Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Forward (+)

38747251 .. 38749456

Gene Structure 2206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCTGGTAAGAACAAGGATCTATTGGAAGTTGATGGTACCAATAAGAAAGGAATTGATAAAGTCAGGTACCTATTGAAAACTCTATCTGTGGCTCCCTCATCAGCATCATCAAGGTATAAGGTTTTTGTGATTGATGAGTGTCACCTATTGCCTTCTAAGACATGGTTGGCATTTCTTAAATATTTGGAAGAACCACCGCAGCGAGTTGTCTTCATATTCATTACAACTGATTTGGATAATGTTCCTCATACTATACAATCTCGGTGTCAGAAAAATCTCTTCAACAAAATTAAGGATAGTGAGATTGTGGCCAGGTTGAGGAAAATTGCTGTTGAAGAGAACCTAGATGTTGAACCAGATGCATTAGATTTGATTGCTTTGAATGCAGATGGTTCACTTCGAGATGCAGAAACTATGTTGGACCAGTTGAGTTTGCTGGGGAAAAGAATTTCAACATCTCTTGTGAATGAACTTGTGGGAGTTGTTTCCGATGACAAGTTACAAGATCTTTTGGAGTTAGCAATGTCATCGGACACTGCAGAAACAGTAAAAAGGGCCAGATATTTGATGGACTCCGGGGTTGATCCCATGGTTTTGATGTCTCAGTTGGCCAGCTTAATTATGGACATCATTGCGGTAACCAACAGTACCAATGATGTCAAACATGACTCCTTATATGGTGCTCGGAACTTGACCGAAGCAGAATTGGAGAGATTAAAACATGCTCTGAAGAATCTTTCGGAGGCTGAAAAACAGCTCAGGGTTTCAAGTGAGCGCTCAACATGGTTCACAGTGACTCTGTTGCAGCTTGGTTCAGTGCCTTCTCCAGACCATATTCACTCATGCAGCAGGAGGCATAGCTGCAAGACAACTGAGGATGATTCTTCAAGTGCTTCAACTTCAAGAGGAGCTGCCACTTACAAACAGAAGTTAGATGGTCACTATATGCTACAAAAATCAACTCAACATGCTTCTGTACAAAGAGCACCAAATGACAATTCCAACCATCAGGGAGATTCGTTGTCAAGAAATAATGGTTTCGGTGTGAATACCAAGCCCTCACATGATCAGTTCGTGGATAGTGGTGCCTTGACGGGAGTTATTATGGCTGGAAATATGAGCCTTAGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

378

Amino Acids

41.83

Weight (kDa)

6.27

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	4 - 97	2.7e-16	DNA polymerase III, delta subunit
DNAX_ATPase_lid	PF22608	102 - 143	2.3e-10	DNA polymerase III clamp loader subunit, ATPase lid domain
DNA_pol3_gamma3	PF12169	152 - 273	9.7e-09	DNA polymerase III subunits gamma and tau domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	38, 69
AccB1I	GGYRCC	3 cut(s)	38, 69, 1088
AciI	CCGC	2 cut(s)	200, 638
AclWI	GGATC	2 cut(s)	27, 581
AcoI	YGGCCR	2 cut(s)	312, 612
AcsI	RAATTY	1 cut(s)	450
AcuI	CTGAAG	1 cut(s)	752
AfaI	GTAC	4 cut(s)	40, 71, 652, 981
AfeI	AGCGCT	1 cut(s)	779
AfiI	CCNNNNNNNGG	1 cut(s)	321
AjnI	CCWGG	1 cut(s)	314
AjuI	GAANNNNNNNTTGG	2 cut(s)	985, 1017
AluBI	AGCT	5 cut(s)	618, 760, 811, 864, 914
AluI	AGCT	5 cut(s)	618, 760, 811, 864, 914
Alw21I	GWGCWC	2 cut(s)	688, 991
Alw26I	GTCTC	1 cut(s)	609
AlwI	GGATC	2 cut(s)	27, 581
Aor51HI	AGCGCT	1 cut(s)	779
AoxI	GGCC	3 cut(s)	312, 558, 612
ApeKI	GCWGC	5 cut(s)	202, 808, 849, 864, 914
ApoI	RAATTY	1 cut(s)	450
Asp718I	GGTACC	2 cut(s)	38, 69
AspLEI	GCGC	1 cut(s)	780
AspS9I	GGNCC	2 cut(s)	424, 558
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	424
BalI	TGGCCA	2 cut(s)	314, 614
BanI	GGYRCC	3 cut(s)	38, 69, 1088
BbsI	GAAGAC	1 cut(s)	205
Bbv12I	GWGCWC	2 cut(s)	688, 991
BbvI	GCAGC	5 cut(s)	214, 820, 851, 861, 901
BccI	CCATC	5 cut(s)	29, 386, 565, 932, 1017
BcgI	CGANNNNNNTGC	2 cut(s)	513, 547
BciT130I	CCWGG	1 cut(s)	316
BclI	TGATCA	1 cut(s)	1069
BcnI	CCSGG	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	609
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	540
BfoI	RGCGCY	1 cut(s)	781
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	5 cut(s)	203, 809, 850, 865, 915
BlsI	GCNGC	5 cut(s)	204, 810, 851, 866, 916
Bme1390I	CCNGG	2 cut(s)	316, 580
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	2 cut(s)	424, 558
BmiI	GGNNCC	4 cut(s)	40, 71, 96, 1090
BmrFI	CCNGG	2 cut(s)	316, 580
BmsI	GCATC	3 cut(s)	116, 352, 397
BpiI	GAAGAC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	813
Bpu10I	CCTNAGC	1 cut(s)	761
BpuMI	CCSGG	1 cut(s)	580
BsaJI	CCNNGG	2 cut(s)	579, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	2 cut(s)	531, 633
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	579, 591
BseGI	GGATG	1 cut(s)	886
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMI	GCAATG	2 cut(s)	531, 633
BseMII	CTCAG	3 cut(s)	620, 775, 867
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	1 cut(s)	924
BseXI	GCAGC	5 cut(s)	214, 820, 851, 861, 901
BseYI	CCCAGC	1 cut(s)	439
BshFI	GGCC	3 cut(s)	314, 560, 614
BshNI	GGYRCC	3 cut(s)	38, 69, 1088
BsiHKAI	GWGCWC	2 cut(s)	688, 991
BsiSI	CCGG	1 cut(s)	579
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	609
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	3 cut(s)	314, 560, 614
Bsp1286I	GDGCHC	2 cut(s)	688, 991
Bsp1407I	TGTACA	1 cut(s)	979
Bsp143I	GATC	4 cut(s)	19, 508, 586, 1069
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	2 cut(s)	200, 638
BspANI	GGCC	3 cut(s)	314, 560, 614
BspCNI	CTCAG	3 cut(s)	619, 774, 868
BspLI	GGNNCC	4 cut(s)	40, 71, 96, 1090
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	2 cut(s)	27, 581
BspT107I	GGYRCC	3 cut(s)	38, 69, 1088
BsrDI	GCAATG	2 cut(s)	531, 633
BsrGI	TGTACA	1 cut(s)	979
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	579, 591
BssMI	GATC	4 cut(s)	19, 508, 586, 1069
BssT1I	CCWWGG	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	3 cut(s)	550, 650, 796
Bst6I	CTCTTC	2 cut(s)	287, 333
BstAUI	TGTACA	1 cut(s)	979
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	5 cut(s)	159, 606, 761, 876, 1127
BstDSI	CCRYGG	1 cut(s)	591
BstEII	GGTNACC	1 cut(s)	640
BstF5I	GGATG	1 cut(s)	886
BstH2I	RGCGCY	1 cut(s)	781
BstHHI	GCGC	1 cut(s)	780
BstKTI	GATC	4 cut(s)	22, 511, 589, 1072
BstMAI	GTCTC	1 cut(s)	609
BstMBI	GATC	4 cut(s)	19, 508, 586, 1069
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	316
BstNSI	RCATGY	2 cut(s)	728, 974
BstPI	GGTNACC	1 cut(s)	640
BstSCI	CCNGG	2 cut(s)	314, 578
BstSFI	CTRYAG	1 cut(s)	540
BstV1I	GCAGC	5 cut(s)	214, 820, 851, 861, 901
BstV2I	GAAGAC	1 cut(s)	205
BstX2I	RGATCY	2 cut(s)	19, 508
BstYI	RGATCY	2 cut(s)	19, 508
BsuRI	GGCC	3 cut(s)	314, 560, 614
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	1 cut(s)	886
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	3 cut(s)	537, 801, 825
Cac8I	GCNNGC	1 cut(s)	616
CfoI	GCGC	1 cut(s)	780
Cfr13I	GGNCC	2 cut(s)	424, 558
Csp6I	GTAC	4 cut(s)	39, 70, 651, 980
CviAII	CATG	8 cut(s)	165, 592, 668, 725, 786, 846, 971, 1067
CviQI	GTAC	4 cut(s)	39, 70, 651, 980
DdeI	CTNAG	5 cut(s)	159, 606, 761, 876, 1127
DpnI	GATC	4 cut(s)	21, 510, 588, 1071
DpnII	GATC	4 cut(s)	19, 508, 586, 1069
EaeI	YGGCCR	2 cut(s)	312, 612
Eam1104I	CTCTTC	2 cut(s)	287, 333
EarI	CTCTTC	2 cut(s)	287, 333
Eco130I	CCWWGG	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	424
Eco47III	AGCGCT	1 cut(s)	779
Eco57I	CTGAAG	1 cut(s)	752
Eco91I	GGTNACC	1 cut(s)	640
EcoO65I	GGTNACC	1 cut(s)	640
EcoRII	CCWGG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	591
EcoT22I	ATGCAT	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	8 cut(s)	168, 595, 671, 728, 789, 849, 974, 1070
FatI	CATG	8 cut(s)	164, 591, 667, 724, 785, 845, 970, 1066
FbaI	TGATCA	1 cut(s)	1069
Fnu4HI	GCNGC	5 cut(s)	203, 809, 850, 865, 915
FokI	GGATG	1 cut(s)	893
Fsp4HI	GCNGC	5 cut(s)	203, 809, 850, 865, 915
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	779
GluI	GCNGC	5 cut(s)	203, 809, 850, 865, 915
GsaI	CCCAGC	1 cut(s)	443
GsuI	CTGGAG	1 cut(s)	813
HaeII	RGCGCY	1 cut(s)	781
HaeIII	GGCC	3 cut(s)	314, 560, 614
HapII	CCGG	1 cut(s)	579
HhaI	GCGC	1 cut(s)	780
Hin1II	CATG	8 cut(s)	168, 595, 671, 728, 789, 849, 974, 1070
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HinfI	GANTC	6 cut(s)	575, 671, 736, 799, 884, 1019
HpaII	CCGG	1 cut(s)	579
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	2 cut(s)	398, 792
Hpy188I	TCNGA	6 cut(s)	273, 493, 535, 690, 732, 745
Hpy188III	TCNNGA	4 cut(s)	404, 830, 906, 1029
Hpy8I	GTNNAC	2 cut(s)	398, 792
HpyAV	CCTTC	2 cut(s)	165, 834
HpyCH4III	ACNGT	3 cut(s)	550, 650, 796
HpyCH4V	TGCA	7 cut(s)	365, 389, 410, 542, 808, 849, 867
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	5 cut(s)	159, 606, 761, 876, 1127
Hsp92II	CATG	8 cut(s)	168, 595, 671, 728, 789, 849, 974, 1070
HspAI	GCGC	1 cut(s)	778
KpnI	GGTACC	2 cut(s)	42, 73
Ksp22I	TGATCA	1 cut(s)	1069
Kzo9I	GATC	4 cut(s)	19, 508, 586, 1069
LmnI	GCTCC	2 cut(s)	100, 911
Lsp1109I	GCAGC	5 cut(s)	214, 820, 851, 861, 901
LweI	GCATC	3 cut(s)	116, 352, 397
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	5 cut(s)	143, 501, 640, 796, 941
MalI	GATC	4 cut(s)	21, 510, 588, 1071
MboI	GATC	4 cut(s)	19, 508, 586, 1069
MboII	GAAGA	6 cut(s)	203, 205, 274, 350, 745, 879
MflI	RGATCY	2 cut(s)	19, 508
MhlI	GDGCHC	2 cut(s)	688, 991
MlsI	TGGCCA	2 cut(s)	314, 614
MluCI	AATT	7 cut(s)	54, 291, 327, 450, 621, 707, 1000
MluNI	TGGCCA	2 cut(s)	314, 614
MlyI	GAGTC	3 cut(s)	569, 665, 793
MmeI	TCCRAC	2 cut(s)	402, 1029
MnlI	CCTC	8 cut(s)	109, 258, 315, 739, 849, 871, 902, 1072
Mox20I	TGGCCA	2 cut(s)	314, 614
Mph1103I	ATGCAT	1 cut(s)	367
MscI	TGGCCA	2 cut(s)	314, 614
MseI	TTAA	4 cut(s)	180, 294, 620, 719
Msp20I	TGGCCA	2 cut(s)	314, 614
MspI	CCGG	1 cut(s)	579
MspR9I	CCNGG	2 cut(s)	316, 580
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	580
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	4 cut(s)	19, 508, 586, 1069
NlaIII	CATG	8 cut(s)	168, 595, 671, 728, 789, 849, 974, 1070
NlaIV	GGNNCC	4 cut(s)	40, 71, 96, 1090
NmuCI	GTSAC	3 cut(s)	143, 796, 941
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	2 cut(s)	728, 974
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	3 cut(s)	736, 884, 1019
PkrI	GCNGC	5 cut(s)	204, 810, 851, 866, 916
PleI	GAGTC	3 cut(s)	569, 665, 793
PpsI	GAGTC	3 cut(s)	569, 665, 793
Psp6I	CCWGG	1 cut(s)	314
PspEI	GGTNACC	1 cut(s)	640
PspFI	CCCAGC	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	4 cut(s)	40, 71, 96, 1090
PspPI	GGNCC	2 cut(s)	424, 558
PstI	CTGCAG	1 cut(s)	544
PsuI	RGATCY	2 cut(s)	19, 508
RsaI	GTAC	4 cut(s)	40, 71, 652, 981
RsaNI	GTAC	4 cut(s)	39, 70, 651, 980
SaqAI	TTAA	4 cut(s)	180, 294, 620, 719
SatI	GCNGC	5 cut(s)	203, 809, 850, 865, 915
Sau3AI	GATC	4 cut(s)	19, 508, 586, 1069
Sau96I	GGNCC	2 cut(s)	424, 558
SchI	GAGTC	3 cut(s)	569, 665, 793
ScrFI	CCNGG	2 cut(s)	316, 580
SduI	GDGCHC	2 cut(s)	688, 991
SfaNI	GCATC	3 cut(s)	116, 352, 397
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	424
Sse9I	AATT	7 cut(s)	54, 291, 327, 450, 621, 707, 1000
SsiI	CCGC	2 cut(s)	200, 638
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	314, 578
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	550, 650, 796
TaqI	TCGA	1 cut(s)	403
TaqII	GACCGA	1 cut(s)	713
TasI	AATT	7 cut(s)	54, 291, 327, 450, 621, 707, 1000
TatI	WGTACW	1 cut(s)	979
TfiI	GAWTC	3 cut(s)	736, 884, 1019
Tru1I	TTAA	4 cut(s)	180, 294, 620, 719
Tru9I	TTAA	4 cut(s)	180, 294, 620, 719
TscAI	CASTG	3 cut(s)	544, 801, 825
TseFI	GTSAC	3 cut(s)	143, 796, 941
TseI	GCWGC	5 cut(s)	202, 808, 849, 864, 914
Tsp45I	GTSAC	3 cut(s)	143, 796, 941
TspDTI	ATGAA	3 cut(s)	205, 211, 486
TspRI	CASTG	3 cut(s)	544, 801, 825
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	1 cut(s)	450
XceI	RCATGY	2 cut(s)	728, 974
XcmI	CCANNNNNNNNNTGG	2 cut(s)	568, 622
XspI	CTAG	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.