Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003823.1

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Forward (+)

8732 .. 11099

Gene Structure 2368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003823.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atggaaatagttctcagacgcaatgtcgaggttagaattgttcacttgccaggtggggaggcttctctaaatggtccaagtccagttcacttgctcgaaggtctaaagcaggcaggaactatggcagaacttgtcagggaaaggaaaagagttggttcaaatgccacagatggttattccaattgttctctgtttctggatgggacccacaagtcaacctctgattcatcagacttagttgcagatggcaatgctcaaacaagtgatacaaaagagagcggacaggagattccaatgcagagaatagaatccattattcgcgaccaaaggttagagactgcgtggctacaggttgcagagaaaggcacccctggttctttgagtcgtttgaaacctgaaaagaatcaggtcctgcctcaggatggcatttattacgaagatcagatggaatcgatgaattcaatgggattatcctctcagcaatgggatgatggattaaaccatgaagtaaaaatcttgagtgctaacagtgggaaggtcattcagcaggaccaaataggtaaaagggttgatcattatcctatgtccccgagtttactacatgaaaagggcaagtccgacaaagatcacctgggcgatgaatcagggtcaggtagaggaggttgcagtggattttttcgttgttataacactagacgtcgtaaaagaggaaaggtaaaagggacccctgttcaaccacgcaaaggtagacggttttcattgtttggtgtgtgtggcaagtcaaggaagaaagcagagaagacaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

269

Amino Acids

29.78

Weight (kDa)

9.39

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	687
AasI	GACNNNNNNGTC	1 cut(s)	211
AatII	GACGTC	1 cut(s)	700
AccB1I	GGYRCC	1 cut(s)	365
AccBSI	CCGCTC	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	748
AccII	CGCG	1 cut(s)	321
AciI	CCGC	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	457
AcyI	GRCGYC	1 cut(s)	697
AfiI	CCNNNNNNNGG	3 cut(s)	418, 422, 743
AgsI	TTSAA	4 cut(s)	159, 391, 462, 734
AhdI	GACNNNNNGTC	1 cut(s)	23
AjnI	CCWGG	3 cut(s)	49, 370, 630
Alw26I	GTCTC	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	589
ApoI	RAATTY	1 cut(s)	457
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	5 cut(s)	74, 204, 409, 550, 723
AsuHPI	GGTGA	1 cut(s)	620
AvaI	CYCGRG	1 cut(s)	589
AvaII	GGWCC	5 cut(s)	74, 204, 409, 550, 723
AxyI	CCTNAGG	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	806
BccI	CCATC	6 cut(s)	164, 194, 239, 416, 439, 485
BciT130I	CCWGG	3 cut(s)	51, 372, 632
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	1 cut(s)	347
Bme1390I	CCNGG	3 cut(s)	51, 372, 632
Bme18I	GGWCC	5 cut(s)	74, 204, 409, 550, 723
BmeRI	GACNNNNNGTC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	589
BmgT120I	GGNCC	5 cut(s)	74, 204, 409, 550, 723
BmiI	GGNNCC	5 cut(s)	205, 206, 367, 724, 725
BmrFI	CCNGG	3 cut(s)	51, 372, 632
BpiI	GAAGAC	1 cut(s)	806
BpuEI	CTTGAG	1 cut(s)	538
Bsa29I	ATCGAT	1 cut(s)	452
BsaBI	GATNNNNATC	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	697
BsaJI	CCNNGG	2 cut(s)	370, 631
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 422, 743
Bse1I	ACTGG	1 cut(s)	83
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	3 cut(s)	28, 256, 488
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	3 cut(s)	51, 372, 632
BseCI	ATCGAT	1 cut(s)	452
BseDI	CCNNGG	2 cut(s)	370, 631
BseGI	GGATG	3 cut(s)	205, 427, 493
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	3 cut(s)	418, 422, 743
BseMI	GCAATG	3 cut(s)	28, 256, 488
BseMII	CTCAG	3 cut(s)	28, 431, 491
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	672
Bsh1236I	CGCG	1 cut(s)	321
BshNI	GGYRCC	1 cut(s)	365
BshVI	ATCGAT	1 cut(s)	452
BsiHKCI	CYCGRG	1 cut(s)	589
BslFI	GGGAC	3 cut(s)	217, 571, 736
BslI	CCNNNNNNNGG	3 cut(s)	418, 422, 743
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	3 cut(s)	217, 571, 736
BsoBI	CYCGRG	1 cut(s)	589
Bsp143I	GATC	3 cut(s)	439, 571, 625
Bsp68I	TCGCGA	1 cut(s)	321
BspACI	CCGC	1 cut(s)	279
BspCNI	CTCAG	3 cut(s)	27, 430, 490
BspDI	ATCGAT	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	5 cut(s)	205, 206, 367, 724, 725
BspT107I	GGYRCC	1 cut(s)	365
BsrBI	CCGCTC	1 cut(s)	279
BsrDI	GCAATG	3 cut(s)	28, 256, 488
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	370, 631
BssMI	GATC	3 cut(s)	439, 571, 625
BssNI	GRCGYC	1 cut(s)	697
Bst2UI	CCWGG	3 cut(s)	51, 372, 632
Bst4CI	ACNGT	2 cut(s)	530, 753
BstACI	GRCGYC	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	4 cut(s)	14, 235, 417, 477
BstENI	CCTNNNNNAGG	1 cut(s)	416
BstF5I	GGATG	3 cut(s)	205, 427, 493
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	3 cut(s)	442, 574, 628
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	3 cut(s)	439, 571, 625
BstNI	CCWGG	3 cut(s)	51, 372, 632
BstSCI	CCNGG	3 cut(s)	49, 370, 630
BstSFI	CTRYAG	1 cut(s)	347
BstUI	CGCG	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	806
Bsu15I	ATCGAT	1 cut(s)	452
Bsu36I	CCTNAGG	1 cut(s)	417
BsuTUI	ATCGAT	1 cut(s)	452
BtgZI	GCGATG	1 cut(s)	651
BtsCI	GGATG	3 cut(s)	205, 427, 493
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	2 cut(s)	535, 673
BtuMI	TCGCGA	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	412
Cfr13I	GGNCC	5 cut(s)	74, 204, 409, 550, 723
ClaI	ATCGAT	1 cut(s)	452
CseI	GACGC	1 cut(s)	27
CviAII	CATG	2 cut(s)	503, 602
CviJI	RGCY	2 cut(s)	62, 346
CviKI_1	RGCY	2 cut(s)	62, 346
DdeI	CTNAG	4 cut(s)	14, 235, 417, 477
DpnI	GATC	3 cut(s)	441, 573, 627
DpnII	GATC	3 cut(s)	439, 571, 625
DrdI	GACNNNNNNGTC	1 cut(s)	211
DriI	GACNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	211
Eam1105I	GACNNNNNGTC	1 cut(s)	23
Eco47I	GGWCC	5 cut(s)	74, 204, 409, 550, 723
Eco81I	CCTNAGG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	589
EcoNI	CCTNNNNNAGG	1 cut(s)	416
EcoO109I	RGGNCCY	3 cut(s)	204, 409, 723
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	3 cut(s)	49, 370, 630
FaeI	CATG	2 cut(s)	506, 605
FaiI	YATR	5 cut(s)	122, 504, 584, 603, 687
FaqI	GGGAC	3 cut(s)	217, 571, 736
FatI	CATG	2 cut(s)	502, 601
FbaI	TGATCA	1 cut(s)	571
FblI	GTMKAC	1 cut(s)	748
FokI	GGATG	3 cut(s)	212, 434, 500
FspBI	CTAG	1 cut(s)	693
HgaI	GACGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	697
Hin1II	CATG	2 cut(s)	506, 605
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	7 cut(s)	224, 289, 308, 382, 403, 449, 641
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	5 cut(s)	43, 88, 216, 596, 749
Hpy188I	TCNGA	5 cut(s)	17, 223, 232, 444, 619
Hpy188III	TCNNGA	4 cut(s)	197, 320, 419, 517
Hpy8I	GTNNAC	5 cut(s)	43, 88, 216, 596, 749
Hpy99I	CGWCG	1 cut(s)	702
HpyAV	CCTTC	2 cut(s)	92, 529
HpyCH4III	ACNGT	2 cut(s)	530, 753
HpyCH4IV	ACGT	1 cut(s)	697
HpyCH4V	TGCA	4 cut(s)	242, 298, 356, 666
HpyF3I	CTNAG	4 cut(s)	14, 235, 417, 477
HpySE526I	ACGT	1 cut(s)	697
Hsp92I	GRCGYC	1 cut(s)	697
Hsp92II	CATG	2 cut(s)	506, 605
KflI	GGGWCCC	2 cut(s)	204, 723
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	3 cut(s)	439, 571, 625
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	1 cut(s)	697
MalI	GATC	3 cut(s)	441, 573, 627
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	3 cut(s)	439, 571, 625
MboII	GAAGA	2 cut(s)	449, 799
MfeI	CAATTG	1 cut(s)	181
MluCI	AATT	3 cut(s)	36, 181, 457
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	642
MnlI	CCTC	8 cut(s)	22, 52, 229, 426, 484, 650, 653, 701
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	1 cut(s)	497
MspR9I	CCNGG	3 cut(s)	51, 372, 632
MunI	CAATTG	1 cut(s)	181
MvaI	CCWGG	3 cut(s)	51, 372, 632
MvnI	CGCG	1 cut(s)	321
NdeII	GATC	3 cut(s)	439, 571, 625
NlaIII	CATG	2 cut(s)	506, 605
NlaIV	GGNNCC	5 cut(s)	205, 206, 367, 724, 725
NruI	TCGCGA	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	6 cut(s)	224, 289, 308, 403, 449, 641
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
PpuMI	RGGWCCY	3 cut(s)	204, 409, 723
PsiI	TTATAA	1 cut(s)	687
Psp5II	RGGWCCY	3 cut(s)	204, 409, 723
Psp6I	CCWGG	3 cut(s)	49, 370, 630
PspGI	CCWGG	3 cut(s)	49, 370, 630
PspN4I	GGNNCC	5 cut(s)	205, 206, 367, 724, 725
PspPI	GGNCC	5 cut(s)	74, 204, 409, 550, 723
PspPPI	RGGWCCY	3 cut(s)	204, 409, 723
PstNI	CAGNNNCTG	1 cut(s)	412
RruI	TCGCGA	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	497
Sau3AI	GATC	3 cut(s)	439, 571, 625
Sau96I	GGNCC	5 cut(s)	74, 204, 409, 550, 723
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	3 cut(s)	51, 372, 632
SfcI	CTRYAG	1 cut(s)	347
SinI	GGWCC	5 cut(s)	74, 204, 409, 550, 723
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
Sse9I	AATT	3 cut(s)	36, 181, 457
SsiI	CCGC	1 cut(s)	279
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	3 cut(s)	49, 370, 630
TaaI	ACNGT	2 cut(s)	530, 753
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	3 cut(s)	27, 96, 452
TasI	AATT	3 cut(s)	36, 181, 457
TfiI	GAWTC	6 cut(s)	224, 289, 308, 403, 449, 641
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	2 cut(s)	535, 673
TspDTI	ATGAA	6 cut(s)	216, 470, 519, 618, 654, 747
TspRI	CASTG	2 cut(s)	535, 673
VpaK11BI	GGWCC	5 cut(s)	74, 204, 409, 550, 723
XagI	CCTNNNNNAGG	1 cut(s)	416
XapI	RAATTY	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	748
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	693
ZraI	GACGTC	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.