Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Forward (+)

38004701 .. 38012899

Gene Structure 8199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG339400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3543 bp

ATGTCAATAGCAGCAATGGGGGTGTCTGATCCAAGCCAACTCCACTTGAAGAAAGAGCTCACCCAGATTCGAAAGGCCGCCCGCGTTCTCCGCGATCCGGGGACCACTTCTTCTTGGCGCTCTCCTTTGGCTTCCTCCAGATCTGCGGCGCCGGGAGCGGCGGGGGTTCCTTCTACTTGTTCCACTTCCCACAATACCAACAATGGCGGCGGCGACAACAAGAGGGTGTTCCTGTACAACTGGAAGGGCTCTTCCAAATCGTCGAGAAATGATGACTACGAAGAGGAGGATGAGGAGGAGGATGATTATGGTGTTGAAGATGAGGACGCTGCTTCTTCTTCTGTTGCGGCATTCAGTGTGGATGACAGCTTGAGCCACGGAGATTCCAGGAGTGACACTGGTGGTGGTGGTCAGAGCCGGTCGTTGATGATGCTCCGGCGCAGATATCCAAATCTTCTACCGCCGCTCAAAGATGGTAATGGTAGTGGTAATGGTAAGAAAGCAAGTAAGAAAATCGAATCCCATTCTCATGTTTTGTCCAAACATCAGCAGAAAGAGTTGATTCTTGGTAGGAACTTAAGAAAGGGAGGCCGGGATGAGCAATCCGATGACACTGAGGATTACTCTAATTCTGAGGATCTGAGGCACATTAGAGGGGCTTCCCCATTGCTCTTGAAGCTTAGGCACAAGCATTGGCCTCCGGCCTCCACTAATGTTAGGAGAAATGATAGTAGAGCAGAGGACTCTTCTTATTGCTATAGCACTCCTGCATTGTCGACTAGTTCTTATAATAGGTATGGTGTTCGGAATCCAAGTACTGTTGGATCTTGGGATGGAACTGCGACTTCAATGAATGATGGGGATGATGAGGTTGAGGACCATTTGGATATTCCCGGTAGCAAAGGATGTGGGATTCCTTGTTATTGGTCCAAAAAGACCCCAAAGCACAGAGGCATGTATGGAAGCTGTTGCTCCCCTTCGCTTTCTGATACTATAAGGAGAAAAGGAAGTGTCCTTTTGTGTGGAAGTCAAAATGTTTATCCTAGACGACAGGGGTCGTCTTCAGGTTCTATTAAGCGGAGAATTGCATCTAGAAGTGCGCAAGGTGTTCTGCCATTGCTAAACAATAGTGGTGATGGTAGAGGAGGGTCATCCATAGGAACTGGGAGGAGTGATGACGAACTCTCCACAAACTTTGGGGAACTTGATTTGGAAGCTTTGAGTAGATTGGATGGACGGAGATGGTCAAGCTGCCGAAGTCAAGAAGGCTTGGAGATTGTAGCTCTGAGTGGAGTGGGGGAAGAGGAAAGCACTCCAGATAGTGTTAGAAGTTTTAGCCAGAAGTACAAGCCGATGTTCTTTCGTGAATTGATTGGCCAGAATATTGTGGTGCAATCACTTATAAATGCTATTGATAGGTGTAGGATTGCTCCCGTTTATCTTTTCCAGGGACCCCGTGGAACTGGAAAAACGTCTACAGCTAGAATTTTTGCTGCTTCCTTGAATTGCCTAGCTCCTGATGAAACTAAACCCTGTGGCTACTGCAGGGAGTGCACTGATTTTATGTCTGGTAAGAACAAGGATCTATTGGAAGTTGATGGTACCAATAAGAAAGGAATTGATAAAGTCAGGTACCTATTGAAAACTCTATCTGTGGCTCCCTCATCAGCATCATCAAGGTATAAGGTTTTTGTGATTGATGAGTGTCACCTATTGCCTTCTAAGACATGGTTGGCATTTCTTAAATATTTGGAAGAACCACCGCAGCGAGTTGTCTTCATATTCATTACAACTGATTTGGATAATGTTCCTCGTACCATACAATCTCGGTGTCAGAAATATCTCTTCAACAAAATTAAGGATAGTGAGATTGTGGCCAGGTTGAGGAAAATTGCTGTTGAAGAGAACCTAGATGTTGAACCAGATGCATTAGATTTGATTGCTTTGAATGCAGATGGTTCACTTCGAGATGCAGAAACTATGTTGGACCAGTTGAGTTTGCTGGGGAAAAGAATTTCAACATCTCTTGTGAATGAACTTGTGGGAGTTGTTTCCGATGACAAGTTACTAGATCTTTTGGAGTTAGCAATGTCATCGGACACTGCAGAAACAGTGAAAAGGGCCAGAGATTTGATGGACTCCGGGGTTGATCCCATGGTTTTGATGTCTCAGTTGGCCAGCTTAATTATGGACATCATTGCGGGAACCAACGGTACTAATGATGTCAAACATGACTCCTTATATGGTGCTCGGAACTTGACCGAAGCAGAATTGGAGAGATTAAAACATGCTCTGAAGATTCTTTCGGAGGCTGAAAAGCAGCTTAGGGTTTCAAGTGAGCGCTCAACATGGTTTACAGCGACTCTGTTGCAGCTTGGTTCAGTGCCTTCTCCAGACCTTAGTCACTCATGCAGCAGGAGGCATAGCTGCAAGACAACTGAGGATGATTCTTCAAGTGCTTCAACCTCAAGAGAAGCAGCCACTTACAAACAGAAGTTAGATGGTCACTATATACTACAAAAATCAACTCAACATGCTTCTGTACAAAGAGCACCAAATGACAATTCCAACCATCAGGGAGATTCGTTGTCAAAAAATAATGGTTTCGGTGTGAATACCAAGCCCTCACATGATCAGTTTGTGGATAATGGGGCCTCAACTCCCTTGTGTGGAAATGTTATGGCTGGAAATATGAACCTTAGATGTGTAAACTCTGAAAAGTTAAATGATGTATGGGCACAGTGTATTGAGAAGTGTCATTCAAAGACATTGAGGCAGCTACTACATTCTCATGGAAAGCTAGTGTCTATATCTGAAGCTGAAGGTGTTCTGGTTGCTTATGTTGCATTTGAAGATGGAAGTATCAAATCTAGAGCAGAGAGGTTTGTGAGCAGTATCACAAATTCAATGGAAATAGTTCTCAGACGCAATGTCGAGGTTAGAATTGTCCACTTGCCAGGGGGGGAGGCTTCTCTAAATGGTCCAAGTCCAGTTCACTTGCTCGAAGGTCTAAAGCAGGCAGGAACTATGGCAGAACTTGTCAGGGAAAGGAAAAGAGTTGGTTCAAATGCCACAGATGGTTATTCCAATTGTTCTCTGTTTCTGGATGGGACCCACAAGTCAACCTCTGATTCATCAGACTTAGTTGCAGATGGCAATGCTCAAACAAGTGATACAAGAGAGAGCGGACAGGAGATCCCAATGCAGAGAATAGAATCCATTATTCGCGACCAAAGGTTAGAGACTGCGTGGCTACAGGTTGCAGAGAAAGGCACCTCTGGTTCTTTGAATCGTTTGAAACCTGAAAAGAATCAGGTCCTACCTCAGGATGGCATTTATTATGAAGATCAGATGGAATCGATGAATTCAATGGGATTATCCTCTCAGCAATGGGATGATGGATTAAACCATGAAGTAAAAATCTTGAGTGCTAACAGTGGGAAGGTCATTCAGCAGGACCAAATAGGTAAAAGGGTTGATCATTATCCTATGTCCCCGAGTTTACTACATGAAAAGGGCAAGTCCGACAAAGATCACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

1180

Amino Acids

129.4

Weight (kDa)

6.47

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	460 - 619	2.6e-34	DNA polymerase III, delta subunit
AAA	PF00004	481 - 616	8.1e-09	ATPase family associated with various cellular activities (AAA)
DNAX_ATPase_lid	PF22608	623 - 664	9.7e-10	DNA polymerase III clamp loader subunit, ATPase lid domain
DNA_pol3_gamma3	PF12169	673 - 794	1.5e-08	DNA polymerase III subunits gamma and tau domain III
DnaA_N-like_STI	PF23007	901 - 982	5.5e-31	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	789, 1403
AasI	GACNNNNNNGTC	1 cut(s)	3118
Acc16I	TGCGCA	1 cut(s)	1101
Acc65I	GGTACC	2 cut(s)	1601, 1632
AccB1I	GGYRCC	4 cut(s)	148, 1601, 1632, 3272
AccBSI	CCGCTC	3 cut(s)	158, 466, 3186
AccI	GTMKAC	2 cut(s)	776, 1475
AccII	CGCG	3 cut(s)	84, 93, 3228
AclWI	GGATC	7 cut(s)	23, 89, 645, 832, 1590, 2144, 3190
AcoI	YGGCCR	3 cut(s)	1375, 1875, 2175
AcsI	RAATTY	4 cut(s)	1485, 2013, 2902, 3364
AcuI	CTGAAG	4 cut(s)	1047, 2315, 2835, 2841
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	8 cut(s)	236, 817, 1346, 1603, 1634, 1816, 2215, 2544
AfeI	AGCGCT	1 cut(s)	2342
AfiI	CCNNNNNNNGG	5 cut(s)	97, 1884, 2669, 3325, 3329
AflII	CTTAAG	1 cut(s)	577
AhdI	GACNNNNNGTC	1 cut(s)	2930
AhlI	ACTAGT	1 cut(s)	779
AjnI	CCWGG	4 cut(s)	386, 1446, 1877, 2956
AjuI	GAANNNNNNNTTGG	2 cut(s)	2548, 2580
Alw21I	GWGCWC	4 cut(s)	60, 1556, 2251, 2554
Alw26I	GTCTC	2 cut(s)	2172, 3236
Alw44I	GTGCAC	1 cut(s)	1552
AlwI	GGATC	7 cut(s)	23, 89, 645, 832, 1590, 2144, 3190
Ama87I	CYCGRG	1 cut(s)	3496
Aor51HI	AGCGCT	1 cut(s)	2342
AoxI	GGCC	9 cut(s)	75, 589, 695, 702, 1375, 1875, 2121, 2175, 2652
ApaLI	GTGCAC	1 cut(s)	1552
ApoI	RAATTY	4 cut(s)	1485, 2013, 2902, 3364
Asp700I	GAANNNNTTC	2 cut(s)	2826, 2916
Asp718I	GGTACC	2 cut(s)	1601, 1632
AspLEI	GCGC	5 cut(s)	120, 151, 441, 1102, 2343
AsuC2I	CCSGG	5 cut(s)	99, 153, 593, 894, 2143
AsuHPI	GGTGA	4 cut(s)	52, 1145, 1700, 3527
AsuII	TTCGAA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	3496
AvaII	GGWCC	9 cut(s)	102, 877, 927, 1451, 1987, 2981, 3111, 3316, 3457
AxyI	CCTNAGG	1 cut(s)	3324
BaeGI	GKGCMC	2 cut(s)	1556, 2740
BalI	TGGCCA	3 cut(s)	1377, 1877, 2177
BanI	GGYRCC	4 cut(s)	148, 1601, 1632, 3272
BanII	GRGCYC	2 cut(s)	60, 251
BbsI	GAAGAC	2 cut(s)	1053, 1768
Bbv12I	GWGCWC	4 cut(s)	60, 1556, 2251, 2554
BcgI	CGANNNNNNTGC	4 cut(s)	2076, 2110, 2350, 2384
BciT130I	CCWGG	4 cut(s)	388, 1448, 1879, 2958
BclI	TGATCA	2 cut(s)	2632, 3478
BcnI	CCSGG	5 cut(s)	99, 153, 593, 894, 2143
BcoDI	GTCTC	2 cut(s)	2172, 3236
BcuI	ACTAGT	1 cut(s)	779
BfaI	CTAG	9 cut(s)	780, 1044, 1092, 1482, 1511, 1910, 2069, 2801, 2871
BfmI	CTRYAG	5 cut(s)	757, 1476, 1543, 2103, 3254
BfoI	RGCGCY	3 cut(s)	121, 152, 2344
BfrI	CTTAAG	1 cut(s)	577
BglII	AGATCT	2 cut(s)	140, 2071
BmcAI	AGTACT	1 cut(s)	817
Bme1390I	CCNGG	9 cut(s)	99, 153, 388, 593, 894, 1448, 1879, 2143, 2958
Bme18I	GGWCC	9 cut(s)	102, 877, 927, 1451, 1987, 2981, 3111, 3316, 3457
BmeRI	GACNNNNNGTC	1 cut(s)	2930
BmeT110I	CYCGRG	1 cut(s)	3496
BmrFI	CCNGG	9 cut(s)	99, 153, 388, 593, 894, 1448, 1879, 2143, 2958
BmrI	ACTGGG	1 cut(s)	1173
BmsI	GCATC	5 cut(s)	420, 1097, 1679, 1915, 1960
BmuI	ACTGGG	1 cut(s)	1173
BoxI	GACNNNNGTC	2 cut(s)	1054, 2400
BpiI	GAAGAC	2 cut(s)	1053, 1768
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BpmI	CTGGAG	3 cut(s)	121, 1299, 2376
Bpu10I	CCTNAGC	2 cut(s)	680, 2324
Bpu14I	TTCGAA	1 cut(s)	70
BpuEI	CTTGAG	3 cut(s)	391, 2452, 3445
BpuMI	CCSGG	5 cut(s)	99, 153, 593, 894, 2143
Bsa29I	ATCGAT	1 cut(s)	3359
BsaBI	GATNNNNATC	1 cut(s)	3483
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	7 cut(s)	98, 376, 1447, 1456, 2142, 2154, 2957
BsaXI	ACNNNNNCTCC	2 cut(s)	1169, 1199
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 1884, 2669, 3325, 3329
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	6 cut(s)	245, 403, 1168, 1468, 1990, 2990
Bse21I	CCTNAGG	1 cut(s)	3324
Bse3DI	GCAATG	8 cut(s)	21, 665, 1115, 2094, 2196, 2935, 3163, 3395
Bse8I	GATNNNNATC	1 cut(s)	3483
BseBI	CCWGG	4 cut(s)	388, 1448, 1879, 2958
BseCI	ATCGAT	1 cut(s)	3359
BseDI	CCNNGG	7 cut(s)	98, 376, 1447, 1456, 2142, 2154, 2957
BseJI	GATNNNNATC	1 cut(s)	3483
BseLI	CCNNNNNNNGG	5 cut(s)	97, 1884, 2669, 3325, 3329
BseMI	GCAATG	8 cut(s)	21, 665, 1115, 2094, 2196, 2935, 3163, 3395
BseMII	CTCAG	9 cut(s)	606, 624, 632, 1277, 2183, 2430, 2935, 3338, 3398
BseNI	ACTGG	6 cut(s)	245, 403, 1168, 1468, 1990, 2990
BseRI	GAGGAG	5 cut(s)	299, 308, 311, 1158, 1183
BseSI	GKGCMC	2 cut(s)	1556, 2740
BseYI	CCCAGC	1 cut(s)	2002
Bsh1236I	CGCG	3 cut(s)	84, 93, 3228
Bsh1285I	CGRYCG	1 cut(s)	422
BshFI	GGCC	9 cut(s)	77, 591, 697, 704, 1377, 1877, 2123, 2177, 2654
BshNI	GGYRCC	4 cut(s)	148, 1601, 1632, 3272
BshVI	ATCGAT	1 cut(s)	3359
BsiEI	CGRYCG	1 cut(s)	422
BsiHKAI	GWGCWC	4 cut(s)	60, 1556, 2251, 2554
BsiHKCI	CYCGRG	1 cut(s)	3496
BsiSI	CCGG	8 cut(s)	98, 152, 418, 436, 592, 701, 894, 2142
BslFI	GGGAC	4 cut(s)	115, 1464, 3124, 3478
BslI	CCNNNNNNNGG	5 cut(s)	97, 1884, 2669, 3325, 3329
BsmAI	GTCTC	2 cut(s)	2172, 3236
BsmFI	GGGAC	4 cut(s)	115, 1464, 3124, 3478
BsmI	GAATGC	2 cut(s)	350, 1954
BsnI	GGCC	9 cut(s)	77, 591, 697, 704, 1377, 1877, 2123, 2177, 2654
BsoBI	CYCGRG	1 cut(s)	3496
Bsp119I	TTCGAA	1 cut(s)	70
Bsp1286I	GDGCHC	6 cut(s)	60, 251, 1556, 2251, 2554, 2740
Bsp1407I	TGTACA	2 cut(s)	234, 2542
Bsp19I	CCATGG	1 cut(s)	2154
Bsp68I	TCGCGA	1 cut(s)	3228
BspANI	GGCC	9 cut(s)	77, 591, 697, 704, 1377, 1877, 2123, 2177, 2654
BspCNI	CTCAG	9 cut(s)	607, 625, 633, 1278, 2182, 2431, 2934, 3337, 3397
BspDI	ATCGAT	1 cut(s)	3359
BspFNI	CGCG	3 cut(s)	84, 93, 3228
BspMAI	CTGCAG	2 cut(s)	1547, 2107
BspPI	GGATC	7 cut(s)	23, 89, 645, 832, 1590, 2144, 3190
BspQI	GCTCTTC	1 cut(s)	256
BspT104I	TTCGAA	1 cut(s)	70
BspT107I	GGYRCC	4 cut(s)	148, 1601, 1632, 3272
BspTI	CTTAAG	1 cut(s)	577
BsrBI	CCGCTC	3 cut(s)	158, 466, 3186
BsrDI	GCAATG	8 cut(s)	21, 665, 1115, 2094, 2196, 2935, 3163, 3395
BsrFI	RCCGGY	1 cut(s)	417
BsrGI	TGTACA	2 cut(s)	234, 2542
BsrI	ACTGG	6 cut(s)	245, 403, 1168, 1468, 1990, 2990
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	7 cut(s)	98, 376, 1447, 1456, 2142, 2154, 2957
BssNI	GRCGYC	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	2154
Bst2UI	CCWGG	4 cut(s)	388, 1448, 1879, 2958
Bst4CI	ACNGT	5 cut(s)	820, 2113, 2213, 2742, 3437
Bst6I	CTCTTC	6 cut(s)	256, 276, 751, 1296, 1850, 1896
BstACI	GRCGYC	1 cut(s)	149
BstAFI	CTTAAG	1 cut(s)	577
BstAPI	GCANNNNNTGC	1 cut(s)	1551
BstAUI	TGTACA	2 cut(s)	234, 2542
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	82, 2179, 3018
BstDSI	CCRYGG	3 cut(s)	376, 1456, 2154
BstENI	CCTNNNNNAGG	1 cut(s)	3323
BstFNI	CGCG	3 cut(s)	84, 93, 3228
BstH2I	RGCGCY	3 cut(s)	121, 152, 2344
BstHHI	GCGC	5 cut(s)	120, 151, 441, 1102, 2343
BstMAI	GTCTC	2 cut(s)	2172, 3236
BstMCI	CGRYCG	1 cut(s)	422
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 155, 676, 1551, 1949, 2843
BstNI	CCWGG	4 cut(s)	388, 1448, 1879, 2958
BstNSI	RCATGY	3 cut(s)	958, 2291, 2537
BstPAI	GACNNNNGTC	2 cut(s)	1054, 2400
BstSCI	CCNGG	9 cut(s)	97, 151, 386, 591, 892, 1446, 1877, 2141, 2956
BstSFI	CTRYAG	5 cut(s)	757, 1476, 1543, 2103, 3254
BstSLI	GKGCMC	2 cut(s)	1556, 2740
BstUI	CGCG	3 cut(s)	84, 93, 3228
BstV2I	GAAGAC	2 cut(s)	1053, 1768
BstX2I	RGATCY	6 cut(s)	140, 637, 824, 1582, 2071, 3195
BstYI	RGATCY	6 cut(s)	140, 637, 824, 1582, 2071, 3195
Bsu15I	ATCGAT	1 cut(s)	3359
Bsu36I	CCTNAGG	1 cut(s)	3324
BsuRI	GGCC	9 cut(s)	77, 591, 697, 704, 1377, 1877, 2123, 2177, 2654
BsuTUI	ATCGAT	1 cut(s)	3359
BtgI	CCRYGG	3 cut(s)	376, 1456, 2154
BtsI	GCAGTG	1 cut(s)	2100
BtsIMutI	CAGTG	9 cut(s)	361, 396, 612, 1554, 2100, 2118, 2388, 2747, 3442
BtuMI	TCGCGA	1 cut(s)	3228
Cac8I	GCNNGC	3 cut(s)	82, 2179, 3018
CfoI	GCGC	5 cut(s)	120, 151, 441, 1102, 2343
Cfr10I	RCCGGY	1 cut(s)	417
ClaI	ATCGAT	1 cut(s)	3359
CseI	GACGC	2 cut(s)	335, 2934
Csp6I	GTAC	8 cut(s)	235, 816, 1345, 1602, 1633, 1815, 2214, 2543
CspCI	CAANNNNNGTGG	4 cut(s)	889, 924, 1177, 1212
CviQI	GTAC	8 cut(s)	235, 816, 1345, 1602, 1633, 1815, 2214, 2543
DinI	GGCGCC	1 cut(s)	150
DrdI	GACNNNNNNGTC	1 cut(s)	3118
DriI	GACNNNNNGTC	1 cut(s)	2930
DseDI	GACNNNNNNGTC	1 cut(s)	3118
EaeI	YGGCCR	3 cut(s)	1375, 1875, 2175
Eam1104I	CTCTTC	6 cut(s)	256, 276, 751, 1296, 1850, 1896
Eam1105I	GACNNNNNGTC	1 cut(s)	2930
EarI	CTCTTC	6 cut(s)	256, 276, 751, 1296, 1850, 1896
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	2154
Eco24I	GRGCYC	2 cut(s)	60, 251
Eco32I	GATATC	1 cut(s)	446
Eco47I	GGWCC	9 cut(s)	102, 877, 927, 1451, 1987, 2981, 3111, 3316, 3457
Eco47III	AGCGCT	1 cut(s)	2342
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	4 cut(s)	1047, 2315, 2835, 2841
Eco81I	CCTNAGG	1 cut(s)	3324
Eco88I	CYCGRG	1 cut(s)	3496
EcoICRI	GAGCTC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	3323
EcoO109I	RGGNCCY	4 cut(s)	1451, 2652, 3111, 3316
EcoRI	GAATTC	1 cut(s)	3364
EcoRII	CCWGG	4 cut(s)	386, 1446, 1877, 2956
EcoRV	GATATC	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	2154
EcoT22I	ATGCAT	1 cut(s)	1930
EcoT38I	GRGCYC	2 cut(s)	60, 251
EgeI	GGCGCC	1 cut(s)	150
EheI	GGCGCC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	2154
FaqI	GGGAC	4 cut(s)	115, 1464, 3124, 3478
FauI	CCCGC	3 cut(s)	89, 154, 2194
FbaI	TGATCA	2 cut(s)	2632, 3478
FblI	GTMKAC	2 cut(s)	776, 1475
FriOI	GRGCYC	2 cut(s)	60, 251
FspBI	CTAG	9 cut(s)	780, 1044, 1092, 1482, 1511, 1910, 2069, 2801, 2871
FspI	TGCGCA	1 cut(s)	1101
GlaI	GCGC	5 cut(s)	119, 150, 440, 1101, 2342
GsaI	CCCAGC	1 cut(s)	2006
GsuI	CTGGAG	3 cut(s)	121, 1299, 2376
HaeII	RGCGCY	3 cut(s)	121, 152, 2344
HaeIII	GGCC	9 cut(s)	77, 591, 697, 704, 1377, 1877, 2123, 2177, 2654
HapII	CCGG	8 cut(s)	98, 152, 418, 436, 592, 701, 894, 2142
HgaI	GACGC	2 cut(s)	335, 2934
HhaI	GCGC	5 cut(s)	120, 151, 441, 1102, 2343
Hin1I	GRCGYC	1 cut(s)	149
Hin6I	GCGC	5 cut(s)	118, 149, 439, 1100, 2341
HinP1I	GCGC	5 cut(s)	118, 149, 439, 1100, 2341
HincII	GTYRAC	2 cut(s)	777, 3123
HindII	GTYRAC	2 cut(s)	777, 3123
HindIII	AAGCTT	2 cut(s)	677, 1215
HpaII	CCGG	8 cut(s)	98, 152, 418, 436, 592, 701, 894, 2142
HphI	GGTGA	4 cut(s)	52, 1145, 1700, 3527
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	9 cut(s)	180, 238, 987, 1259, 1728, 2397, 2816, 2999, 3436
HpyCH4III	ACNGT	5 cut(s)	820, 2113, 2213, 2742, 3437
HpyCH4IV	ACGT	1 cut(s)	1472
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 155, 676, 1551, 1949, 2843
HpySE526I	ACGT	1 cut(s)	1472
Hsp92I	GRCGYC	1 cut(s)	149
HspAI	GCGC	5 cut(s)	118, 149, 439, 1100, 2341
KasI	GGCGCC	1 cut(s)	148
KflI	GGGWCCC	2 cut(s)	1451, 3111
KpnI	GGTACC	2 cut(s)	1605, 1636
Ksp22I	TGATCA	2 cut(s)	2632, 3478
LguI	GCTCTTC	1 cut(s)	256
LmnI	GCTCC	6 cut(s)	155, 438, 977, 1435, 1519, 1663
LweI	GCATC	5 cut(s)	420, 1097, 1679, 1915, 1960
MaeI	CTAG	9 cut(s)	780, 1044, 1092, 1482, 1511, 1910, 2069, 2801, 2871
MaeII	ACGT	1 cut(s)	1472
MaeIII	GTNAC	5 cut(s)	392, 1706, 2064, 2402, 2504
MbiI	CCGCTC	3 cut(s)	158, 466, 3186
MfeI	CAATTG	1 cut(s)	3088
MflI	RGATCY	6 cut(s)	140, 637, 824, 1582, 2071, 3195
MhlI	GDGCHC	6 cut(s)	60, 251, 1556, 2251, 2554, 2740
MlsI	TGGCCA	3 cut(s)	1377, 1877, 2177
MluNI	TGGCCA	3 cut(s)	1377, 1877, 2177
Mly113I	GGCGCC	1 cut(s)	149
MlyI	GAGTC	4 cut(s)	737, 2132, 2228, 2356
MmeI	TCCRAC	3 cut(s)	802, 1965, 2592
Mox20I	TGGCCA	3 cut(s)	1377, 1877, 2177
Mph1103I	ATGCAT	1 cut(s)	1930
MroXI	GAANNNNTTC	2 cut(s)	2826, 2916
MscI	TGGCCA	3 cut(s)	1377, 1877, 2177
MseI	TTAA	8 cut(s)	578, 1074, 1743, 1857, 2183, 2282, 2723, 3404
MslI	CAYNNNNRTG	2 cut(s)	528, 2790
Msp20I	TGGCCA	3 cut(s)	1377, 1877, 2177
MspCI	CTTAAG	1 cut(s)	577
MspI	CCGG	8 cut(s)	98, 152, 418, 436, 592, 701, 894, 2142
MspR9I	CCNGG	9 cut(s)	99, 153, 388, 593, 894, 1448, 1879, 2143, 2958
MunI	CAATTG	1 cut(s)	3088
Mva1269I	GAATGC	2 cut(s)	350, 1954
MvaI	CCWGG	4 cut(s)	388, 1448, 1879, 2958
MvnI	CGCG	3 cut(s)	84, 93, 3228
MwoI	GCNNNNNNNGC	6 cut(s)	90, 155, 676, 1551, 1949, 2843
NarI	GGCGCC	1 cut(s)	149
NciI	CCSGG	5 cut(s)	99, 153, 593, 894, 2143
NcoI	CCATGG	1 cut(s)	2154
NmuCI	GTSAC	4 cut(s)	392, 1706, 2402, 2504
NruI	TCGCGA	1 cut(s)	3228
NsbI	TGCGCA	1 cut(s)	1101
NsiI	ATGCAT	1 cut(s)	1930
NspI	RCATGY	3 cut(s)	958, 2291, 2537
NspV	TTCGAA	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	256
PctI	GAATGC	2 cut(s)	350, 1954
PdmI	GAANNNNTTC	2 cut(s)	2826, 2916
PfoI	TCCNGGA	1 cut(s)	386
PleI	GAGTC	4 cut(s)	737, 2132, 2228, 2356
PluTI	GGCGCC	1 cut(s)	152
PpsI	GAGTC	4 cut(s)	737, 2132, 2228, 2356
PpuMI	RGGWCCY	3 cut(s)	1451, 3111, 3316
PshAI	GACNNNNGTC	2 cut(s)	1054, 2400
PsiI	TTATAA	2 cut(s)	789, 1403
Psp124BI	GAGCTC	1 cut(s)	60
Psp5II	RGGWCCY	3 cut(s)	1451, 3111, 3316
Psp6I	CCWGG	4 cut(s)	386, 1446, 1877, 2956
PspFI	CCCAGC	1 cut(s)	2002
PspGI	CCWGG	4 cut(s)	386, 1446, 1877, 2956
PspPPI	RGGWCCY	3 cut(s)	1451, 3111, 3316
PsrI	GAACNNNNNNTAC	2 cut(s)	2197, 2229
PstI	CTGCAG	2 cut(s)	1547, 2107
PsuI	RGATCY	6 cut(s)	140, 637, 824, 1582, 2071, 3195
RruI	TCGCGA	1 cut(s)	3228
RsaI	GTAC	8 cut(s)	236, 817, 1346, 1603, 1634, 1816, 2215, 2544
RsaNI	GTAC	8 cut(s)	235, 816, 1345, 1602, 1633, 1815, 2214, 2543
RseI	CAYNNNNRTG	2 cut(s)	528, 2790
SacI	GAGCTC	1 cut(s)	60
SalI	GTCGAC	1 cut(s)	775
SapI	GCTCTTC	1 cut(s)	256
SaqAI	TTAA	8 cut(s)	578, 1074, 1743, 1857, 2183, 2282, 2723, 3404
ScaI	AGTACT	1 cut(s)	817
SchI	GAGTC	4 cut(s)	737, 2132, 2228, 2356
ScrFI	CCNGG	9 cut(s)	99, 153, 388, 593, 894, 1448, 1879, 2143, 2958
SduI	GDGCHC	6 cut(s)	60, 251, 1556, 2251, 2554, 2740
SfaNI	GCATC	5 cut(s)	420, 1097, 1679, 1915, 1960
SfcI	CTRYAG	5 cut(s)	757, 1476, 1543, 2103, 3254
SfoI	GGCGCC	1 cut(s)	150
SfuI	TTCGAA	1 cut(s)	70
SinI	GGWCC	9 cut(s)	102, 877, 927, 1451, 1987, 2981, 3111, 3316, 3457
SmiMI	CAYNNNNRTG	2 cut(s)	528, 2790
SmlI	CTYRAG	4 cut(s)	370, 577, 2467, 3424
SmoI	CTYRAG	4 cut(s)	370, 577, 2467, 3424
SpeI	ACTAGT	1 cut(s)	779
SspDI	GGCGCC	1 cut(s)	148
SspI	AATATT	2 cut(s)	1384, 1748
SspMI	CTAG	9 cut(s)	780, 1044, 1092, 1482, 1511, 1910, 2069, 2801, 2871
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	9 cut(s)	97, 151, 386, 591, 892, 1446, 1877, 2141, 2956
StyI	CCWWGG	1 cut(s)	2154
TaaI	ACNGT	5 cut(s)	820, 2113, 2213, 2742, 3437
TaiI	ACGT	1 cut(s)	1475
TaqI	TCGA	8 cut(s)	70, 263, 516, 776, 1966, 2934, 3003, 3359
TaqII	GACCGA	1 cut(s)	2276
TatI	WGTACW	4 cut(s)	234, 815, 1344, 2542
TauI	GCSGC	7 cut(s)	80, 149, 161, 210, 213, 350, 466
Tru1I	TTAA	8 cut(s)	578, 1074, 1743, 1857, 2183, 2282, 2723, 3404
Tru9I	TTAA	8 cut(s)	578, 1074, 1743, 1857, 2183, 2282, 2723, 3404
TscAI	CASTG	9 cut(s)	361, 403, 619, 1561, 2107, 2118, 2388, 2747, 3442
TseFI	GTSAC	4 cut(s)	392, 1706, 2402, 2504
Tsp45I	GTSAC	4 cut(s)	392, 1706, 2402, 2504
TspGWI	ACGGA	2 cut(s)	393, 1252
TspRI	CASTG	9 cut(s)	361, 403, 619, 1561, 2107, 2118, 2388, 2747, 3442
Vha464I	CTTAAG	1 cut(s)	577
VneI	GTGCAC	1 cut(s)	1552
VpaK11BI	GGWCC	9 cut(s)	102, 877, 927, 1451, 1987, 2981, 3111, 3316, 3457
XagI	CCTNNNNNAGG	1 cut(s)	3323
XapI	RAATTY	4 cut(s)	1485, 2013, 2902, 3364
XbaI	TCTAGA	2 cut(s)	1091, 2870
XceI	RCATGY	3 cut(s)	958, 2291, 2537
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1454, 2131, 2185
XmiI	GTMKAC	2 cut(s)	776, 1475
XmnI	GAANNNNTTC	2 cut(s)	2826, 2916
XspI	CTAG	9 cut(s)	780, 1044, 1092, 1482, 1511, 1910, 2069, 2801, 2871
ZrmI	AGTACT	1 cut(s)	817
Zsp2I	ATGCAT	1 cut(s)	1930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.