Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Forward (+)

14914179 .. 14916447

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0179300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGTACTCTTGCTGCTGCTTCTTTGCTTCCTTCAGAGTTTAAACCTTCACTCTCTTTATCTGACCCCAAAAGCTCTCTGTTTTACCATAGAAGAATACCGAAGAAGAGGAACCAAGCGTTAGTTCCTGTTGCAAGGATATTTGGGCCAGCCATATTTGAAGCATCAAAGCTAAAGGTTCTGTTCGTAGGAGTGGATGAAAAGAAACATCCTGGGAATCTTCCAAGGACTTACACACTTACTCATAGTGATGTAACCTCAAAGCTCACTCTGGCCATCTCACAGACTACAAACAATTCTCAGTTGCAAGGATGGTACAACAAATTACAAAGAGATGAGGTTGTGGCAGAATGGAGGAAAGTAAAGGACAAGATGTCTCTCCATGTTCATTGCCATATAAGTGGAGGTCATTTCCTTTTGGATTTGTTTTCAAGGCTGAGATACTTCATCTTCTGCAAAGAGCTTCCTGTTGTTTTGAAGGCCTTTATTCATGGAGATGGCAACCTGTTCAACAGTTACCCAGAATTGGAGGAGGCTTTGGTTTGGGTTTACTTTCACTCCAACATTCCAGAATTCAACAAGGTTGAATGTTGGGGCCCACTCAGGAATGCAACATCACCATCTGGTAGGGGACACCAGAAGGCAGCTTCCTCAAGCAACCAGGAGGACTTGGTGCCAGAACCATGCCAAGAGGACTGTAGCTGTTGCTTCCCACCACTGAGCTCCATCCCATGGCCCCAAGAGCTTCCCCAGCCAAATGAAACTGGATATGGGGCCCAGCAGAGCTTTCTGGGGCAAACTCGAGAACCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

271

Amino Acids

30.55

Weight (kDa)

8.42

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Staygreen	PF12638	53 - 204	8.9e-56	Staygreen protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	673
AccB7I	CCANNNNNTGG	1 cut(s)	732
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	572
AcuI	CTGAAG	1 cut(s)	18
AfaI	GTAC	2 cut(s)	7, 317
AfiI	CCNNNNNNNGG	2 cut(s)	526, 732
AgsI	TTSAA	6 cut(s)	161, 432, 478, 511, 577, 587
AhdI	GACNNNNNGTC	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	211, 660
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AluBI	AGCT	9 cut(s)	75, 172, 265, 463, 647, 702, 723, 745, 786
AluI	AGCT	9 cut(s)	75, 172, 265, 463, 647, 702, 723, 745, 786
Alw21I	GWGCWC	1 cut(s)	725
Alw26I	GTCTC	1 cut(s)	381
Ama87I	CYCGRG	1 cut(s)	801
AoxI	GGCC	6 cut(s)	146, 273, 480, 595, 734, 774
ApaI	GGGCCC	2 cut(s)	599, 778
ApeKI	GCWGC	3 cut(s)	14, 17, 644
ApoI	RAATTY	1 cut(s)	572
AspS9I	GGNCC	6 cut(s)	146, 595, 596, 735, 774, 775
AsuHPI	GGTGA	1 cut(s)	609
AvaI	CYCGRG	1 cut(s)	801
BaeGI	GKGCMC	2 cut(s)	599, 778
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	673
BanII	GRGCYC	3 cut(s)	599, 725, 778
Bbv12I	GWGCWC	1 cut(s)	725
BbvI	GCAGC	2 cut(s)	4, 656
BccI	CCATC	5 cut(s)	284, 306, 491, 628, 734
BciT130I	CCWGG	2 cut(s)	213, 662
BcoDI	GTCTC	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	697
BisI	GCNGC	3 cut(s)	15, 18, 645
BlsI	GCNGC	3 cut(s)	16, 19, 646
BmcAI	AGTACT	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	213, 662
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmeT110I	CYCGRG	1 cut(s)	801
BmgT120I	GGNCC	6 cut(s)	146, 595, 596, 735, 774, 775
BmiI	GGNNCC	7 cut(s)	113, 596, 597, 675, 737, 775, 776
BmrFI	CCNGG	2 cut(s)	213, 662
BmsI	GCATC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	637
BsaJI	CCNNGG	3 cut(s)	212, 224, 731
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 732
Bse1I	ACTGG	1 cut(s)	769
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	213, 662
BseDI	CCNNGG	3 cut(s)	212, 224, 731
BseGI	GGATG	4 cut(s)	202, 208, 317, 726
BseLI	CCNNNNNNNGG	2 cut(s)	526, 732
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	4 cut(s)	314, 428, 616, 710
BseNI	ACTGG	1 cut(s)	769
BseRI	GAGGAG	1 cut(s)	545
BseSI	GKGCMC	2 cut(s)	599, 778
BseXI	GCAGC	2 cut(s)	4, 656
BseYI	CCCAGC	2 cut(s)	750, 777
BshFI	GGCC	6 cut(s)	148, 275, 482, 597, 736, 776
BshNI	GGYRCC	1 cut(s)	673
BsiHKAI	GWGCWC	1 cut(s)	725
BsiHKCI	CYCGRG	1 cut(s)	801
BslFI	GGGAC	1 cut(s)	645
BslI	CCNNNNNNNGG	2 cut(s)	526, 732
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	645
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	6 cut(s)	148, 275, 482, 597, 736, 776
BsoBI	CYCGRG	1 cut(s)	801
Bsp120I	GGGCCC	2 cut(s)	595, 774
Bsp1286I	GDGCHC	3 cut(s)	599, 725, 778
Bsp19I	CCATGG	1 cut(s)	731
BspANI	GGCC	6 cut(s)	148, 275, 482, 597, 736, 776
BspCNI	CTCAG	4 cut(s)	313, 429, 615, 711
BspLI	GGNNCC	7 cut(s)	113, 596, 597, 675, 737, 775, 776
BspT107I	GGYRCC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	769
BssECI	CCNNGG	3 cut(s)	212, 224, 731
BssT1I	CCWWGG	2 cut(s)	224, 731
Bst2UI	CCWGG	2 cut(s)	213, 662
Bst4CI	ACNGT	2 cut(s)	515, 698
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	4 cut(s)	300, 437, 602, 719
BstDSI	CCRYGG	1 cut(s)	731
BstF5I	GGATG	4 cut(s)	202, 208, 317, 726
BstMAI	GTCTC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	2 cut(s)	742, 751
BstNI	CCWGG	2 cut(s)	213, 662
BstSCI	CCNGG	2 cut(s)	211, 660
BstSFI	CTRYAG	1 cut(s)	697
BstSLI	GKGCMC	2 cut(s)	599, 778
BstV1I	GCAGC	2 cut(s)	4, 656
BstXI	CCANNNNNNTGG	1 cut(s)	401
BsuRI	GGCC	6 cut(s)	148, 275, 482, 597, 736, 776
BtgI	CCRYGG	1 cut(s)	731
BtsCI	GGATG	4 cut(s)	202, 208, 317, 726
BtsIMutI	CAGTG	1 cut(s)	716
Cac8I	GCNNGC	1 cut(s)	150
Cfr13I	GGNCC	6 cut(s)	146, 595, 596, 735, 774, 775
Csp6I	GTAC	2 cut(s)	6, 316
CviAII	CATG	4 cut(s)	383, 491, 684, 732
CviQI	GTAC	2 cut(s)	6, 316
DdeI	CTNAG	4 cut(s)	300, 437, 602, 719
DraI	TTTAAA	1 cut(s)	43
DriI	GACNNNNNGTC	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	101
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	723
Eco130I	CCWWGG	2 cut(s)	224, 731
Eco147I	AGGCCT	1 cut(s)	482
Eco24I	GRGCYC	3 cut(s)	599, 725, 778
Eco53kI	GAGCTC	1 cut(s)	723
Eco57I	CTGAAG	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	801
EcoICRI	GAGCTC	1 cut(s)	723
EcoO109I	RGGNCCY	2 cut(s)	595, 774
EcoRI	GAATTC	1 cut(s)	572
EcoRII	CCWGG	2 cut(s)	211, 660
EcoT14I	CCWWGG	2 cut(s)	224, 731
EcoT38I	GRGCYC	3 cut(s)	599, 725, 778
ErhI	CCWWGG	2 cut(s)	224, 731
FaeI	CATG	4 cut(s)	386, 494, 687, 735
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	4 cut(s)	382, 490, 683, 731
Fnu4HI	GCNGC	3 cut(s)	15, 18, 645
FokI	GGATG	4 cut(s)	195, 209, 324, 713
FriOI	GRGCYC	3 cut(s)	599, 725, 778
Fsp4HI	GCNGC	3 cut(s)	15, 18, 645
GluI	GCNGC	3 cut(s)	15, 18, 645
GsaI	CCCAGC	2 cut(s)	754, 781
HaeIII	GGCC	6 cut(s)	148, 275, 482, 597, 736, 776
Hin1II	CATG	4 cut(s)	386, 494, 687, 735
HinfI	GANTC	1 cut(s)	217
HphI	GGTGA	1 cut(s)	609
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	2 cut(s)	37, 64
Hpy188III	TCNNGA	3 cut(s)	569, 604, 803
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	4 cut(s)	42, 57, 472, 634
HpyCH4III	ACNGT	2 cut(s)	515, 698
HpyCH4V	TGCA	4 cut(s)	134, 307, 456, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	742, 751
HpyF3I	CTNAG	4 cut(s)	300, 437, 602, 719
Hsp92II	CATG	4 cut(s)	386, 494, 687, 735
LmnI	GCTCC	1 cut(s)	728
Lsp1109I	GCAGC	2 cut(s)	4, 656
LweI	GCATC	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	253, 515
MboII	GAAGA	5 cut(s)	105, 115, 118, 212, 442
MhlI	GDGCHC	3 cut(s)	599, 725, 778
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	4 cut(s)	295, 323, 524, 572
MluNI	TGGCCA	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	585
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	3 cut(s)	249, 399, 495
Msp20I	TGGCCA	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	213, 662
MssI	GTTTAAAC	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	2 cut(s)	213, 662
MwoI	GCNNNNNNNGC	2 cut(s)	742, 751
NcoI	CCATGG	1 cut(s)	731
NlaIII	CATG	4 cut(s)	386, 494, 687, 735
NlaIV	GGNNCC	7 cut(s)	113, 596, 597, 675, 737, 775, 776
PaeR7I	CTCGAG	1 cut(s)	801
PceI	AGGCCT	1 cut(s)	482
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	732
PkrI	GCNGC	3 cut(s)	16, 19, 646
PmeI	GTTTAAAC	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	725
Psp6I	CCWGG	2 cut(s)	211, 660
PspFI	CCCAGC	2 cut(s)	750, 777
PspGI	CCWGG	2 cut(s)	211, 660
PspN4I	GGNNCC	7 cut(s)	113, 596, 597, 675, 737, 775, 776
PspOMI	GGGCCC	2 cut(s)	595, 774
PspPI	GGNCC	6 cut(s)	146, 595, 596, 735, 774, 775
RsaI	GTAC	2 cut(s)	7, 317
RsaNI	GTAC	2 cut(s)	6, 316
RseI	CAYNNNNRTG	3 cut(s)	249, 399, 495
SacI	GAGCTC	1 cut(s)	725
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	3 cut(s)	15, 18, 645
Sau96I	GGNCC	6 cut(s)	146, 595, 596, 735, 774, 775
ScaI	AGTACT	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	213, 662
SduI	GDGCHC	3 cut(s)	599, 725, 778
SfaNI	GCATC	1 cut(s)	173
SfcI	CTRYAG	1 cut(s)	697
Sfr274I	CTCGAG	1 cut(s)	801
SlaI	CTCGAG	1 cut(s)	801
SmiMI	CAYNNNNRTG	3 cut(s)	249, 399, 495
SmlI	CTYRAG	2 cut(s)	652, 801
SmoI	CTYRAG	2 cut(s)	652, 801
Sse9I	AATT	4 cut(s)	295, 323, 524, 572
SseBI	AGGCCT	1 cut(s)	482
SstI	GAGCTC	1 cut(s)	725
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	211, 660
StyI	CCWWGG	2 cut(s)	224, 731
TaaI	ACNGT	2 cut(s)	515, 698
TaqI	TCGA	1 cut(s)	802
TasI	AATT	4 cut(s)	295, 323, 524, 572
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	723
TseI	GCWGC	3 cut(s)	14, 17, 644
TspDTI	ATGAA	5 cut(s)	213, 377, 436, 479, 774
TspRI	CASTG	1 cut(s)	723
Van91I	CCANNNNNTGG	1 cut(s)	732
XapI	RAATTY	1 cut(s)	572
XhoI	CTCGAG	1 cut(s)	801
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.