNNTAC	2 cut(s)	2143, 2175
PstI	CTGCAG	1 cut(s)	2053
PsuI	RGATCY	4 cut(s)	140, 767, 1528, 3132
PsyI	GACNNNGTC	1 cut(s)	3080
PvuII	CAGCTG	1 cut(s)	2722
RsaI	GTAC	8 cut(s)	230, 760, 1292, 1549, 1580, 1762, 2161, 2487
RsaNI	GTAC	8 cut(s)	229, 759, 1291, 1548, 1579, 1761, 2160, 2486
RseI	CAYNNNNRTG	2 cut(s)	492, 2733
SacII	CCGCGG	1 cut(s)	147
SalI	GTCGAC	2 cut(s)	718, 1420
SapI	GCTCTTC	1 cut(s)	250
SaqAI	TTAA	6 cut(s)	1689, 1803, 2228, 2666, 3305, 3341
Sau96I	GGNCC	9 cut(s)	102, 120, 152, 1397, 1933, 2067, 3048, 3394, 3567
SchI	GAGTC	6 cut(s)	680, 979, 2078, 2174, 2467, 3235
ScrFI	CCNGG	9 cut(s)	99, 115, 379, 837, 1394, 1825, 2907, 3216, 3476
SduI	GDGCHC	6 cut(s)	172, 245, 1045, 1502, 2497, 2683
SfaNI	GCATC	5 cut(s)	408, 1040, 1625, 1861, 1906
SfcI	CTRYAG	4 cut(s)	700, 1489, 2049, 3191
SfoI	GGCGCC	1 cut(s)	2194
Sfr274I	CTCGAG	1 cut(s)	649
Sfr303I	CCGCGG	1 cut(s)	147
SfuI	TTCGAA	2 cut(s)	70, 3233
SgrBI	CCGCGG	1 cut(s)	147
SinI	GGWCC	8 cut(s)	102, 120, 152, 1397, 1933, 3048, 3394, 3567
SlaI	CTCGAG	1 cut(s)	649
SmiMI	CAYNNNNRTG	2 cut(s)	492, 2733
SmlI	CTYRAG	3 cut(s)	358, 541, 649
SmoI	CTYRAG	3 cut(s)	358, 541, 649
SspDI	GGCGCC	1 cut(s)	2192
SspI	AATATT	2 cut(s)	1330, 1694
StyD4I	CCNGG	9 cut(s)	97, 113, 377, 835, 1392, 1823, 2905, 3214, 3474
StyI	CCWWGG	2 cut(s)	1045, 2100
TaaI	ACNGT	9 cut(s)	212, 763, 1490, 2059, 2159, 2450, 2685, 3374, 3597
TaiI	ACGT	5 cut(s)	1421, 1970, 2714, 2883, 3544
TaqII	GACCGA	1 cut(s)	2222
TatI	WGTACW	3 cut(s)	228, 1290, 2485
TauI	GCSGC	6 cut(s)	80, 149, 207, 338, 427, 451
Tru1I	TTAA	6 cut(s)	1689, 1803, 2228, 2666, 3305, 3341
Tru9I	TTAA	6 cut(s)	1689, 1803, 2228, 2666, 3305, 3341
TscAI	CASTG	7 cut(s)	112, 574, 1507, 2053, 2064, 2690, 3379
TseFI	GTSAC	6 cut(s)	483, 1652, 2348, 2450, 3164, 3429
Tsp45I	GTSAC	6 cut(s)	483, 1652, 2348, 2450, 3164, 3429
TspGWI	ACGGA	3 cut(s)	213, 381, 3598
TspRI	CASTG	7 cut(s)	112, 574, 1507, 2053, 2064, 2690, 3379
Tth111I	GACNNNGTC	1 cut(s)	3080
Van91I	CCANNNNNTGG	1 cut(s)	1674
VneI	GTGCAC	1 cut(s)	1498
VpaK11BI	GGWCC	8 cut(s)	102, 120, 152, 1397, 1933, 3048, 3394, 3567
XagI	CCTNNNNNAGG	1 cut(s)	3260
XapI	RAATTY	5 cut(s)	1431, 2506, 2851, 3301, 3357
XbaI	TCTAGA	3 cut(s)	137, 1034, 2819
XceI	RCATGY	2 cut(s)	901, 2237
XcmI	CCANNNNNNNNNTGG	5 cut(s)	1400, 1675, 2077, 2131, 2906
XhoI	CTCGAG	1 cut(s)	649
XmiI	GTMKAC	3 cut(s)	719, 1421, 3592
XmnI	GAANNNNTTC	3 cut(s)	221, 2775, 2865
ZraI	GACGTC	1 cut(s)	3542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.